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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/libgclib">Debian Med / gclib</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgclib/commit/09a46f38ea5030197a0ec5aa4d771c8ff8e2d9b0">09a46f38</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-06-13T20:26:52Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove autopkgtest boilerplate
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgclib/commit/0eae079058cc6c6d867fb966f2d1e624eea5afcc">0eae0790</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-06-13T20:27:35Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add symbols file
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgclib/commit/2d1e72039a5cbbf1d40a84b6aac68ad5ac28b8e0">2d1e7203</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-06-13T20:42:36Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Explain source files that are included into the library
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgclib/commit/0dfef8625e0493e97a2f668ac33d0bfc53171e10">0dfef862</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-06-13T20:44:41Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">delete header files of not compiled C++ source files
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgclib/commit/a0d653f7341977a8e6c43187bc43c3213bb9907f">a0d653f7</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-06-13T20:44:56Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Do not include gtest.cpp into library, build mdtest.cpp
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgclib/commit/37c7fbb9810ec714ae1f3b70fd2af3dbfeb96837">37c7fbb9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-06-13T21:08:07Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Try to build mdtest but failed.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgclib/commit/8154392e5c6a3476990d892d98baafd5cdb74b5b">8154392e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-06-13T21:14:58Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix symbols file name
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libgclib/commit/6572cc68344d2464b1e58d4128e3a56c2c7d65b1">6572cc68</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-06-13T21:24:44Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">patch from dh_makeshlibs
</pre>
</li>
</ul>
<h4>8 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#cf9802e192b48f765b1b5c8268d550d89c933053">
<span class="new-file">
+
debian/README.source
</span>
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</li>
<li class="file-stats">
<a href="#f6a99a1e522a0f5ca122fd9818a9d8536ea59942">
<span class="deleted-file">
−
debian/README.test
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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</li>
<li class="file-stats">
<a href="#33d90e9931721543e4a13c73d491f1583f68fdc0">
<span class="new-file">
+
debian/libgclib0.symbols
</span>
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<li class="file-stats">
<a href="#6d5507768ac8975f221ead23baef90cb894ce802">
debian/patches/autoconf.patch
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
<span class="deleted-file">
−
debian/tests/control
</span>
</a>
</li>
<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
<span class="deleted-file">
−
debian/tests/run-unit-test
</span>
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="cf9802e192b48f765b1b5c8268d550d89c933053">
<a href="https://salsa.debian.org/med-team/libgclib/compare/3a229756b66e6d04b118ec30da4a29bf304eabec...6572cc68344d2464b1e58d4128e3a56c2c7d65b1#cf9802e192b48f765b1b5c8268d550d89c933053"><strong>debian/README.source</strong></a>
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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">gclib for Debian</span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">================</span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">The final target which needs gclib is gffread. This build the files</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> GBase.cpp</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> GArgs.cpp</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> GFaSeqGet.cpp</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> gdna.cpp</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> codons.cpp</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> gff.cpp</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> GStr.cpp</span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> GFastaIndex.cpp</span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> gff_utils.cpp</span>
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<td class="diff-line-num new new_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">To build proper libraries some rudimentary automake code was added as</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">quilt patch. Since the gclib source contains more C++ code that might</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">be useful as well all those C++ file except the tests and the following</span>
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">source files are built and included into the library:</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> GBam.cpp: This needs bam.h and sam.h while it needs to be clarified</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> from what project these header files are used</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> gdimg.cpp: This would introduce an unneeded dependency from libgd-dev</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">FIXME: I tried to build mdtest but linking it against the just build</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">library does not work the way I tried. Some hint from someone who</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext">knows automake better than me might be helpful.</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Thu, 18 Apr 2019 12:54:42 +0200</span></pre>
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<a href="https://salsa.debian.org/med-team/libgclib/compare/3a229756b66e6d04b118ec30da4a29bf304eabec...6572cc68344d2464b1e58d4128e3a56c2c7d65b1#f6a99a1e522a0f5ca122fd9818a9d8536ea59942"><strong>debian/README.test</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="php"><span class="nx">Notes</span> <span class="nx">on</span> <span class="nx">how</span> <span class="k" style="font-weight: 600;">this</span> <span class="nx">package</span> <span class="nx">can</span> <span class="nx">be</span> <span class="nx">tested</span><span class="o" style="font-weight: 600;">.</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="php"><span class="err" style="color: #a61717; background-color: #e3d2d2;">────────────────────────────────────────</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="php"></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="php"><span class="nx">This</span> <span class="nx">package</span> <span class="nx">can</span> <span class="nx">be</span> <span class="nx">tested</span> <span class="nx">by</span> <span class="nx">running</span> <span class="nx">the</span> <span class="nx">provided</span> <span class="nx">test</span><span class="o" style="font-weight: 600;">:</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="php"></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="php"> <span class="nx">sh</span> <span class="nx">run</span><span class="o" style="font-weight: 600;">-</span><span class="nx">unit</span><span class="o" style="font-weight: 600;">-</span><span class="nx">test</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="php"></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="php"><span class="nx">in</span> <span class="nx">order</span> <span class="nx">to</span> <span class="nx">confirm</span> <span class="nx">its</span> <span class="nx">integrity</span><span class="o" style="font-weight: 600;">.</span></span></pre>
