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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/libarb">Debian Med / libarb</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libarb/commit/f21334a18d395ed71db5e818db325f02b0fe7c4c">f21334a1</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-06-06T21:15:49Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix readlink
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libarb/commit/364990a51c8f5bf4e31ac0ce6b7f03c54e30bc6d">364990a5</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-06-07T04:21:51Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Also try to build ARBDB (but additional header files will be needed)
</pre>
</li>
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#3003ca3cd7e616a0d99b11f7b0c48744659f4ebd">
debian/patches/fix_main_makefile.patch
</a>
</li>
<li class="file-stats">
<a href="#7f1c79caf9de411614a532ba33a601d7bb1d6791">
debian/patches/ignore_unneeded_stuff.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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</li>
</ul>
<h4>Changes:</h4>
<li id="3003ca3cd7e616a0d99b11f7b0c48744659f4ebd">
<a href="https://salsa.debian.org/med-team/libarb/compare/c69b19ced5d9c4029ffa6b6b610c8cbbdc87e3d0...364990a51c8f5bf4e31ac0ce6b7f03c54e30bc6d#3003ca3cd7e616a0d99b11f7b0c48744659f4ebd"><strong>debian/patches/fix_main_makefile.patch</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="259" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="259" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -259,7 +259,7 @@</td>
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<pre style="margin: 0;"> <span id="LC259" class="line" lang="diff"> </span>
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<td class="diff-line-num new_line" data-linenumber="260" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC260" class="line" lang="diff"> build: arb</span>
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<td class="diff-line-num old_line" data-linenumber="261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC261" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- $(MAKE) binlink preplib compile_compatibility</span></span>
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<td class="diff-line-num old old_line" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC262" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(MAKE) core</span></span>
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<td class="diff-line-num new old_line" data-linenumber="263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC262" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(MAKE) <span class="idiff left right">db </span>core</span></span>
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<td class="diff-line-num new_line" data-linenumber="263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC263" class="line" lang="diff"> </span>
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<td class="diff-line-num old_line" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC264" class="line" lang="diff"> all:</span>
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<td class="diff-line-num old_line" data-linenumber="265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC265" class="line" lang="diff"> @echo "Build time" > $(TIMELOG)</span>
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<li id="7f1c79caf9de411614a532ba33a601d7bb1d6791">
<a href="https://salsa.debian.org/med-team/libarb/compare/c69b19ced5d9c4029ffa6b6b610c8cbbdc87e3d0...364990a51c8f5bf4e31ac0ce6b7f03c54e30bc6d#7f1c79caf9de411614a532ba33a601d7bb1d6791"><strong>debian/patches/ignore_unneeded_stuff.patch</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/SOURCE_TOOLS/generate_all_links.sh</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/SOURCE_TOOLS/generate_all_links.sh</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -1,7 +1,7 @@</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"> #!/bin/bash</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> SELF=$ARBHOME/SOURCE_TOOLS/generate_all_links.sh</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-READLINK=${ARBHOME}/SH/arb_readlink</span></span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+READLINK=readlink</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> finderr() {</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -126,7 +126,9 @@ makedir lib/help &&</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff"> (test -z $MOTIF_LIBPATH || symlink_file $MOTIF_LIBPATH lib/libXm.so.3) &&</span>
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5
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -164,7 +173,7 @@</td>
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164
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173
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="diff"> defined $revision || die "expected known revision!";</span>
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165
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174
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<pre style="margin: 0;"> <span id="LC174" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- a/Makefile</span></span>
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166
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175
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<pre style="margin: 0;"> <span id="LC175" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/Makefile</span></span>
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167
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<pre style="margin: 0;">-<span id="LC167" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -162<span class="idiff left right">5,7 +1625</span>,7 @@ redo_links: clean_links</span></span>
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176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -162<span class="idiff left right">4,7 +1624</span>,7 @@ redo_links: clean_links</span></span>
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168
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="diff"> #********************************************************************************</span>
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169
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178
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="diff"> </span>
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179
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="diff"> header_libs:</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -173,7 +182,7 @@</td>
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173
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182
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="diff"> </span>
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174
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183
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="diff"> #********************************************************************************</span>
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184
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="diff"> </span>
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176
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<pre style="margin: 0;">-<span id="LC176" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -165<span class="idiff left right">7,7 +1657</span>,7 @@ endif</span></span>
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185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -165<span class="idiff left right">6,7 +1656</span>,7 @@ endif</span></span>
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177
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186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="diff"> </span>
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178
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187
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="diff"> </span>
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179
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188
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="diff"> binlink:</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -182,7 +191,7 @@</td>
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182
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191
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="diff"> </span>
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183
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192
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="diff"> preplib:</span>
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184
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193
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<pre style="margin: 0;"> <span id="LC193" class="line" lang="diff"> (cd lib;$(MAKE) all)</span>
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185
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<pre style="margin: 0;">-<span id="LC185" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -19<span class="idiff left right">24,7 +1924</span>,7 @@ arb_external: convert tools gde readseq</span></span>
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194
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -19<span class="idiff left right">10,7 +1910</span>,7 @@ arb_external: convert tools gde readseq</span></span>
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195
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<pre style="margin: 0;"> <span id="LC195" class="line" lang="diff"> arb_no_perl: arbapplications arb_external</span>
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="diff"> arb: </span>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/libarb/compare/c69b19ced5d9c4029ffa6b6b610c8cbbdc87e3d0...364990a51c8f5bf4e31ac0ce6b7f03c54e30bc6d#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -37,7 +37,7 @@ config.makefile: config.makefile.template</td>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="plaintext"></span>
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38
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext">override_dh_auto_build:</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> ln -s TEMPLATES INCLUDE</span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> for header in UNIT_TESTER/*.h ; do ln -s ../$${header} INCLUDE/`basename $${header}` ; done</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> for header in <span class="idiff left right">CORE/*.h </span>UNIT_TESTER/*.h ; do ln -s ../$${header} INCLUDE/`basename $${header}` ; done</span>
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41
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> ln -s /usr/include/valgrind/valgrind.h INCLUDE/valgrind.h</span>
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42
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> ln -s ../AISC_COM/AISC PROBE_COM/AISC</span>
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43
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> mkdir bin</span>
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