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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/virulencefinder">Debian Med / virulencefinder</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/virulencefinder/commit/8aca68cc4204d7b30dcb1d7ccb8663415812985d">8aca68cc</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-05-24T19:44:26Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Example package
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/virulencefinder/commit/623afd244173860d784f74df05424d2770bde113">623afd24</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-05-24T19:50:47Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix tests
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/virulencefinder/commit/29715127239e16f0a303f67984f7ec0ad3aa7e5b">29715127</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-05-24T20:01:27Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix tests
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/virulencefinder/commit/ebfc5f0fb41e715ec2d1c56e33f3e36b6fa9cbff">ebfc5f0f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-05-24T20:07:20Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Depends: kma, Upload to unstable
</pre>
</li>
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<h4>9 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#f5f51601866c86e59a004bd93fa415f5675be8c5">
<span class="new-file">
+
debian/clean
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
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<li class="file-stats">
<a href="#98d48fda9ef53f0c6422e9e5b59ede62fd629e93">
<span class="new-file">
+
debian/virulencefinder-examples.install
</span>
</a>
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<li class="file-stats">
<a href="#ebe6e267f1c51a00cbd46ba6156d315acac319af">
debian/docs
→
debian/virulencefinder.docs
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<li class="file-stats">
<a href="#fb052a9d59ff42a6698484969524c145c86cf730">
debian/install
→
debian/virulencefinder.install
</a>
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<li class="file-stats">
<a href="#ade1467ab461817b52073c9fc8be97f8c8fd59d1">
debian/links
→
debian/virulencefinder.links
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/virulencefinder/compare/0273a5da4ae6041e536fcfdf73c32674670b6d6a...ebfc5f0fb41e715ec2d1c56e33f3e36b6fa9cbff#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">virulencefinder (0.0+git20190402.4812325-1) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">virulencefinder (0.0+git20190402.4812325-1) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> * Initial release (Closes: #<bug>)</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> TODO: https://pypi.org/project/cgecore/</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Initial release (Closes: #929497)</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Fri, 24 May 2019 <span class="idiff left right">14:36:44</span> +0200</span></pre>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Fri, 24 May 2019 <span class="idiff left right">22:05:35</span> +0200</span></pre>
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<li id="f5f51601866c86e59a004bd93fa415f5675be8c5">
<a href="https://salsa.debian.org/med-team/virulencefinder/compare/0273a5da4ae6041e536fcfdf73c32674670b6d6a...ebfc5f0fb41e715ec2d1c56e33f3e36b6fa9cbff#f5f51601866c86e59a004bd93fa415f5675be8c5"><strong>debian/clean</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">test/Hit_in_genome_seq.fsa</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">test/Virulence_genes.fsa</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">test/data.json</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">test/results.txt</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">test/tmp/out_virulence_ecoli.xml</span></pre>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/virulencefinder/compare/0273a5da4ae6041e536fcfdf73c32674670b6d6a...ebfc5f0fb41e715ec2d1c56e33f3e36b6fa9cbff#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,22 +7,39 @@ Build-Depends: debhelper (>= 12~),</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> dh-python,</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> python3,</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> python3-tabulate,</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> python3-cgecore</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> python3-cgecore,</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> ncbi-blast+ <!nocheck></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Standards-Version: 4.3.0</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/virulencefinder</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/virulencefinder.git</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Homepage: https://bitbucket.org/genomicepidemiology/virulencefinder</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Package: virulencefinder</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext">Architecture: a<span class="idiff left right">ny</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">Architecture: a<span class="idiff left right">ll</span></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Depends: ${misc:Depends},</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> ${python3:Depends},</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> python3,</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> python3-tabulate,</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> python3-cgecore</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext">Description: identify viruelnce genes in total or partial sequenced isolates of bacteria</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> python3-cgecore,</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> ncbi-blast+,</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> kma</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">Description: identify virulence genes in total or partial sequenced isolates of bacteria</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> The VirulenceFinder service contains one Python script</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> virulencefinder.py which is the script of the latest version of the</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> VirulenceFinder service. VirulenceFinder identifies viruelnce genes in</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> total or partial sequenced isolates of bacteria - at the moment only E.</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> coli, Enterococcus, S. aureus and Listeria are available.</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext">Package: virulencefinder-examples</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext">Architecture: all</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext">Depends: ${misc:Depends}</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext">Recommends: virulencefinder</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext">Description: example data for virulencefinder</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> The VirulenceFinder service contains one Python script</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> virulencefinder.py which is the script of the latest version of the</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> VirulenceFinder service. VirulenceFinder identifies viruelnce genes in</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> total or partial sequenced isolates of bacteria - at the moment only E.</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> coli, Enterococcus, S. aureus and Listeria are available.</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> This package provides an example for virulencefinder including</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> ecoli database.</span></pre>