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<a href="https://salsa.debian.org/med-team/libgclib/compare/3a229756b66e6d04b118ec30da4a29bf304eabec...6572cc68344d2464b1e58d4128e3a56c2c7d65b1#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,8 +5,7 @@ Uploaders: Steffen Moeller <moeller@debian.org>,</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper (>= 12~),</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> d-shlibs,</span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext"> libgd-dev</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> d-shlibs</span>
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10
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">Standards-Version: 4.3.0</span>
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11
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/libgclib</span>
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12
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/libgclib.git</span>
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<li id="33d90e9931721543e4a13c73d491f1583f68fdc0">
<a href="https://salsa.debian.org/med-team/libgclib/compare/3a229756b66e6d04b118ec30da4a29bf304eabec...6572cc68344d2464b1e58d4128e3a56c2c7d65b1#33d90e9931721543e4a13c73d491f1583f68fdc0"><strong>debian/libgclib0.symbols</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">libgclib.so.0 libgclib0 #MINVER#</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"> COLOR_buf@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> GA_flag_BAD_ALIGN@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> GA_flag_HAS_PARENT@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> GA_flag_IS_REF@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> GA_flag_PREPPED@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> GFFSCORE_NONE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> GFF_MAX_EXON@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> GFF_MAX_INTRON@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> GFF_MAX_LOCUS@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> IUPAC_2BIT@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> IUPAC_2BITN@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> IUPAC_COMP@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> IUPAC_DEFS@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> IdxDataSIZE32@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> IdxDataSIZE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> _Z10BLAST_Gdb3PiS_S_@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> _Z10GSocketErr4GStrb@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> _Z10GmktempdirPc@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> _Z10buf_getnumP9GCDBufferRjPj@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> _Z10fileExistsPKc@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> _Z10fnv1a_hashPKc@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> _Z10g2bit2baseh@Base 0.11.2</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> _Z10gcdb_allocj@Base 0.11.2</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> _Z10getFileExtPKc@Base 0.11.2</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> _Z10getOvlCodeR6GffObjS0_Rib@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> _Z10parseFloatRPcRf@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> _Z10replaceStrRPcS_@Base 0.11.2</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> _Z10startsWithPKcS0_@Base 0.11.2</span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> _Z10table6mersPKciPP4GVecItE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> _Z10trimSuffixPcPKc@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> _Z10uint32_sunPv@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> _Z10uint32_x86Pv@Base 0.11.2</span>
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34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> _Z10writeFastaP8_IO_FILEPKcS2_S2_ii@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> _Z11GreedyAlignPKciS0_ibiii@Base 0.11.2</span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> _Z11cdb_hashaddjh@Base 0.11.2</span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> _Z11cmpSeedDiagPvS_@Base 0.11.2</span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> _Z11color_resetP8_IO_FILE@Base 0.11.2</span>
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39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> _Z11dbg_dequoteRPc@Base 0.11.2</span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> _Z11delFileNamePc@Base 0.11.2</span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> _Z11endian_testv@Base 0.11.2</span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> _Z11fastaSeqGetR8GFastaDbPKc@Base 0.11.2</span>
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43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> _Z11getFileNamePKc@Base 0.11.2</span>
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44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> _Z11newEmptyStrv@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext"> _Z11parseDoubleRPcRd@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> _Z11parseNumberRPcRd@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> _Z11read_dbinfoiPPcR7cdbInfo@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> _Z11startsiWithPKcS0_@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> _Z11strExonTypec@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> _Z11trimiSuffixPcPKc@Base 0.11.2</span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> _Z11uint32_packPcj@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> _Z12cmpSeedScorePvS_@Base 0.11.2</span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> _Z12collectSeedsR5GListI6GXSeedER9GXSeqData12GAlnTrimType@Base 0.11.2</span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> _Z12color_normalP8_IO_FILE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> _Z12gffnames_refRP8GffNames@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext"> _Z12gfo_cmpByLocPvS_@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> _Z12ntComplementc@Base 0.11.2</span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext"> _Z12reverseCharsPci@Base 0.11.2</span>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> _Z12translateDNAPKcRii@Base 0.11.2</span>
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60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> _Z13color_resetbgP8_IO_FILE@Base 0.11.2</span>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> _Z13color_resetfgP8_IO_FILE@Base 0.11.2</span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext"> _Z13commaprintnumm@Base 0.11.2</span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext"> _Z13compareCountsPvS_@Base 0.11.2</span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext"> _Z13compareOrdnumPvS_@Base 0.11.2</span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext"> _Z13inplace_LowerPc@Base 0.11.2</span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext"> _Z13match_adapterR9GXSeqData12GAlnTrimTypeiP16CGreedyAlignDatad@Base 0.11.2</span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"> _Z13uint32_unpackPcPj@Base 0.11.2</span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext"> _Z14GXGreedyExtendPKciS0_ibRiS1_R16CGreedyAlignDataP12GXEditScript@Base 0.11.2</span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext"> _Z14classcode_rankc@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext"> _Z14cmpDiagBands_RPvS_@Base 