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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/libbiod">Debian Med / libbiod</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libbiod/commit/515bb68be16fb0638fe9491854ccece530447bc0">515bb68b</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-03-19T08:18:38Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.2.2</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libbiod/commit/c268a0b4e559b4dcabbbd381448430a3950722ec">c268a0b4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-03-19T08:18:43Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/0.2.2'
Update to upstream version '0.2.2'
with Debian dir 26f0adbf4bcf78db8e9f4148ebd4ecbc1a4c9921</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libbiod/commit/b3167ce0f55dc9a63b5068b0b2c71252f8f554cb">b3167ce0</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-03-19T08:18:43Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libbiod/commit/797bf6a93a7739cb6ab8a14c99dc7c97499bbd32">797bf6a9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-03-19T08:25:49Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">libundead is not needed any more
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libbiod/commit/0ec3e402929d144999d946851161e30e40eb681c">0ec3e402</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-03-19T08:26:32Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop patch that is part of new upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libbiod/commit/0bfca66727472e3c402227f8e5f8f4a89af3e174">0bfca667</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-03-19T08:41:20Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use Makefile provided by upstream for building
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
<span class="new-file">
+
Makefile
</span>
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#6f8a88f369eae9b2f3ece90d1ba6366a16f25f9c">
RELEASE-NOTES.md
</a>
</li>
<li class="file-stats">
<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
VERSION
</a>
</li>
<li class="file-stats">
<a href="#45e6750434b6dafb6f1ce75c931e603257023ffd">
<span class="deleted-file">
−
bio/bam/md/core.d
</span>
</a>
</li>
<li class="file-stats">
<a href="#169f88f652a9193ee59668540196958dff394973">
bio/core/bgzf/block.d
</a>
</li>
<li class="file-stats">
<a href="#26245184f68667028e0a7b334c8061eae0ed91de">
bio/core/bgzf/compress.d
</a>
</li>
<li class="file-stats">
<a href="#1160ec51ce2396f5f277707082cf9a982e37c867">
bio/core/bgzf/inputstream.d
</a>
</li>
<li class="file-stats">
<a href="#0ac9d5e0a0863b56f4bc8cc4b39e823d27566bc7">
bio/core/bgzf/outputstream.d
</a>
</li>
<li class="file-stats">
<a href="#8da3672e27c534ce7b1db450758edf0cf54cb61b">
<span class="new-file">
+
bio/core/decompress.d
</span>
</a>
</li>
<li class="file-stats">
<a href="#ca96285ab978868a0588d0b6f33ba73345ec39d7">
<span class="deleted-file">
−
bio/core/fasta.d
</span>
</a>
</li>
<li class="file-stats">
<a href="#f7c7bb2c38d05056419055785e30a3e4394531a0">
bio/core/utils/stream.d
</a>
</li>
<li class="file-stats">
<a href="#ad777f5f8829c46c307e1bb953520f8e5695de8a">
bio/core/utils/switchendianness.d
</a>
</li>
<li class="file-stats">
<a href="#85bd50a9d6b306440dcdcdb399826c9fb9c06b3e">
src_ragel/Makefile
→
bio/etc/ragel/Makefile
</a>
</li>
<li class="file-stats">
<a href="#92d7927b29ccc33f8bc78051284f325ed3a54f0c">
src_ragel/maf_block.rl
→
bio/etc/ragel/maf_block.rl
</a>
</li>
<li class="file-stats">
<a href="#3e8d8b975d7e7d697a50b62d529914ad726bc299">
src_ragel/region.rl
→
bio/etc/ragel/region.rl
</a>
</li>
<li class="file-stats">
<a href="#54cb65d8ccb4fdf6fc461fc3313c8665362f196c">
src_ragel/sam_alignment.rl
→
bio/etc/ragel/sam_alignment.rl
</a>
</li>
<li class="file-stats">
<a href="#70c79c0b7d04256393ebbcb00b84d17e96b20d61">
src_ragel/workarounds/fix_static_const.sh
→
bio/etc/ragel/workarounds/fix_static_const.sh
</a>
</li>
<li class="file-stats">
<a href="#eb8cb945336a99d073a537b254e174cb5b675cf4">
src_ragel/workarounds/fix_switch_case_fallthrough.sh
→
bio/etc/ragel/workarounds/fix_switch_case_fallthrough.sh
</a>
</li>
<li class="file-stats">
<a href="#010cc4a2d34717bb2b5e8ffafbd9dae8296cc853">
<span class="new-file">
+
bio/std/experimental/hts/README.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#e42780b632f25c983a18bdafc7d648a700269218">
bio2/bam/header.d
→
bio/std/experimental/hts/bam/header.d
</a>
</li>
<li class="file-stats">
<a href="#f20d617d89612787dc4776f0673773b1a1474e0a">
bio2/bam/reader.d
→
bio/std/experimental/hts/bam/reader.d
</a>
</li>
<li class="file-stats">
<a href="#01e5c397d5ce0999e176a4bd27af0ba1f03607a3">
bio2/bam/writer.d
→
bio/std/experimental/hts/bam/writer.d
</a>
</li>
<li class="file-stats">
<a href="#0a0ea437f3ac4e466b842fb92c485c3e2d22b065">
bio2/bgzf.d
→
bio/std/experimental/hts/bgzf.d
</a>
</li>
<li class="file-stats">
<a href="#c288c738d81ba85861105011021beb0652dfeda6">
bio2/bgzf_writer.d
→
bio/std/experimental/hts/bgzf_writer.d
</a>
</li>
<li class="file-stats">
<a href="#6f959e6b21e9637b52075ac38ce3c22366e8751f">
bio2/constants.d
→
bio/std/experimental/hts/constants.d
</a>
</li>
<li class="file-stats">
<a href="#3756e013e9395d11e74f0ed360e6483555e61159">
bio2/hashing.d
→
bio/std/experimental/hts/hashing.d
</a>
</li>
<li class="file-stats">
<a href="#2837ccae82350a3ee8e7b897109f5f3962f12684">
<span class="new-file">
+
bio/std/experimental/hts/logger.d
</span>
</a>
</li>
<li class="file-stats">
<a href="#6502a7b36961f96a41cb0117b37fa1a29b46045c">
bio2/pileup.d
→
bio/std/experimental/hts/pileup.d
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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