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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/bcbio">Debian Med / bcbio</a>
</h3>
<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/55e88e34a586a6f6743cbf6b7eb2be5271c56069">55e88e34</a></strong>
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<span>by Andreas Tille</span>
<i>at 2019-04-11T19:43:12Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update TODO
</pre>
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<h4>1 changed file:</h4>
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debian/TODO
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<h4>Changes:</h4>
<li id="d9d67e646e83973f5e1d6cd63fe8c9dffb33ebba">
<a href="https://salsa.debian.org/med-team/bcbio/commit/55e88e34a586a6f6743cbf6b7eb2be5271c56069#d9d67e646e83973f5e1d6cd63fe8c9dffb33ebba"><strong>debian/TODO</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -31,6 +31,7 @@ Package OptiTypePipeline</td>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">github</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">indraniel</span><span class="p">/</span><span class="n" style="color: #333;">OptiType</span> <span class="p">??</span></span>
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32
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32
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="mosel"></span>
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<td class="diff-line-num new_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
33
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="mosel"><span class="n" style="color: #333;">add</span> <span class="n" style="color: #333;">hisat2_extract_splice_sites</span><span class="p">.</span><span class="n" style="color: #333;">py</span> <span class="k" style="font-weight: 600;">to</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">hisat2</span> <span class="k" style="font-weight: 600;">package</span></span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="mosel"> <span class="p">-></span> <span class="n" style="color: #333;">Done</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">Git</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">preparation</span> <span class="n" style="color: #333;">for</span> <span class="m" style="color: #099;">2.1.0</span><span class="p">-</span><span class="m" style="color: #099;">3</span></span>
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34
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="mosel"></span>
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35
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="mosel"><span class="k" style="font-weight: 600;">Package</span> <span class="n" style="color: #333;">MutliQC</span> <span class="p">-</span> <span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">salsa</span></span>
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36
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37
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="mosel"><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">github</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">ewels</span><span class="p">/</span><span class="n" style="color: #333;">MultiQC</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="40" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -39,7 +40,7 @@ package sailfish</td>
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39
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="mosel"><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">github</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">kingsfordgroup</span><span class="p">/</span><span class="n" style="color: #333;">sailfish</span></span>
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40
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41
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="mosel"></span>
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41
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="mosel"><span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">kallisto</span></span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="mosel"><span class="n" style="color: #333;"><span class="idiff left">rough</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">packaging</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">at</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">https</span></span><span class="p"><span class="idiff">://</span></span><span class="n" style="color: #333;"><span class="idiff">salsa</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">debian</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">org</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">med</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">team</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff right">kallisto</span></span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="mosel"><span class="idiff left"> </span><span class="p"><span class="idiff">-></span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">in</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">new</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">queue</span></span></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="mosel"><span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">r</span><span class="p">-</span><span class="n" style="color: #333;">wasabi</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="mosel"><span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">github</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">COMBINE</span><span class="p">-</span><span class="n" style="color: #333;">lab</span><span class="p">/</span><span class="n" style="color: #333;">wasabi</span></span>
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