0.11.2</span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="plaintext"> _Z14cmpSeedScore_RPvS_@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext"> _Z14codonTableInitv@Base 0.11.2</span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext"> _Z14extendUngappedPKciiS0_iiRiS1_S1_b@Base 0.11.2</span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext"> _Z14gffnames_unrefRP8GffNames@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext"> _Z14gfo_cmpRefByIDPvS_@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="plaintext"> _Z14translateCodonPKc@Base 0.11.2</span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext"> _Z15printEditScriptP12GXEditScript@Base 0.11.2</span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext"> _Z15uint32_pack_bigPcj@Base 0.11.2</span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="plaintext"> _Z16BED_addAttributeP8_IO_FILERiPKcz@Base 0.11.2</span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="plaintext"> _Z16DefLTCompareProcI4GSegEiPvS1_@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="plaintext"> _Z16gthreads_errExitiPKc@Base 0.11.2</span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext"> _Z16singleExonTMatchR6GffObjS0_Ri@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext"> _Z17GreedyAlignRegionPKciiS0_iiP16CGreedyAlignDataP8CAlnTrimb@Base 0.11.2</span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="plaintext"> _Z17GreedyAlignRegionPKciiS0_iiiiiP16CGreedyAlignDataP8CAlnTrimb@Base 0.11.2</span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext"> _Z17gcvt_endian_setupv@Base 0.11.2</span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="plaintext"> _Z17reverseComplementPci@Base 0.11.2</span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="plaintext"> _Z17uint32_unpack_bigPcPj@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="plaintext"> _Z19s_FindFirstMismatchPKciS0_iiib@Base 0.11.2</span>
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89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext"> _Z23s_GetNextNonAffineTbackPPiiiS_@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="plaintext"> _Z5GFreePPv@Base 0.11.2</span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="plaintext"> _Z6GErrorPKcz@Base 0.11.2</span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="plaintext"> _Z6GfopenPKcPc@Base 0.11.2</span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="plaintext"> _Z6GmkdirPKcbi@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="plaintext"> _Z6GstrEqPKcS0_@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext"> _Z6loCasePKc@Base 0.11.2</span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="plaintext"> _Z6upCasePKc@Base 0.11.2</span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="plaintext"> _Z7GAssertPKcS0_j@Base 0.11.2</span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="plaintext"> _Z7GCallocPPvm@Base 0.11.2</span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="plaintext"> _Z7GMallocPPvm@Base 0.11.2</span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext"> _Z7G_mkdirPKci@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="plaintext"> _Z7GstrcmpPKcS0_i@Base 0.11.2</span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="plaintext"> _Z7GstrdupPKcS0_@Base 0.11.2</span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="plaintext"> _Z7GstrdupPKci@Base 0.11.2</span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="plaintext"> _Z7GstriEqPKcS0_@Base 0.11.2</span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="plaintext"> _Z7GsubstrPKcPcS1_@Base 0.11.2</span>
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106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="plaintext"> _Z7buf_getP9GCDBufferRjPcj@Base 0.11.2</span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="plaintext"> _Z7get6merPc@Base 0.11.2</span>
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108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="plaintext"> _Z7rstrchrPcc@Base 0.11.2</span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="plaintext"> _Z7rstrstrPKcS0_S0_@Base 0.11.2</span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="plaintext"> _Z7strchrsPKcS0_@Base 0.11.2</span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="plaintext"> _Z7strhashPKc@Base 0.11.2</span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="plaintext"> _Z8GMessagePKcz@Base 0.11.2</span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="plaintext"> _Z8GReallocPPvm@Base 0.11.2</span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="plaintext"> _Z8GmemscanPvjS_j@Base 0.11.2</span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="plaintext"> _Z8GstricmpPKcS0_i@Base 0.11.2</span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="plaintext"> _Z8cdb_hashPKcj@Base 0.11.2</span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="plaintext"> _Z8chrInStrcPKc@Base 0.11.2</span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="plaintext"> _Z8color_bgiP8_IO_FILE@Base 0.11.2</span>
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119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="plaintext"> _Z8color_fgiP8_IO_FILE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="plaintext"> _Z8djb_hashPKc@Base 0.11.2</span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="plaintext"> _Z8endsWithPKcS0_@Base 0.11.2</span>
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122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="plaintext"> _Z8fgetlineRPcRiP8_IO_FILEPlPi@Base 0.11.2</span>
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123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="plaintext"> _Z8fileSizePKc@Base 0.11.2</span>
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124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="plaintext"> _Z8gDnaInitv@Base 0.11.2</span>
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125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="plaintext"> _Z8gdna2bitRPci@Base 0.11.2</span>
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126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="plaintext"> _Z8get_lastPPiiiS_@Base 0.11.2</span>
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127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="plaintext"> _Z8offt_sunPv@Base 0.11.2</span>
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128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="plaintext"> _Z8offt_x86Pv@Base 0.11.2</span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="plaintext"> _Z8parseHexRPcRj@Base 0.11.2</span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="plaintext"> _Z8parseIntRPcRi@Base 0.11.2</span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="plaintext"> _Z8qsortnucPKvS0_@Base 0.11.2</span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext"> _Z8rstrfindPKcS0_@Base 0.11.2</span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="plaintext"> _Z8strToIntPcRi@Base 0.11.2</span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="plaintext"> _Z8strifindPKcS0_@Base 0.11.2</span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="plaintext"> _Z8strlowerPc@Base 0.11.2</span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="plaintext"> _Z8strsplitPcR9GDynArrayIS_EPKci@Base 0.11.2</span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="plaintext"> _Z8strsplitPcR9GDynArrayIS_Eci@Base 0.11.2</span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="plaintext"> _Z8strsplitPcR9GDynArrayIS_Ei@Base 0.11.2</span>
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139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="plaintext"> _Z8strupperPc@Base 0.11.2</span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="plaintext"> _Z9BLAST_Gcdii@Base 0.11.2</span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="plaintext"> _Z9endsiWithPKcS0_@Base 0.11.2</span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="plaintext"> _Z9int16_sunPv@Base 0.11.2</span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="plaintext"> _Z9int16_x86Pv@Base 0.11.2</span>
