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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/libbigwig">Debian Med / libbigwig</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libbigwig/commit/d8a7ea179058eb4c0d692cf8b6e4bc56e00e26f9">d8a7ea17</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2019-05-04T10:28:26Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">About to upload.
</pre>
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<h4>16 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
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debian/changelog
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debian/compat
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debian/control
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debian/copyright
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<a href="#f72a747d988c8d2216eaf6f4bb8ecfef68ee657c">
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debian/libbigwig-dev.dirs
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debian/libbigwig-dev.install
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debian/libbigwig-doc.docs
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debian/libbigwig.doc-base
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debian/libbigwig.links
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debian/libbigwig0.dirs
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debian/libbigwig0.install
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debian/patches/Makefile.patch
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debian/patches/series
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debian/rules
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debian/source/format
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debian/watch
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/libbigwig/commit/d8a7ea179058eb4c0d692cf8b6e4bc56e00e26f9#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">libbigwig (0.4.2+dfsg-1) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Initial release (Closes: 928400)</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * New upstream release</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> Fri, 03 May 2019 18:42:40 +0200</span></pre>
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</li>
<li id="78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<a href="https://salsa.debian.org/med-team/libbigwig/commit/d8a7ea179058eb4c0d692cf8b6e4bc56e00e26f9#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong></a>
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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">11</span></pre>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/libbigwig/commit/d8a7ea179058eb4c0d692cf8b6e4bc56e00e26f9#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Source: libbigwig</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Maintainer: Steffen Moeller <moeller@debian.org></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">Build-Depends: debhelper (>= 11), libcurl4-gnutls-dev|libcurl-dev</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Build-Depends-Indep: doxygen</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Standards-Version: 4.3.0</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Section: libs</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Homepage: https://github.com/dpryan79/libBigWig/</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/libbigwig</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/libbigwig.git</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">Package: libbigwig0</span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">Architecture: any</span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">Multi-Arch: same</span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">Depends: ${shlibs:Depends}, ${misc:Depends}</span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">Recommends: curl</span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">Description: C library for handling bigWig files</span>
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<td class="diff-line-num new new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> This package provides a C library for reading/parsing local and remote</span>
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> bigWig and bigBed files. This library was refurbished to particularly</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> suit to be wrapped by scripting languages by avoiding early bailouts</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> in case of errors.</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">Package: libbigwig-dev</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext">Section: libdevel</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">Multi-Arch: same</span>
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<td class="diff-line-num new new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">Depends: libbigwig0 (= ${binary:Version}), ${misc:Depends}</span>
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<td class="diff-line-num new new_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext">Description: C library for handling bigWig files - header files</span>
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<td class="diff-line-num new new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> This package provides the files needed to develop with the libBigWig</span>
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<td class="diff-line-num new new_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> C library for reading/parsing local and remote bigWig and bigBed files.</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext">Package: libbigwig-doc</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext">Section: libdevel</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext">Depends: ${misc:Depends}</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext">Description: C library for handling bigWig files - documentation</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> This package provides the doxygen-created inline documentation needed</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> to develop with the libBigWig C library for reading/parsing local and</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> remote bigWig and bigBed files.</span></pre>
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<li id="adb7f75f79e3bb85eb62912a2904c5d24af878fb">
