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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/manta">Debian Med / manta</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/manta/commit/d55193c8730efeae3224273c4378c89236541994">d55193c8</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-04-24T14:56:18Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.5.0+dfsg</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
</a>
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#38f19af7ed107ef74ba38b780659ded160c3be4f">
docs/developerGuide/README.md
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<li class="file-stats">
<a href="#7e4345e5dde1c55745d43779ce7227d543f513f5">
docs/methods/primary/methods.tex
</a>
</li>
<li class="file-stats">
<a href="#66db6f171dd6eb0b141be872538092bd510e596c">
docs/userGuide/README.md
</a>
</li>
<li class="file-stats">
<a href="#7a95572b31a32a90d0b8aa508e77b1f2568a3368">
src/c++/lib/alignment/AlignmentScoringUtilImpl.hh
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</li>
<li class="file-stats">
<a href="#d0aa28c6cf2f62d81af9e6133fbfa59682d7b4fb">
src/c++/lib/alignment/GlobalLargeIndelAlignerImpl.hh
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</li>
<li class="file-stats">
<a href="#38072b691f49cdae1bd433f0a9aec6ed013f36cd">
src/c++/lib/alignment/SingleRefAlignerShared.hh
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<li class="file-stats">
<a href="#8f91305eabf410b7c05209b77fe370123b88a3ce">
src/c++/lib/alignment/SingleRefAlignerSharedImpl.hh
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<li class="file-stats">
<a href="#2edd3bf87bab9fa68fd177b77c31198a38b010ed">
src/c++/lib/applications/EstimateSVLoci/ESLOptions.cpp
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</li>
<li class="file-stats">
<a href="#e46cd67617b503b05da9876e2de81d3f62ca4ea7">
src/c++/lib/applications/GenerateSVCandidates/EdgeRetrieverJumpBin.hh
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<li class="file-stats">
<a href="#692d6d983d2df3f2da23bd87d618e239dbd8cc0c">
src/c++/lib/applications/GenerateSVCandidates/FatSVCandidate.cpp
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</li>
<li class="file-stats">
<a href="#a2314d14950bc62afeb671cca9701498abe9c826">
src/c++/lib/applications/GenerateSVCandidates/FatSVCandidate.hh
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<li class="file-stats">
<a href="#e19cf263e40c0200814dd1d8952c31d993cb75c9">
src/c++/lib/applications/GenerateSVCandidates/GSCOptions.cpp
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<li class="file-stats">
<a href="#8bbbf5fff1121a95d4614950c456d9c0b0809b9b">
src/c++/lib/applications/GenerateSVCandidates/GSCOptions.hh
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<li class="file-stats">
<a href="#204026070543d8df578b31eb20dff91135d220d2">
src/c++/lib/applications/GenerateSVCandidates/GenerateSVCandidates.cpp
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<li class="file-stats">
<a href="#65b273674cc11bd595fbbe9ca7943188c21a03f6">
src/c++/lib/applications/GenerateSVCandidates/SVCandidateAssemblyRefiner.cpp
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<li class="file-stats">
<a href="#be3a102bfcc3abbf6f9dac2fe614e7a05175c1e8">
src/c++/lib/applications/GenerateSVCandidates/SVCandidateAssemblyRefiner.hh
</a>
</li>
<li class="file-stats">
<a href="#b55aa616592b923327f3d12eb0011a08b2c0631e">
src/c++/lib/applications/GenerateSVCandidates/SVFinder.cpp
</a>
</li>
<li class="file-stats">
<a href="#e1705dbab2d5cab2951bb93b663a57eb5d1604c4">
src/c++/lib/applications/GenerateSVCandidates/SVFinder.hh
</a>
</li>
<li class="file-stats">
<a href="#16269b29eadab4a99d77de1d77025c6947022ba1">
src/c++/lib/applications/GenerateSVCandidates/SVScorePairAltProcessor.cpp
</a>
</li>
<li class="file-stats">
<a href="#be9d9fc8a72e5dab468c055a791bd8b26e751c05">
src/c++/lib/applications/GenerateSVCandidates/SVScorePairAltProcessor.hh
</a>
</li>
<li class="file-stats">
<a href="#17a8c8b79f3d3995cc838076132fb10de0882f03">
src/c++/lib/applications/GenerateSVCandidates/SVScorePairRefProcessor.hh
</a>
</li>
<li class="file-stats">
<a href="#c15d839b07749f2e276441a1fef45b5e5ccf7040">
src/c++/lib/applications/GenerateSVCandidates/SVScorer.cpp
</a>
</li>
<li class="file-stats">
<a href="#7fe2bbab36e04b614d411cef8879df25caf997ff">
src/c++/lib/applications/GetAlignmentStats/AlignmentStatsOptions.cpp
</a>
</li>
<li class="file-stats">
<a href="#c8446ae9c01e562aeeaa5b0c7b2b9cd4ae81ff93">
src/c++/lib/applications/GetChromDepth/ChromDepthOptions.cpp
</a>
</li>
<li class="file-stats">
<a href="#831f17d3760d576f083986fe5462fc1a2b8403b4">
src/c++/lib/applications/MergeAlignmentStats/MergeAlignmentStats.hh
</a>
</li>
<li class="file-stats">
<a href="#ef866a6e139842f6035282b164594e4d3350c045">
src/c++/lib/applications/MergeAlignmentStats/MergeAlignmentStatsOptions.cpp
</a>
</li>
<li class="file-stats">
<a href="#2d3d8720ba83771b5a6b73f73a4115e9055f962b">
src/c++/lib/applications/SummarizeAlignmentStats/SASOptions.cpp
</a>
</li>
<li class="file-stats">
<a href="#542069d3f20e2866af7942b75b2464f9deede4b6">
src/c++/lib/applications/SummarizeAlignmentStats/SummarizeAlignmentStats.hh
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
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