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144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="plaintext"> _Z9match6merPcPP4GVecItE@Base 0.11.2</span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="plaintext"> _Z9packCodonccc@Base 0.11.2</span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="plaintext"> _Z9parseUIntRPcRj@Base 0.11.2</span>
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147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="plaintext"> _Z9parse_intPcPKcRi@Base 0.11.2</span>
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148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="plaintext"> _Z9parse_intRPcPKcRi@Base 0.11.2</span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="plaintext"> _Z9strToUIntPcRj@Base 0.11.2</span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="plaintext"> _ZGVZN7GThread11num_runningEvE5vLock@Base 0.11.2</span>
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151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="plaintext"> _ZN10GAlnColumn6removeEv@Base 0.11.2</span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="plaintext"> _ZN10GAlnColumn8bestCharEPs@Base 0.11.2</span>
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153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="plaintext"> _ZN10GStopWatch10startTimerEv@Base 0.11.2</span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="plaintext"> _ZN10GStopWatch14getElapsedTimeEv@Base 0.11.2</span>
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155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="plaintext"> _ZN10GStopWatch9stopTimerEv@Base 0.11.2</span>
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156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="plaintext"> _ZN10GUDPSocket10disconnectEv@Base 0.11.2</span>
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157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="plaintext"> _ZN10GUDPSocket10leaveGroupERK4GStr@Base 0.11.2</span>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="plaintext"> _ZN10GUDPSocket12setBroadcastEv@Base 0.11.2</span>
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159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="plaintext"> _ZN10GUDPSocket15setMulticastTTLEh@Base 0.11.2</span>
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160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="plaintext"> _ZN10GUDPSocket6sendToEPKviRK4GStrt@Base 0.11.2</span>
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161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="plaintext"> _ZN10GUDPSocket8recvFromEPviR4GStrRt@Base 0.11.2</span>
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162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="plaintext"> _ZN10GUDPSocket9joinGroupERK4GStr@Base 0.11.2</span>
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163
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="plaintext"> _ZN10MSAColumns14refineClippingE@Base 0.11.2</span>
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164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="plaintext"> _ZN10MSAColumns14removeConsGapsE@Base 0.11.2</span>
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165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="plaintext"> _ZN11GCommSocket10setTimeoutEi@Base 0.11.2</span>
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166
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="plaintext"> _ZN11GCommSocket14getForeignPortEv@Base 0.11.2</span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="plaintext"> _ZN11GCommSocket17getForeignAddressEv@Base 0.11.2</span>
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168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="plaintext"> _ZN11GCommSocket4recvEPvi@Base 0.11.2</span>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="plaintext"> _ZN11GCommSocket4sendEPKvi@Base 0.11.2</span>
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170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="plaintext"> _ZN11GCommSocket7connectERK4GStrt@Base 0.11.2</span>
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171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="plaintext"> _ZN11GCommSocket8recvlineEv@Base 0.11.2</span>
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172
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="plaintext"> _ZN11GFastaIndex10buildIndexEv@Base 0.11.2</span>
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173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="plaintext"> _ZN11GFastaIndex10storeIndexEP8_IO_FILE@Base 0.11.2</span>
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174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="plaintext"> _ZN11GFastaIndex10storeIndexEPKc@Base 0.11.2</span>
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175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="plaintext"> _ZN11GFastaIndex9addRecordEPKcjlii@Base 0.11.2</span>
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176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="plaintext"> _ZN11GFastaIndex9loadIndexEPKc@Base 0.11.2</span>
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177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="plaintext"> _ZN11GLineReader7getLineEP8_IO_FILERl@Base 0.11.2</span>
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178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="plaintext"> _ZN12GReadBufLine3lenEv@Base 0.11.2</span>
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179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="plaintext"> _ZN12GReadBufLine4fposEv@Base 0.11.2</span>
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180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="plaintext"> _ZN12GReadBufLine4lineEv@Base 0.11.2</span>
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181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="plaintext"> _ZN12GReadBufLine7fillbufEv@Base 0.11.2</span>
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182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="plaintext"> _ZN12GReadBufLine7putLineEv@Base 0.11.2</span>
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183
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="plaintext"> _ZN12GReadBufLine8readlineEi@Base 0.11.2</span>
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184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="plaintext"> _ZN14GapXEditScript5printEv@Base 0.11.2</span>
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185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="plaintext"> _ZN14current_thread5yieldEv@Base 0.11.2</span>
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186
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<pre style="margin: 0;">+<span id="LC186" class="line" lang="plaintext"> _ZN14current_thread9sleep_forEi@Base 0.11.2</span>
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187
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<pre style="margin: 0;">+<span id="LC187" class="line" lang="plaintext"> _ZN16GTCPServerSocket6acceptEv@Base 0.11.2</span>
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188
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="plaintext"> _ZN16GTCPServerSocket9setListenEi@Base 0.11.2</span>
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189
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="plaintext"> _ZN4GStr11make_uniqueEv@Base 0.11.2</span>
