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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/libhmsbeagle">Debian Med / libhmsbeagle</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libhmsbeagle/commit/42f7cc23f94b98211139e942880d91ae98c96e39">42f7cc23</a></strong>
<div>
<span>by Frédéric Bonnard</span>
<i>at 2019-05-27T21:10:51Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix ppc64el FTBFS with altivec (Closes: #922776)
Patch to undefine colliding but locally unneeded redefinitions by altivec.
</pre>
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<strong><a href="https://salsa.debian.org/med-team/libhmsbeagle/commit/59403e95bd28b68304159c7dda9292fa51ef620a">59403e95</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-05-27T21:10:51Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge branch 'fix-922776' into 'master'
Fix ppc64el FTBFS with altivec (Closes: #922776)
See merge request med-team/libhmsbeagle!1</pre>
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<h4>3 changed files:</h4>
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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+
debian/patches/fix-922776.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/libhmsbeagle/compare/0ffd16f13791a79488bd4ae59cba443e78cd272d...59403e95bd28b68304159c7dda9292fa51ef620a#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -45,7 +45,7 @@ Description: High-performance lib for Bayesian and Maximum Likelihood phylogenet</td>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> This package contains development files needed to build against Beagle library.</span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext">Package: libhmsbeagle1v5</span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="plaintext">Architecture: amd64 i386 arm64 armhf</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext">Architecture: amd64 i386 arm64 armhf<span class="idiff left right"> ppc64el</span></span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> beignet-opencl-icd|mesa-opencl-icd|opencl-icd</span>
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<li id="8864496e71c988b26a25866b11d7593a6a635331">
<a href="https://salsa.debian.org/med-team/libhmsbeagle/compare/0ffd16f13791a79488bd4ae59cba443e78cd272d...59403e95bd28b68304159c7dda9292fa51ef620a#8864496e71c988b26a25866b11d7593a6a635331"><strong>debian/patches/fix-922776.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Description: Fix #922776</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">On ppc64el, altivec.h redefines bool, pixel and vector which can collide with</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">c++ types.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff">This altivec.h inclusion is done by opencl in CL/cl_platform.h .</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff">As altivec.h explains, it's possible to undefine those for C++ compatibility in</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff">libhmsbeagle/GPU/GPUInterface.h where we don't need them and where it fails,</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff">while doing that on the right plateform.</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff">Finally, enable libhmsbeagle1v5 on ppc64el.</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff">Author: Frédéric Bonnard <frediz@debian.org></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff">---</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff">This patch header follows DEP-3: http://dep.debian.net/deps/dep3/</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gh" style="color: #999;">Index: libhmsbeagle/libhmsbeagle/GPU/GPUInterface.h</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- libhmsbeagle.orig/libhmsbeagle/GPU/GPUInterface.h</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ libhmsbeagle/libhmsbeagle/GPU/GPUInterface.h</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -58,6 +58,11 @@</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> #include <OpenCL/opencl.h></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> # else</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> #include <CL/opencl.h></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# if defined(__VEC__) && defined(__ALTIVEC__) && !defined(__APPLE_ALTIVEC__)</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ #undef vector</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ #undef pixel</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ #undef bool</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# endif</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> # endif</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> # ifdef BEAGLE_XCODE</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"> #include "libhmsbeagle/GPU/kernels/BeagleOpenCL_kernels_xcode.h"</span></pre>
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<a href="https://salsa.debian.org/med-team/libhmsbeagle/compare/0ffd16f13791a79488bd4ae59cba443e78cd272d...59403e95bd28b68304159c7dda9292fa51ef620a#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,3 +2,4 @@ enable_static.patch</td>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"># disable_cpu_sse_plugin.patch</span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">gcc-4.7.patch</span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">doxygen_update.patch</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">fix-922776.patch</span></pre>
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