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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/libarb">Debian Med / libarb</a>
</h3>
<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libarb/commit/1557d956cfd2fe72f78c443e3a65637a4df3f1fa">1557d956</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-06-07T04:53:18Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 6.0.6</pre>
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<h4>1 changed file:</h4>
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<a href="#ae4cc5a71702903f52c8842001cf214b45c55a47">
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+
WINDOW/aw_awar_defs.hxx
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<h4>Changes:</h4>
<li id="ae4cc5a71702903f52c8842001cf214b45c55a47">
<a href="https://salsa.debian.org/med-team/libarb/commit/1557d956cfd2fe72f78c443e3a65637a4df3f1fa#ae4cc5a71702903f52c8842001cf214b45c55a47"><strong>WINDOW/aw_awar_defs.hxx</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#ifndef AW_AWAR_DEFS_HXX</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AW_AWAR_DEFS_HXX</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="cpp"></span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_DB "tmp/nt/arbdb/"</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_DB_PATH AWAR_DB "file_name"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_DB_TYPE AWAR_DB "type"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_DB_FILTER AWAR_DB "filter"</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_DB_NAME AWAR_DB_PATH "_without_path" // awar is automatically updated when AWAR_DB_PATH changes</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_DEFAULT_ALIGNMENT "presets/use" // has to match ../ARBDB/arbdb.h@GB_DEFAULT_ALIGNMENT</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_TREE "focus/tree_name"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_TREE_REFRESH "tmp/focus/tree_refresh" // touch this awar to refresh the tree display</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_CONFIGURATION "focus/configuration"</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_SECURITY_LEVEL "tmp/etc/security_level"</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_GDE_EXPORT_FILTER "tmp/gde/export_filter"</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_GDE_FILTER "tmp/gde/filter"</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_DB_COMMENT "description"</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_PT_SERVER "nt/pt_server"</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_TARGET_STRING "nt/target_string"</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_PRIMER_TARGET_STRING "nt/primer_target_string"</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_GENE_CONTENT "nt/gene_content"</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_MAX_MISMATCHES "nt/max_mismatches"</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_ITARGET_STRING "nt/itarget_string"</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_EXPERT "nt/expert"</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_SAI_COLOR_STR "tmp/sai_color_str" // to visualize SAIs in probe Match window</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="cpp"><span class="c1" style="color: #998; font-style: italic;">// local awars for edit and edit4:</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_SPECIES_NAME_LOCAL "tmp/edit/species_name" // string: name of selected species</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_CURSOR_POSITION_LOCAL "tmp/edit/cursor_position" // int: position in sequence [0..N-1]</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_EDITOR_ALIGNMENT "tmp/edit/alignment" // string: alignment used by editor</span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="cpp"><span class="c1" style="color: #998; font-style: italic;">// global awars</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_CURSOR_POSITION "tmp/focus/cursor_position" // int: position in sequence range=[1;len]</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_SET_CURSOR_POSITION "tmp/focus/set_cursor_position" // int: set position in sequence (remote control for ARB_EDIT4) range=[0;len-1]</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_SPECIES_NAME "tmp/focus/species_name" // string: name of selected species</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_INFO_BUTTON_TEXT "tmp/focus/info_button_text" // string: to display selected species</span></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_ORGANISM_NAME "tmp/focus/organism_name" // string: name of selected organism (differs from AWAR_SPECIES_NAME only for pseudo-gene-species)</span></span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;">/* - normally AWAR_ORGANISM_NAME contains the same value as AWAR_SPECIES_NAME</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> - if AWAR_SPECIES_NAME contains the name of a pseudo gene-species then AWAR_ORGANISM_NAME</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> contains the name of the species the pseudo gene-species originated from */</span></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="cpp"><span class="c1" style="color: #998; font-style: italic;">// #define AWAR_EXPERIMENT_NAME "tmp/focus/experiment_name" // string : name of selected experiment</span></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_SAI_NAME "tmp/focus/sai_name" // string : name of selected SAI (e.g. in EDIT4 and 'Manage SAI')</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_SAI_GLOBAL "tmp/focus/sai_global" // string : name of selected SAI in EDIT4/Visualize SAI Tool - used in RNA3D Tool</span></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_HELIX_NAME "tmp/focus/helix_name" // string: name of selected helix, for helix numbers append _NR, get default by GBT_get_default_helix</span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_ERROR_MESSAGES "tmp/message/displayed" // error-messages: display awar</span></span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_FOOTER "tmp/LeftFooter" // mode line (showing help for selected mode)</span></span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_FOOTER_MAX_LEN 100 // max allowed textlen for mode line</span></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define AWAR_AWM_MASK "tmp/awm_mask"</span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#error aw_awar_defs.hxx included twice</span></span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span></pre>
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