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190
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="plaintext"> _ZN4GStr12appendQuotedEPKccb@Base 0.11.2</span>
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191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="plaintext"> _ZN4GStr12replace_dataEPNS_4DataE@Base 0.11.2</span>
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192
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="plaintext"> _ZN4GStr13startTokenizeEPKc14enTokenizeMode@Base 0.11.2</span>
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193
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="plaintext"> _ZN4GStr18invalid_args_errorEPKc@Base 0.11.2</span>
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194
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="plaintext"> _ZN4GStr19invalid_index_errorEPKc@Base 0.11.2</span>
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195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="plaintext"> _ZN4GStr2toEc@Base 0.11.2</span>
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196
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="plaintext"> _ZN4GStr2trEPKcS1_@Base 0.11.2</span>
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197
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="plaintext"> _ZN4GStr3cutEii@Base 0.11.2</span>
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198
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="plaintext"> _ZN4GStr4fromEc@Base 0.11.2</span>
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199
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="plaintext"> _ZN4GStr4padCEjc@Base 0.11.2</span>
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200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="plaintext"> _ZN4GStr4padLEjc@Base 0.11.2</span>
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201
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="plaintext"> _ZN4GStr4padREjc@Base 0.11.2</span>
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202
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="plaintext"> _ZN4GStr4readEP8_IO_FILEPKcm@Base 0.11.2</span>
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203
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="plaintext"> _ZN4GStr4trimEPKc@Base 0.11.2</span>
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204
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="plaintext"> _ZN4GStr4trimEc@Base 0.11.2</span>
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205
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<pre style="margin: 0;">+<span id="LC205" class="line" lang="plaintext"> _ZN4GStr5asIntERii@Base 0.11.2</span>
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206
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="plaintext"> _ZN4GStr5asIntEi@Base 0.11.2</span>
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207
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="plaintext"> _ZN4GStr5chompEPKc@Base 0.11.2</span>
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208
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="plaintext"> _ZN4GStr5clearEi@Base 0.11.2</span>
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209
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="plaintext"> _ZN4GStr5countEc@Base 0.11.2</span>
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210
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="plaintext"> _ZN4GStr5lowerEv@Base 0.11.2</span>
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211
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="plaintext"> _ZN4GStr5pasteEPKcii@Base 0.11.2</span>
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212
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="plaintext"> _ZN4GStr5pasteERKS_ii@Base 0.11.2</span>
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213
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="plaintext"> _ZN4GStr5splitEPKc@Base 0.11.2</span>
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214
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="plaintext"> _ZN4GStr5splitEc@Base 0.11.2</span>
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215
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<pre style="margin: 0;">+<span id="LC215" class="line" lang="plaintext"> _ZN4GStr5trimLEPKc@Base 0.11.2</span>
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216
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<pre style="margin: 0;">+<span id="LC216" class="line" lang="plaintext"> _ZN4GStr5trimLEc@Base 0.11.2</span>
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217
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="plaintext"> _ZN4GStr5trimREPKc@Base 0.11.2</span>
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218
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="plaintext"> _ZN4GStr5trimREc@Base 0.11.2</span>
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219
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="plaintext"> _ZN4GStr5upperEv@Base 0.11.2</span>
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236
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="plaintext"> _ZN4GStr7replaceEPKcS1_@Base 0.11.2</span>
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239
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="plaintext"> _ZN4GStr8new_dataEPKcj@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="plaintext"> _ZN4GStr8new_dataEjj@Base 0.11.2</span>
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241
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="plaintext"> _ZN4GStr9appendfmtEPKcz@Base 0.11.2</span>
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242
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="plaintext"> _ZN4GStr9appendmemEPKci@Base 0.11.2</span>
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243
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="plaintext"> _ZN4GStr9nextTokenERS_@Base 0.11.2</span>
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244
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<pre style="margin: 0;">+<span id="LC244" class="line" lang="plaintext"> _ZN4GStr9null_dataE@Base 0.11.2</span>
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266
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267
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268
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269
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="plaintext"> _ZN5GASeq14printGappedSeqEP8_IO_FILEi@Base 0.11.2</span>
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271
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<pre style="margin: 0;">+<span id="LC271" class="line" lang="plaintext"> _ZN5GASeq14refineClippingER9GDynArrayIcEib@Base 0.11.2</span>
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272
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="plaintext"> _ZN5GASeq14removeClipGapsEv@Base 0.11.2</span>
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273
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="plaintext"> _ZN5GASeq16printGappedFastaEP8_IO_FILE@Base 0.11.2</span>
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274
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="plaintext"> _ZN5GASeq5toMSAER10MSAColumnsi@Base 0.11.2</span>
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275
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="plaintext"> _ZN5GASeq6addGapEis@Base 0.11.2</span>
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276
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="plaintext"> _ZN5GASeq6setGapEis@Base 0.11.2</span>
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277