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<a href="https://salsa.debian.org/med-team/virulencefinder/compare/0273a5da4ae6041e536fcfdf73c32674670b6d6a...ebfc5f0fb41e715ec2d1c56e33f3e36b6fa9cbff#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,8 +12,8 @@ override_dh_auto_test:</td>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> ./virulencefinder.py -i test/test.fsa -o test/ -p test/database/ -mp blastn -x -q ; \</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> file=test/results_tab.tsv ; \</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> DIFF=$$(diff <span class="idiff left right">$file</span> test/test_results.tsv) ; \</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> if [ "$<span class="idiff left right">DIFF" == "" ] && [ -s $file</span> ] ; then \</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> DIFF=$$(diff <span class="idiff left right">"$$file"</span> test/test_results.tsv) ; \</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> if [ "$<span class="idiff left right">$DIFF" = "" ] && [ -s "$$file"</span> ] ; then \</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> echo "TEST SUCCEEDED" ; \</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> else \</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> echo "TEST FAILED"; \</span>
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<a href="https://salsa.debian.org/med-team/virulencefinder/compare/0273a5da4ae6041e536fcfdf73c32674670b6d6a...ebfc5f0fb41e715ec2d1c56e33f3e36b6fa9cbff#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="shell"><span class="nb" style="color: #0086b3;">set</span> <span class="nt" style="color: #000080;">-e</span></span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="shell"></span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">pkg</span><span class="o" style="font-weight: 600;">=</span><span class="c" style="color: #998; font-style: italic;"><span class="idiff left right">#PACKAGENAME#</span></span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">pkg</span><span class="o" style="font-weight: 600;">=</span><span class="idiff left right">virulencefinder</span></span>
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5
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="shell"></span>
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6
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">""</span> <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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7
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">mktemp</span> <span class="nt" style="color: #000080;">-d</span> /tmp/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span><span class="nt" style="color: #000080;">-test</span>.XXXXXX<span class="k" style="font-weight: 600;">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -14,5 +14,19 @@ fi</td>
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: #000080;">-a</span> /usr/share/doc/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span>/examples/<span class="k" style="font-weight: 600;">*</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="shell"></span>
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="shell"><span class="nb" style="color: #0086b3;">gunzip</span> <span class="nt" style="color: #000080;">-r</span> <span class="k" style="font-weight: 600;">*</span></span>
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17
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18
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="shell"></span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#do_stuff_to_test_package#</span></span></pre>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># upstream test script is a bit broken</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="shell">virulencefinder.py <span class="nt" style="color: #000080;">-i</span> test.fsa <span class="nt" style="color: #000080;">-o</span> <span class="nb" style="color: #0086b3;">.</span> <span class="nt" style="color: #000080;">-p</span> database <span class="nt" style="color: #000080;">-mp</span> blastn <span class="nt" style="color: #000080;">-x</span> <span class="nt" style="color: #000080;">-q</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="shell"><span class="nv" style="color: #008080;">file</span><span class="o" style="font-weight: 600;">=</span>results_tab.tsv</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="o" style="font-weight: 600;">!</span> <span class="nt" style="color: #000080;">-s</span> <span class="nv" style="color: #008080;">$file</span> <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"Result file </span><span class="nv" style="color: #008080;">$file</span><span class="s2" style="color: #d14;"> is missing."</span></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"TEST FAILED"</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">exit </span>1</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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<td class="diff-line-num new new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="shell"><span class="nv" style="color: #008080;">DIFF</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">$(</span>diff <span class="nv" style="color: #008080;">$file</span> test_results.tsv<span class="k" style="font-weight: 600;">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$DIFF</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">""</span> <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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<td class="diff-line-num new new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"TEST SUCCEEDED"</span></span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="shell"><span class="k" style="font-weight: 600;">else</span></span>
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<td class="diff-line-num new new_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"TEST FAILED"</span></span>
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32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span></pre>
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<a href="https://salsa.debian.org/med-team/virulencefinder/compare/0273a5da4ae6041e536fcfdf73c32674670b6d6a...ebfc5f0fb41e715ec2d1c56e33f3e36b6fa9cbff#98d48fda9ef53f0c6422e9e5b59ede62fd629e93"><strong>debian/virulencefinder-examples.install</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="php"><span class="nx">test</span><span class="o" style="font-weight: 600;">/*</span> <span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">share</span><span class="o" style="font-weight: 600;">/</span><span class="nx">doc</span><span class="o" style="font-weight: 600;">/</span><span class="nx">virulencefinder</span><span class="o" style="font-weight: 600;">/</span><span class="nx">examples</span></span></pre>
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<a href="https://salsa.debian.org/med-team/virulencefinder/compare/0273a5da4ae6041e536fcfdf73c32674670b6d6a...ebfc5f0fb41e715ec2d1c56e33f3e36b6fa9cbff#ebe6e267f1c51a00cbd46ba6156d315acac319af"><strong>debian/docs</strong>
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