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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/bcbio">Debian Med / bcbio</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/a15afab377b43a4736374a9114f5aeecb5fa8499">a15afab3</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2019-05-24T16:38:31Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update of TODO, bits here and there
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/4016ff058ea96bdb5999731d4add1cd2d9dcaf2d">4016ff05</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2019-05-24T16:40:28Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.1.5</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/0df836e78b3829c02d3ff248b609bcc4135a82cc">0df836e7</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2019-05-24T16:41:00Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.1.5'
Update to upstream version '1.1.5'
with Debian dir a0525dd819b71479a92efedcb8f9b18da0656bd2</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/c27247126fe04bd8d18542d3204c6bbabc26fbf9">c2724712</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2019-05-24T16:47:17Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version.
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#d30b04166486087de34ff05cf278d3dd2ddd2360">
HISTORY.md
</a>
</li>
<li class="file-stats">
<a href="#911a1520d19a460146d2a13f06313e889177f30d">
bcbio/distributed/ipythontasks.py
</a>
</li>
<li class="file-stats">
<a href="#7f8e86644b62bf131a07b434c1d1f5892bce0ae6">
bcbio/galaxy/nglims.py
</a>
</li>
<li class="file-stats">
<a href="#399d062423d7dfda6c87b58e34ead968ccd6189c">
bcbio/heterogeneity/loh.py
</a>
</li>
<li class="file-stats">
<a href="#cb1999524a51a97bd40da890cd301d883550f995">
bcbio/install.py
</a>
</li>
<li class="file-stats">
<a href="#da78dae37bf2a485ad61927257ded16419c04470">
bcbio/pipeline/region.py
</a>
</li>
<li class="file-stats">
<a href="#6a5842dd9e3c5daac8e6d62a34e4d60ab86b78bf">
bcbio/pipeline/run_info.py
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</li>
<li class="file-stats">
<a href="#9e1db37d57ea57b0838bc2ccd6bf3efc9a2741d3">
bcbio/provenance/system.py
</a>
</li>
<li class="file-stats">
<a href="#0b928052acb70b506a8457627983f038aaf8fd4d">
bcbio/qc/multiqc.py
</a>
</li>
<li class="file-stats">
<a href="#7255d2d3e114e73d864fce48680956d6d019643b">
bcbio/qc/srna.py
</a>
</li>
<li class="file-stats">
<a href="#c1d6d5901ce458f965663de0167fb468e31dcc23">
bcbio/rnaseq/ericscript.py
</a>
</li>
<li class="file-stats">
<a href="#5bc7769f3f38355000e265e7cd0f29abe33c412c">
bcbio/rnaseq/gtf.py
</a>
</li>
<li class="file-stats">
<a href="#688992fa25f09b502eca17fe095445164aa4934f">
bcbio/srna/mirdeep.py
</a>
</li>
<li class="file-stats">
<a href="#ae6293f3c848911707aeab1fe561e64ac421c7a9">
bcbio/structural/prioritize.py
</a>
</li>
<li class="file-stats">
<a href="#c3e56a51408184fc035daaf4f846c54934c20fe7">
bcbio/structural/regions.py
</a>
</li>
<li class="file-stats">
<a href="#a279fe1949220f4c0e5b2b5a7e9aaf64900a51b5">
bcbio/structural/shared.py
</a>
</li>
<li class="file-stats">
<a href="#ef9e027c453496e438d979be5491259d5e843de0">
bcbio/utils.py
</a>
</li>
<li class="file-stats">
<a href="#4a2d47a21c0a96d7fdf1cc3749bf934812edc5a5">
bcbio/variation/coverage.py
</a>
</li>
<li class="file-stats">
<a href="#94e9a8b90ca85dfd599675a410b3a869b8e98a14">
bcbio/variation/gatkfilter.py
</a>
</li>
<li class="file-stats">
<a href="#0aac44520e89cf1dd2c0a15e26a524ac8201a66c">
bcbio/variation/mutect2.py
</a>
</li>
<li class="file-stats">
<a href="#d9d67e646e83973f5e1d6cd63fe8c9dffb33ebba">
debian/TODO
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#254a2da7a740675e537439eb88e32083b9ea4771">
docs/conf.py
</a>
</li>
<li class="file-stats">
<a href="#808e92701da9624eeb85ce506de79b054743b18f">
docs/contents/cloud.rst
</a>
</li>
<li class="file-stats">
<a href="#f1753c26ad7dd9c07a75161a266af4cb354610d3">
docs/contents/configuration.rst
</a>
</li>
<li class="file-stats">
<a href="#45dcd8f6b0f68eefcca4810bd4ab6572256d710a">
docs/contents/installation.rst
</a>
</li>
<li class="file-stats">
<a href="#ad09acacfb85e045bff5979d57f781cba5d38534">
docs/contents/parallel.rst
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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