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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/bbmap">Debian Med / bbmap</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/commit/0c23fb2fcde016a75c297279688d29c4431fade6">0c23fb2f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-03-27T15:06:19Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">spelling
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/commit/13dc1a0166eec9e5119aeb44726030ac0f832e4b">13dc1a01</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-03-27T15:10:55Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">More detailed copyright
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bbmap/commit/271c54862f652b7f0f623919ecddea9978e681e1">271c5486</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-03-27T15:12:36Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Do not install irrelevant doc
</pre>
</li>
</ul>
<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/bbmap/compare/134de0f9d1e3b25709f11849352dfdc5fa89426b...271c54862f652b7f0f623919ecddea9978e681e1#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -48,5 +48,5 @@ Description: short read aligner and other bioinformatic tools - JNI library</td>
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<td class="diff-line-num old_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="mosel"> <span class="n" style="color: #333;">PacBio</span><span class="p">,</span> <span class="m" style="color: #099;">454</span><span class="p">,</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">other</span> <span class="n" style="color: #333;">reads</span><span class="p">;</span> <span class="n" style="color: #333;">very</span> <span class="n" style="color: #333;">high</span> <span class="n" style="color: #333;">sensitivity</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">tolerant</span> <span class="k" style="font-weight: 600;">of</span></span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="mosel"> <span class="n" style="color: #333;">errors</span> <span class="k" style="font-weight: 600;">and</span> <span class="n" style="color: #333;">numerous</span> <span class="n" style="color: #333;">large</span> <span class="n" style="color: #333;">indels</span><span class="p">.</span></span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="mosel"> <span class="p">.</span></span>
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51
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="mosel"> <span class="n" style="color: #333;">This</span> <span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">contains</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">architecture</span> <span class="n" style="color: #333;">depend<span class="idiff left right">a</span>nt</span> <span class="n" style="color: #333;">library</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">bbmap</span></span>
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<td class="diff-line-num new old_line" data-linenumber="52" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="51" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="mosel"> <span class="n" style="color: #333;">This</span> <span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">contains</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">architecture</span> <span class="n" style="color: #333;">depend<span class="idiff left right">e</span>nt</span> <span class="n" style="color: #333;">library</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">bbmap</span></span>
</pre>
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52
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="mosel"> <span class="n" style="color: #333;">tools</span><span class="p">.</span></span></pre>
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<li id="adb7f75f79e3bb85eb62912a2904c5d24af878fb">
<a href="https://salsa.debian.org/med-team/bbmap/compare/134de0f9d1e3b25709f11849352dfdc5fa89426b...271c54862f652b7f0f623919ecddea9978e681e1#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,6 +10,23 @@ Copyright: 2008-2015 Brian Bushnell, Jon Rood</td>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> Berkeley National Laboratory (subject to receipt of any required</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> approvals from the U.S. Dept. of Energy)</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">License: BSD-3-clause</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">Comment: This software was developed under funding from the U.S.</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> Department of Energy. As such, the U.S. Government has been granted for</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> itself and others acting on its behalf a paid-up, nonexclusive, irrevoca</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> ble, worldwide license in the Software to reproduce, prepare derivative</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> works, and perform publicly and display publicly. Beginning five (5)</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> years after the date permission to assert copyright is obtained from the</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> U.S. Department of Energy, and subject to any subsequent five (5) year</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> renewals, the U.S. Government is granted for itself and others acting on</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> its behalf a paid-up, nonexclusive, irrevocable, worldwide li cense in</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> the Software to reproduce, prepare derivative works, distribute copies</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> to the public, perform publicly and display publicly, and to permit</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> others to do so.</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"></span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">Files: resources/truseq.fa.gz</span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> resources/nextera.fa.gz</span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext">Copyright: 2007-2013 Illumina, Inc. All rights reserved</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext">License: BSD-3-clause</span>
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13
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30
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"></span>
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14
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31
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext">Files: debian/*</span>
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15
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext">Copyright: 2016 Andreas Tille <tille@debian.org></span>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/bbmap/compare/134de0f9d1e3b25709f11849352dfdc5fa89426b...271c54862f652b7f0f623919ecddea9978e681e1#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="45" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="45" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -45,3 +45,9 @@ override_dh_fixperms:</td>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext">override_dh_installman:</span>
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<td class="diff-line-num old_line" data-linenumber="46" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> dh_installman</span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> rename 's/\.1$$/.sh.1/' debian/$(DEB_SOURCE)/usr/share/man/man1/*.1</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext">override_dh_installdocs:</span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> dh_installdocs</span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> find debian -name compiling.txt -delete</span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> find debian -name git.txt -delete</span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> find debian -name "Legal*.txt" -delete</span></pre>
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