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<h3>
Dylan Aïssi pushed to branch master
at <a href="https://salsa.debian.org/med-team/bwa">Debian Med / bwa</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/bwa/commit/2f03e0f1fa6b0ca04f6d5ec9f95a488f14508914">2f03e0f1</a></strong>
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<span>by Dylan Aïssi</span>
<i>at 2019-03-30T14:17:53Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add patch from upstream to fix CVE-2019-10269. (Closes: #926014)
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<h4>3 changed files:</h4>
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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+
debian/patches/CVE-2019-10269.patch
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<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/bwa/commit/2f03e0f1fa6b0ca04f6d5ec9f95a488f14508914#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">bwa (0.7.17-3) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Team upload.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> [ Dylan Aïssi ]</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Add patch from upstream to fix CVE-2019-10269.</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> (Closes: #926014)</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> [ Jelmer Vernooij ]</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * Trim trailing whitespace.</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> -- <span class="idiff left right">Jelmer Vernooij <jelmer@debian.org> Sat, 20 Oct 2018 13:21:47 +00</span>00</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> -- <span class="idiff left right">Dylan Aïssi <daissi@debian.org> Sat, 30 Mar 2019 15:15:04 +01</span>00</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">bwa (0.7.17-2) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<li id="31ee11de7dca961ae3945e60f998ddd15f669003">
<a href="https://salsa.debian.org/med-team/bwa/commit/2f03e0f1fa6b0ca04f6d5ec9f95a488f14508914#31ee11de7dca961ae3945e60f998ddd15f669003"><strong>debian/patches/CVE-2019-10269.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Author: Heng Li <lh3@me.com></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">Description: Fix CVE-2019-10269.</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Origin: upstream, https://github.com/lh3/bwa/commit/20d0a13092aa4cb73230492b05f9697d5ef0b88e</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff">Bug: https://github.com/lh3/bwa/pull/232</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">Bug-Debian: https://bugs.debian.org/926014</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/bntseq.c</span></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/bntseq.c</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -197,7 +197,13 @@</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> while (c != '\n' && c != EOF) c = fgetc(fp);</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> i = 0;</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- } else str[i++] = c; // FIXME: potential segfault here</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ } else {</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ if (i >= 1022) {</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ fprintf(stderr, "[E::%s] sequence name longer than 1023 characters. Abort!\n", __func__);</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ exit(1);</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ }</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ str[i++] = c;</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ }</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> }</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> kh_destroy(str, h);</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> fclose(fp);</span></pre>
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<a href="https://salsa.debian.org/med-team/bwa/commit/2f03e0f1fa6b0ca04f6d5ec9f95a488f14508914#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">fix_heap_block_overrun # See https://github.com/lh3/bwa/issues/146</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">fix_build_on_freebsd.patch</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">CVE-2019-10269.patch</span></pre>
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