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<h3>
Olivier Sallou pushed to branch master
at <a href="https://salsa.debian.org/med-team/cnvkit">Debian Med / cnvkit</a>
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<h4>
Commits:
</h4>
<ul>
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<strong><a href="https://salsa.debian.org/med-team/cnvkit/commit/a85a7185b846c7488401e5ebf3c39bd275b27379">a85a7185</a></strong>
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<span>by Olivier Sallou</span>
<i>at 2019-03-27T08:03:04Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">fix rebuild error bug #925568
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<h4>3 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#d88b676a1b1b628ac0ee19b3c38428ad6b9e90e6">
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+
debian/patches/controldir
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/cnvkit/commit/a85a7185b846c7488401e5ebf3c39bd275b27379#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">cnvkit (0.9.5-3) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Fix buster rebuilds (Closes: #925568)</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> d/patches/controldir.patch</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> -- Olivier Sallou <osallou@debian.org> Wed, 27 Mar 2019 08:00:39 +0000</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">cnvkit (0.9.5-2) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> [ Jelmer Vernooij ]</span>
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<li id="d88b676a1b1b628ac0ee19b3c38428ad6b9e90e6">
<a href="https://salsa.debian.org/med-team/cnvkit/commit/a85a7185b846c7488401e5ebf3c39bd275b27379#d88b676a1b1b628ac0ee19b3c38428ad6b9e90e6"><strong>debian/patches/controldir</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Subject: do not create dir if it exists</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">Description: command tries to create an output dir during tests, even if it</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"> already exists, raising an error. Skip creation if already present</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff">Author: Olivier Sallou <osallou@debian.org></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">Bug: 925568</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff">Forwaded: no</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff">Last-Updated: 2019-03-27</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/cnvlib/commands.py</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/cnvlib/commands.py</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1365,8 +1365,9 @@</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> 'anti' if 'antitarget' in fname else ''))</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> if args.output_dir:</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> if not os.path.isdir(args.output_dir):</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- os.mkdir(args.output_dir)</span></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- logging.info("Created directory %s", args.output_dir)</span></span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if not os.path.exists(args.output_dir):</span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ os.mkdir(args.output_dir)</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ logging.info("Created directory %s", args.output_dir)</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> outfname = os.path.join(args.output_dir, outfname)</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> tabio.write(garr, outfname)</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> </span></pre>
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<a href="https://salsa.debian.org/med-team/cnvkit/commit/a85a7185b846c7488401e5ebf3c39bd275b27379#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">no-py-ext</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">python3compat.patch</span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">spelling</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">controldir</span></pre>
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