<a href="https://salsa.debian.org/med-team/libbigwig/commit/d8a7ea179058eb4c0d692cf8b6e4bc56e00e26f9#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Upstream-Name: libbigwig</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Source: </span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Files: *</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Copyright: 2015 Devon Ryan</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">License: MIT</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">Files: debian/*</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Copyright: 2019 Steffen Moeller <moeller@debian.org></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">License: MIT</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">License: MIT</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> Permission is hereby granted, free of charge, to any person obtaining a</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> copy of this software and associated documentation files (the "Software"),</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> to deal in the Software without restriction, including without limitation</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> the rights to use, copy, modify, merge, publish, distribute, sublicense,</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> and/or sell copies of the Software, and to permit persons to whom the</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> Software is furnished to do so, subject to the following conditions:</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> The above copyright notice and this permission notice shall be included</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> in all copies or substantial portions of the Software.</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.</span></pre>
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<a href="https://salsa.debian.org/med-team/libbigwig/commit/d8a7ea179058eb4c0d692cf8b6e4bc56e00e26f9#f72a747d988c8d2216eaf6f4bb8ecfef68ee657c"><strong>debian/libbigwig-dev.dirs</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">usr/lib</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">usr/include</span></pre>
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<a href="https://salsa.debian.org/med-team/libbigwig/commit/d8a7ea179058eb4c0d692cf8b6e4bc56e00e26f9#b7fe6d06e2b454e90db4058e45dbb33a84688778"><strong>debian/libbigwig-dev.install</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="php"><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="k" style="font-weight: 600;">include</span><span class="cm" style="color: #998; font-style: italic;">/*</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="php"><span class="cm" style="color: #998; font-style: italic;">usr/lib/*/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">*.</span><span class="nx">so</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="php"><span class="c1" style="color: #998; font-style: italic;">#usr/lib/lib*.so</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="php"><span class="c1" style="color: #998; font-style: italic;">#usr/lib/*/pkgconfig/*</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="php"><span class="c1" style="color: #998; font-style: italic;">#usr/share/pkgconfig/*</span></span></pre>
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<a href="https://salsa.debian.org/med-team/libbigwig/commit/d8a7ea179058eb4c0d692cf8b6e4bc56e00e26f9#118d698a8428dd08114b89fc4da4a8a02ad61b62"><strong>debian/libbigwig-doc.docs</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">docs/html</span></pre>
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<a href="https://salsa.debian.org/med-team/libbigwig/commit/d8a7ea179058eb4c0d692cf8b6e4bc56e00e26f9#4b36933dcc2820e49d807aaa6588a6ef8540fe77"><strong>debian/libbigwig.doc-base</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Document: libbigwig</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Title: Debian libBigWig Manual</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Author: Devon Ryan</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">Abstract: Doxygen documentation of the</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> libBigWig library</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Section: Programming</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">Format: HTML</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">Index: /usr/share/doc/libbigwig/html/index.html</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">Files: /usr/share/doc/libbigwig/html/*.html</span></pre>
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<a href="https://salsa.debian.org/med-team/libbigwig/commit/d8a7ea179058eb4c0d692cf8b6e4bc56e00e26f9#9d1a183597bf827923777be83c20271cf1756a83"><strong>debian/libbigwig.links</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">usr/lib/libBigWig.so.0 usr/lib/libBigWig.so</span></pre>
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<a href="https://salsa.debian.org/med-team/libbigwig/commit/d8a7ea179058eb4c0d692cf8b6e4bc56e00e26f9#51ff60771af04a84e0e586477c2561c7585b17ba"><strong>debian/libbigwig0.dirs</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">usr/lib</span></pre>
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<a href="https://salsa.debian.org/med-team/libbigwig/commit/d8a7ea179058eb4c0d692cf8b6e4bc56e00e26f9#c75fe6e7462a1dbe70c2661491959406a3eff5bd"><strong>debian/libbigwig0.install</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="php"><span class="c1" style="color: #998; font-style: italic;">#lib*.so.*</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="php"><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">/*/</span><span class="nx">lib</span><span class="o" style="font-weight: 600;">*.</span><span class="nx">so</span><span class="o" style="font-weight: 600;">.*</span></span></pre>
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<a href="https://salsa.debian.org/med-team/libbigwig/commit/d8a7ea179058eb4c0d692cf8b6e4bc56e00e26f9#f6361e25b2927c77444e8b661a216d7f56f9d1f8"><strong>debian/patches/Makefile.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="gh" style="color: #999;">Index: libbigwig-0.4.2+dfsg/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- libbigwig-0.4.2+dfsg.orig/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ libbigwig-0.4.2+dfsg/Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1,14 +1,18 @@</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> CC ?= gcc</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> AR ?= ar</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> RANLIB ?= ranlib</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-CFLAGS ?= -g -Wall -O3 -Wsign-compare</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+CFLAGS ?= -g -Wall -O3 -Wsign-compare -flto</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> LIBS = -lcurl -lm -lz</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> EXTRA_CFLAGS_PIC = -fpic</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-LDFLAGS =</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+VERSION=0.4.2</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+MAJOR=$(shell echo $(VERSION)| cut -f1 -d.)</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+LDFLAGS = -Wl,-soname,libBigWig.so.$(MAJOR) -Wl,-flto</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> LDLIBS =</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> INCLUDES = </span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+DESTDIR =</span></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+PREFIX ?= /usr</span></span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> </span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-prefix = /usr/local</span></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+prefix = $(PREFIX)</span></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> includedir = $(prefix)/include</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> libdir = $(exec_prefix)/lib</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -40,7 +44,13 @@ libBigWig.a: $(OBJS)</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"> $(AR) -rcs $@ $(OBJS)</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"> $(RANLIB) $@</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"> </span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-libBigWig.so: $(OBJS:.o=.pico)</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+libBigWig.so: libBigWig.so.