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="plaintext"> _ZN5GASeq7prepSeqEv@Base 0.11.2</span>
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278
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="plaintext"> _ZN5GASeq8finalizeEv@Base 0.11.2</span>
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279
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="plaintext"> _ZN5GASeqC1EPKcS1_S1_ii@Base 0.11.2</span>
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280
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="plaintext"> _ZN5GASeqC1EPKciiiic@Base 0.11.2</span>
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281
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<pre style="margin: 0;">+<span id="LC281" class="line" lang="plaintext"> _ZN5GASeqC1ER8FastaSeqb@Base 0.11.2</span>
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282
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="plaintext"> _ZN5GASeqC1ERS_@Base 0.11.2</span>
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283
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<pre style="margin: 0;">+<span id="LC283" class="line" lang="plaintext"> _ZN5GASeqC2EPKcS1_S1_ii@Base 0.11.2</span>
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284
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<pre style="margin: 0;">+<span id="LC284" class="line" lang="plaintext"> _ZN5GASeqC2EPKciiiic@Base 0.11.2</span>
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285
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<pre style="margin: 0;">+<span id="LC285" class="line" lang="plaintext"> _ZN5GASeqC2ER8FastaSeqb@Base 0.11.2</span>
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286
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<pre style="margin: 0;">+<span id="LC286" class="line" lang="plaintext"> _ZN5GASeqC2ERS_@Base 0.11.2</span>
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287
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<pre style="margin: 0;">+<span id="LC287" class="line" lang="plaintext"> _ZN5GASeqD1Ev@Base 0.11.2</span>
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288
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<pre style="margin: 0;">+<span id="LC288" class="line" lang="plaintext"> _ZN5GASeqD2Ev@Base 0.11.2</span>
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289
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="plaintext"> _ZN5GArgs10getOptNameEi@Base 0.11.2</span>
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290
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<pre style="margin: 0;">+<span id="LC290" class="line" lang="plaintext"> _ZN5GArgs10nextNonOptEv@Base 0.11.2</span>
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291
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<pre style="margin: 0;">+<span id="LC291" class="line" lang="plaintext"> _ZN5GArgs10printErrorEP8_IO_FILEPKcb@Base 0.11.2</span>
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292
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<pre style="margin: 0;">+<span id="LC292" class="line" lang="plaintext"> _ZN5GArgs10printErrorEPKcb@Base 0.11.2</span>
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293
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<pre style="margin: 0;">+<span id="LC293" class="line" lang="plaintext"> _ZN5GArgs11startNonOptEv@Base 0.11.2</span>
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294
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<pre style="margin: 0;">+<span id="LC294" class="line" lang="plaintext"> _ZN5GArgs12printCmdLineEP8_IO_FILE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC295" class="line" lang="plaintext"> _ZN5GArgs12validLongOptEPcS0_@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC296" class="line" lang="plaintext"> _ZN5GArgs13validShortOptEc@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC297" class="line" lang="plaintext"> _ZN5GArgs6getOptEPKc@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC298" class="line" lang="plaintext"> _ZN5GArgs6getOptEc@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC299" class="line" lang="plaintext"> _ZN5GArgs6getOptEi@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC301" class="line" lang="plaintext"> _ZN5GArgs7nextOptEv@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC315" class="line" lang="plaintext"> _ZN5GListI6GXBandE18DefaultCompareProcEPvS2_@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC316" class="line" lang="plaintext"> _ZN5GListI6GXSeedE18DefaultCompareProcEPvS2_@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC317" class="line" lang="plaintext"> _ZN5GListI6GffObjE18DefaultCompareProcEPvS2_@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC318" class="line" lang="plaintext"> _ZN5GListI6NucOriE18DefaultCompareProcEPvS2_@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC319" class="line" lang="plaintext"> _ZN5GListI7GffAttrE18DefaultCompareProcEPvS2_@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC322" class="line" lang="plaintext"> _ZN5GListI9GFastaRecE18DefaultCompareProcEPvS2_@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC344" class="line" lang="plaintext"> _ZN6GffObj12getUnsplicedEP9GFaSeqGetPiP12GMapSegments@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC345" class="line" lang="plaintext"> _ZN6GffObj12printGxfExonEP8_IO_FILEPKcS3_bP7GffExonbbPci@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC346" class="line" lang="plaintext"> _ZN6GffObj12printSummaryEP8_IO_FILE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC347" class="line" lang="plaintext"> _ZN6GffObj13expandSegmentER5GListI7GffExonEijja@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC348" class="line" lang="plaintext"> _ZN6GffObj13printExonListEP8_IO_FILE@Base 0.11.2</span>
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349
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<pre style="margin: 0;">+<span id="LC349" class="line" lang="plaintext"> _ZN6GffObj14decodeHexCharsEPcPKci@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC350" class="line" lang="plaintext"> _ZN6GffObj14exonOverlapIdxER5GListI7GffExonEjjPii@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC351" class="line" lang="plaintext"> _ZN6GffObj14removeExonAttrER7GffExonPKcS3_@Base 0.11.2</span>
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352
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<pre style="margin: 0;">+<span id="LC352" class="line" lang="plaintext"> _ZN6GffObj14removeExonAttrER7GffExoniPKc@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC353" class="line" lang="plaintext"> _ZN6GffObj14setFeatureNameEPKc@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC354" class="line" lang="plaintext"> _ZN6GffObj14updateCDSPhaseER5GListI7GffExonE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC355" class="line" lang="plaintext"> _ZN6GffObj15reduceExonAttrsER5GListI7GffExonE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC356" class="line" lang="plaintext"> _ZN6GffObj19processGeneSegmentsEP9GffReader@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC357" class="line" lang="plaintext"> _ZN6GffObj5namesE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC358" class="line" lang="plaintext"> _ZN6GffObj6setCDSEPS_@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC359" class="line" lang="plaintext"> _ZN6GffObj6setCDSEjjc@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC360" class="line" lang="plaintext"> _ZN6GffObj7addAttrEPKcS1_@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC361" class="line" lang="plaintext"> _ZN6GffObj7addExonER5GListI7GffExonER7GffLinea@Base 0.11.2</span>
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362
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<pre style="margin: 0;">+<span id="LC362" class="line" lang="plaintext"> _ZN6GffObj7addExonEjjac8GffScoreP5GListI7GffExonE@Base 0.11.2</span>
