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<h3>
Alexandre Mestiashvili pushed to branch master
at <a href="https://salsa.debian.org/med-team/subread">Debian Med / subread</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/subread/commit/4e6bd95a51977335102c9efd92ec5be7f00d4673">4e6bd95a</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2019-04-30T08:06:23Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update d/watch, add uversionmangle to remove -source suffix
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/subread/commit/66bc47fd0e578b5f85343155c91c7b160bc9b9b1">66bc47fd</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2019-04-30T08:06:31Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.6.4+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/subread/commit/6a85154c284f9bbe154d1142e2b7d53bbc905128">6a85154c</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2019-04-30T08:07:28Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.6.4+dfsg'
Update to upstream version '1.6.4+dfsg'
with Debian dir f1e174c775b856dabe1fce9c51babbe4158bb198</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/subread/commit/638a6d20f10001a894b02f1caf57d71d22e84d7a">638a6d20</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2019-04-30T08:13:10Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Refresh patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/subread/commit/061c221758516a2319dcb3ee77bd92c5c878e358">061c2217</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2019-04-30T08:17:57Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Switch to debhelper-compat, drop d/compat
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/subread/commit/58059c675b5a90059e9d836af176dadba533d9a5">58059c67</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2019-04-30T08:18:10Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelog
Gbp-Dch: Ignore
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/subread/commit/5bea6394bf474c8c8910cf8156c1700973a3a60a">5bea6394</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2019-04-30T08:55:48Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Install genRandomReads binary and generate man page
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/subread/commit/e7e77574a12fb4258c9f1a7da0ed30d2ec3386ab">e7e77574</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2019-04-30T08:58:01Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update typo.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/subread/commit/64e7ac6a26c8def88b8c31d21e9bab98265e389b">64e7ac6a</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2019-04-30T08:58:28Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelog
Gbp-Dch: Ignore
</pre>
</li>
</ul>
<h4>27 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#fb9e8d937d72f3a26397728040ed9ba05f3aea89">
debian/patches/fix_ftbfs_kfreebsd.patch
</a>
</li>
<li class="file-stats">
<a href="#738bfe9eb140bee362e519ae990e19d7391f9b5f">
debian/patches/typo.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#6d3faf73fa0c7b80be9cc3c2d1b06a1be79b0425">
debian/subread.install
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#9b9715372d0cd39d21711a077b6f2ae42fb45135">
doc/SubreadUsersGuide.tex
</a>
</li>
<li class="file-stats">
<a href="#7079f81404dcaadc0154c53a419b2d1cb5f253e6">
src/HelperFunctions.c
</a>
</li>
<li class="file-stats">
<a href="#e8151656777acee64e1f016170e308d49d0a7f96">
src/HelperFunctions.h
</a>
</li>
<li class="file-stats">
<a href="#c1b8d333291fcba8482e6874c5a8cf61b565242c">
src/Makefile.Linux
</a>
</li>
<li class="file-stats">
<a href="#0f0909639769aa3e7d493b832c416371ba8f6089">
src/Makefile.MacOS
</a>
</li>
<li class="file-stats">
<a href="#03b53aa7b28dab0125f2bb23f06f341cab6c608d">
src/SNPCalling.c
</a>
</li>
<li class="file-stats">
<a href="#a966c1ca8483a9cb0ae68bb1172555b63158c468">
src/SUBindel.c
</a>
</li>
<li class="file-stats">
<a href="#296b4814ae931def4e82a8f84e22f6c24f5b3b14">
src/core-indel.c
</a>
</li>
<li class="file-stats">
<a href="#269c5079f32c711431ad058d1e3ac63987f29255">
src/core-indel.h
</a>
</li>
<li class="file-stats">
<a href="#ecc92c74c51f8b1692fd1bd13b9657e456522c0a">
src/core-interface-aligner.c
</a>
</li>
<li class="file-stats">
<a href="#431a9a7f741eae0019b2785bf4ae504ca6fe0271">
src/core-interface-subjunc.c
</a>
</li>
<li class="file-stats">
<a href="#d7c9610d0bb39f36045810aea42dfc930a2d041f">
src/core-junction.c
</a>
</li>
<li class="file-stats">
<a href="#a26ea438a2b6aee04f419d17c87da7e9b997e7ae">
src/core.c
</a>
</li>
<li class="file-stats">
<a href="#724f240bcbee55847ffdce02cbc9a8c9976493e4">
src/gen_long_chromosomes.c
</a>
</li>
<li class="file-stats">
<a href="#0cd9a7b1d1859b9b5f8aa2a313c4ccab061915c5">
src/gen_rand_reads.c
</a>
</li>
<li class="file-stats">
<a href="#18d5c843fdde01c811087dacdcf7dbe1f38af4d3">
src/gene-algorithms.c
</a>
</li>
<li class="file-stats">
<a href="#18817811a7810da84ec451359a001a4b28ef5c43">
src/gene-value-index.c
</a>
</li>
<li class="file-stats">
<a href="#6612baeecf620e30ab51b9fb8e8a2afe1d40812b">
src/hashtable.c
</a>
</li>
<li class="file-stats">
<a href="#30c07b024c4fcae2a43837631bde802ba5d8e371">
src/hashtable.h
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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