$(MAJOR)</span></span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ln -s libBigWig.so.$(MAJOR) libBigWig.so</span></span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+libBigWig.so.$(MAJOR): libBigWig.so.$(VERSION)</span></span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ ln -s libBigWig.so.$(VERSION) libBigWig.so.$(MAJOR)</span></span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+libBigWig.so.$(VERSION): $(OBJS:.o=.pico)</span></span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"> $(CC) -shared $(LDFLAGS) -o $@ $(OBJS:.o=.pico) $(LDLIBS) $(LIBS)</span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="diff"> test/testLocal: libBigWig.a</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -56,7 +66,7 @@ test/testWrite: libBigWig.a</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"> $(CC) -o $@ -I. $(CFLAGS) test/testWrite.c libBigWig.a $(LIBS)</span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="diff"> test/exampleWrite: libBigWig.so</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- $(CC) -o $@ -I. -L. $(CFLAGS) test/exampleWrite.c -lBigWig $(LIBS) -Wl,-rpath .</span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(CC) -o $@ -I. -L. $(CFLAGS) test/exampleWrite.c -lBigWig $(LIBS) -Wl,-rpath $(CURDIR)</span></span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="diff"> test/testBigBed: libBigWig.a</span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="diff"> $(CC) -o $@ -I. $(CFLAGS) test/testBigBed.c libBigWig.a $(LIBS)</span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -71,7 +81,7 @@ clean:</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="diff"> rm -f *.o libBigWig.a libBigWig.so *.pico test/testLocal test/testRemote test/testWrite test/exampleWrite test/testRemoteManyContigs test/testBigBed test/testIterator example_output.bw</span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="diff"> install: libBigWig.a libBigWig.so</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- install -d $(prefix)/lib $(prefix)/include</span></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- install libBigWig.a $(prefix)/lib</span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- install libBigWig.so $(prefix)/lib</span></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- install *.h $(prefix)/include</span></span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ install -d $(DESTDIR)$(prefix)/lib $(DESTDIR)$(prefix)/include</span></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ install libBigWig.a $(DESTDIR)$(prefix)/lib</span></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ install libBigWig.so $(DESTDIR)$(prefix)/lib</span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ install *.h $(DESTDIR)$(prefix)/include</span></span></pre>
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<a href="https://salsa.debian.org/med-team/libbigwig/commit/d8a7ea179058eb4c0d692cf8b6e4bc56e00e26f9#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Makefile.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/libbigwig/commit/d8a7ea179058eb4c0d692cf8b6e4bc56e00e26f9#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">#!/usr/bin/make -f</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"># See debhelper(7) (uncomment to enable)</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"># output every command that modifies files on the build system.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">#export DH_VERBOSE = 1</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"># see FEATURE AREAS in dpkg-buildflags(1)</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">#export DEB_BUILD_MAINT_OPTIONS = hardening=+all</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"># see ENVIRONMENT in dpkg-buildflags(1)</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"># package maintainers to append CFLAGS</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">#export DEB_CFLAGS_MAINT_APPEND = -Wall -pedantic</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"># package maintainers to append LDFLAGS</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">#export DEB_LDFLAGS_MAINT_APPEND = -Wl,--as-needed</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"></span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">%:</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> dh $@</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">override_dh_auto_build-indep:</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> $(MAKE) doc</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">override_dh_auto_install:</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> dh_auto_install</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> mkdir -p $(CURDIR)/debian/tmp/usr/lib/$(shell dpkg-architecture -qDEB_TARGET_MULTIARCH)</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> #mv $(CURDIR)/debian/tmp/usr/lib/*so* $(CURDIR)/debian/tmp/usr/lib/$(shell dpkg-architecture -qDEB_TARGET_MULTIARCH)</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> mv *.so.* $(CURDIR)/debian/tmp/usr/lib/$(shell dpkg-architecture -qDEB_TARGET_MULTIARCH)</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> # This is a symbolic link, not a copy</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> mv *.so $(CURDIR)/debian/tmp/usr/lib/$(shell dpkg-architecture -qDEB_TARGET_MULTIARCH)</span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"></span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext">override_dh_auto_clean:</span>
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32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> dh_auto_clean</span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> rm -rf docs</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> rm -rf libBigWig*so*</span></pre>
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<a href="https://salsa.debian.org/med-team/libbigwig/commit/d8a7ea179058eb4c0d692cf8b6e4bc56e00e26f9#53399f7f2dd7535c43cdcfa511a9c06044a9c238"><strong>debian/source/format</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">3.0 (quilt)</span></pre>
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<li id="68ef9f98c01c7eecd4c605cc26048a06f3304b79">
<a href="https://salsa.debian.org/med-team/libbigwig/commit/d8a7ea179058eb4c0d692cf8b6e4bc56e00e26f9#68ef9f98c01c7eecd4c605cc26048a06f3304b79"><strong>debian/watch</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">version=4</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">opts="dversionmangle=auto,oversionmangle=s/$/+dfsg/,filenamemangle=s%(?:.*?)?v?(\d[\d.]*)\.tar\.gz%libbigwig-$1.tar.gz%" \</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> https://github.com/dpryan79/libBigWig/tags \</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> (?:.*?/)?v?(\d[\d.]*)\.tar\.gz debian uupdate</span></pre>
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