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363
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<pre style="margin: 0;">+<span id="LC363" class="line" lang="plaintext"> _ZN6GffObj8finalizeEP9GffReader@Base 0.11.2</span>
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364
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<pre style="margin: 0;">+<span id="LC364" class="line" lang="plaintext"> _ZN6GffObj8printBEDEP8_IO_FILEbPci@Base 0.11.2</span>
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365
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<pre style="margin: 0;">+<span id="LC365" class="line" lang="plaintext"> _ZN6GffObj8printGxfEP8_IO_FILE12GffPrintModePKcS4_b@Base 0.11.2</span>
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366
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<pre style="margin: 0;">+<span id="LC366" class="line" lang="plaintext"> _ZN6GffObj8readExonER9GffReaderR7GffLine@Base 0.11.2</span>
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367
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<pre style="margin: 0;">+<span id="LC367" class="line" lang="plaintext"> _ZN6GffObj9copyAttrsEPS_@Base 0.11.2</span>
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368
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<pre style="margin: 0;">+<span id="LC368" class="line" lang="plaintext"> _ZN6GffObj9getCDSegsER4GVecI7GffExonE@Base 0.11.2</span>
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369
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<pre style="margin: 0;">+<span id="LC369" class="line" lang="plaintext"> _ZN6GffObj9printGTabEP8_IO_FILEPPc@Base 0.11.2</span>
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370
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<pre style="margin: 0;">+<span id="LC370" class="line" lang="plaintext"> _ZN6GffObj9whichExonEjP5GListI7GffExonE@Base 0.11.2</span>
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371
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<pre style="margin: 0;">+<span id="LC371" class="line" lang="plaintext"> _ZN6GffObjC1ER9GffReaderR7BEDLine@Base 0.11.2</span>
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372
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<pre style="margin: 0;">+<span id="LC372" class="line" lang="plaintext"> _ZN6GffObjC1ER9GffReaderR7GffLine@Base 0.11.2</span>
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373
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<pre style="margin: 0;">+<span id="LC373" class="line" lang="plaintext"> _ZN6GffObjC2ER9GffReaderR7BEDLine@Base 0.11.2</span>
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374
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<pre style="margin: 0;">+<span id="LC374" class="line" lang="plaintext"> _ZN6GffObjC2ER9GffReaderR7GffLine@Base 0.11.2</span>
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375
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<pre style="margin: 0;">+<span id="LC375" class="line" lang="plaintext"> _ZN7BEDLineC1EP9GffReaderPKc@Base 0.11.2</span>
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376
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<pre style="margin: 0;">+<span id="LC376" class="line" lang="plaintext"> _ZN7BEDLineC2EP9GffReaderPKc@Base 0.11.2</span>
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377
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<pre style="margin: 0;">+<span id="LC377" class="line" lang="plaintext"> _ZN7GSocket12getLocalPortEv@Base 0.11.2</span>
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378
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<pre style="margin: 0;">+<span id="LC378" class="line" lang="plaintext"> _ZN7GSocket12setLocalPortEt@Base 0.11.2</span>
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379
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<pre style="margin: 0;">+<span id="LC379" class="line" lang="plaintext"> _ZN7GSocket14resolveServiceERK4GStrS2_@Base 0.11.2</span>
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380
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<pre style="margin: 0;">+<span id="LC380" class="line" lang="plaintext"> _ZN7GSocket15getLocalAddressEv@Base 0.11.2</span>
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381
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<pre style="margin: 0;">+<span id="LC381" class="line" lang="plaintext"> _ZN7GSocket22setLocalAddressAndPortERK4GStrt@Base 0.11.2</span>
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382
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<pre style="margin: 0;">+<span id="LC382" class="line" lang="plaintext"> _ZN7GSocket7cleanUpEv@Base 0.11.2</span>
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383
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<pre style="margin: 0;">+<span id="LC383" class="line" lang="plaintext"> _ZN7GSocketC1Eii@Base 0.11.2</span>
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384
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<pre style="margin: 0;">+<span id="LC384" class="line" lang="plaintext"> _ZN7GSocketC2Eii@Base 0.11.2</span>
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385
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<pre style="margin: 0;">+<span id="LC385" class="line" lang="plaintext"> _ZN7GSocketD1Ev@Base 0.11.2</span>
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386
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<pre style="margin: 0;">+<span id="LC386" class="line" lang="plaintext"> _ZN7GSocketD2Ev@Base 0.11.2</span>
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387
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<pre style="margin: 0;">+<span id="LC387" class="line" lang="plaintext"> _ZN7GSubSeq5setupEjiiiij@Base 0.11.2</span>
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388
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<pre style="margin: 0;">+<span id="LC388" class="line" lang="plaintext"> _ZN7GThread11num_createdE@Base 0.11.2</span>
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389
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<pre style="margin: 0;">+<span id="LC389" class="line" lang="plaintext"> _ZN7GThread14update_counterEiPS_@Base 0.11.2</span>
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390
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<pre style="margin: 0;">+<span id="LC390" class="line" lang="plaintext"> _ZN7GThread16wrapper_functionEPv@Base 0.11.2</span>
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391
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<pre style="margin: 0;">+<span id="LC391" class="line" lang="plaintext"> _ZN7GThread20hardware_concurrencyEv@Base 0.11.2</span>
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392
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<pre style="margin: 0;">+<span id="LC392" class="line" lang="plaintext"> _ZN7GThread4joinEv@Base 0.11.2</span>
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393
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<pre style="margin: 0;">+<span id="LC393" class="line" lang="plaintext"> _ZN7GThread6detachEv@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC394" class="line" lang="plaintext"> _ZN7GThread8tcounterE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC395" class="line" lang="plaintext"> _ZN7GThread8wait_allEv@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC396" class="line" lang="plaintext"> _ZN7GThread9initStartEPvm@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC397" class="line" lang="plaintext"> _ZN7GThread9kickStartEPFvPvES0_m@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC398" class="line" lang="plaintext"> _ZN7GThread9kickStartEPFvR11GThreadDataEPvm@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC399" class="line" lang="plaintext"> _ZN7GThreadC1EPFvPvES0_m@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC400" class="line" lang="plaintext"> _ZN7GThreadC1EPFvR11GThreadDataEPvm@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC401" class="line" lang="plaintext"> _ZN7GThreadC2EPFvPvES0_m@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC402" class="line" lang="plaintext"> _ZN7GThreadC2EPFvR11GThreadDataEPvm@Base 0.11.2</span>
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403
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<pre style="margin: 0;">+<span id="LC403" class="line" lang="plaintext"> _ZN7GThreadD1Ev@Base 0.11.2</span>
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404
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<pre style="margin: 0;">+<span id="LC404" class="line" lang="plaintext"> _ZN7GThreadD2Ev@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC405" class="line" lang="plaintext"> _ZN7GffLine14extractGFFAttrERPcPKcS3_bbPib@Base 0.11.2</span>
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406
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<pre style="margin: 0;">+<span id="LC406" class="line" lang="plaintext"> _ZN7GffLine16parseSegmentListER4GVecI4GSegEPc@Base 0.11.2</span>
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407
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<pre style="margin: 0;">+<span id="LC407" class="line" lang="plaintext"> _ZN7GffLineC1EP9GffReaderPKc@Base 0.11.2</span>
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408
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<pre style="margin: 0;">+<span id="LC408" class="line" lang="plaintext"> _ZN7GffLineC2EP9GffReaderPKc@Base 0.11.2</span>
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409
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<pre style="margin: 0;">+<span id="LC409" class="line" lang="plaintext"> _ZN8GCdbRead4findEPKc@Base 0.11.2</span>
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410
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<pre style="margin: 0;">+<span id="LC410" class="line" lang="plaintext"> _ZN8GCdbRead4readEPcjj@Base 0.11.2</span>
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411
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<pre style="margin: 0;">+<span id="LC411" class="line" lang="plaintext"> _ZN8GCdbRead5matchEPKcjj@Base 0.11.2</span>
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412
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<pre style="margin: 0;">+<span id="LC412" class="line" lang="plaintext"> _ZN8GCdbRead8findnextEPKcj@Base 0.11.2</span>
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413
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<pre style="margin: 0;">+<span id="LC413" class="line" lang="plaintext"> _ZN8GCdbReadC1EPc@Base 0.11.2</span>
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414
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<pre style="margin: 0;">+<span id="LC414" class="line" lang="plaintext"> _ZN8GCdbReadC1Ei@Base 0.11.2</span>
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415
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<pre style="margin: 0;">+<span id="LC415" class="line" lang="plaintext"> _ZN8GCdbReadC2EPc@Base 0.11.2</span>
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416
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<pre style="margin: 0;">+<span id="LC416" class="line" lang="plaintext"> _ZN8GCdbReadC2Ei@Base 0.11.2</span>
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417
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<pre style="margin: 0;">+<span id="LC417" class="line" lang="plaintext"> _ZN8GCdbReadD1Ev@Base 0.11.2</span>
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418
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<pre style="margin: 0;">+<span id="LC418" class="line" lang="plaintext"> _ZN8GCdbReadD2Ev@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC444" class="line" lang="plaintext"> _ZN9GCdbWrite6finishEv@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC445" class="line" lang="plaintext"> _ZN9GCdbWrite7posplusEj@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC447" class="line" lang="plaintext"> _ZN9GCdbWriteC1EPc@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC449" class="line" lang="plaintext"> _ZN9GCdbWriteC2EPc@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC451" class="line" lang="plaintext"> _ZN9GCdbWriteD1Ev@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC453" class="line" lang="plaintext"> _ZN9GFaSeqGet10loadsubseqEjRi@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC454" class="line" lang="plaintext"> _ZN9GFaSeqGet12initialParseElb@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC455" class="line" lang="plaintext"> _ZN9GFaSeqGet5finitEPKclb@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC456" class="line" lang="plaintext"> _ZN9GFaSeqGet6subseqEjRi@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC457" class="line" lang="plaintext"> _ZN9GFaSeqGet9copyRangeEjjbb@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC458" class="line" lang="plaintext"> _ZN9GFaSeqGetC1EP8_IO_FILElb@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC459" class="line" lang="plaintext"> _ZN9GFaSeqGetC1EPKcjlii@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC460" class="line" lang="plaintext"> _ZN9GFaSeqGetC2EP8_IO_FILElb@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC461" class="line" lang="plaintext"> _ZN9GFaSeqGetC2EPKcjlii@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC462" class="line" lang="plaintext"> _ZN9GSeqAlign10ErrZeroCovEi@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC463" class="line" lang="plaintext"> _ZN9GSeqAlign10removeBaseEP5GASeqi@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC464" class="line" lang="plaintext"> _ZN9GSeqAlign12evalClippingEP5GASeqiifR10AlnClipOps@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC465" class="line" lang="plaintext"> _ZN9GSeqAlign12removeColumnEi@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC466" class="line" lang="plaintext"> _ZN9GSeqAlign13applyClippingER10AlnClipOps@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC467" class="line" lang="plaintext"> _ZN9GSeqAlign13revComplementEv@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC468" class="line" lang="plaintext"> _ZN9GSeqAlign15extendConsensusEcs@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC469" class="line" lang="plaintext"> _ZN9GSeqAlign5printEP8_IO_FILEc@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC470" class="line" lang="plaintext"> _ZN9GSeqAlign6addSeqEP5GASeqii@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC471" class="line" lang="plaintext"> _ZN9GSeqAlign7freeMSAEv@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC472" class="line" lang="plaintext"> _ZN9GSeqAlign8addAlignEP5GASeqPS_S1_@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC473" class="line" lang="plaintext"> _ZN9GSeqAlign8buildMSAEb@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC474" class="line" lang="plaintext"> _ZN9GSeqAlign8finalizeEv@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC475" class="line" lang="plaintext"> _ZN9GSeqAlign8writeACEEP8_IO_FILEPKcb@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC476" class="line" lang="plaintext"> _ZN9GSeqAlign8writeMSAEP8_IO_FILEi@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC477" class="line" lang="plaintext"> _ZN9GSeqAlign9injectGapEP5GASeqii@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC478" class="line" lang="plaintext"> _ZN9GSeqAlign9refineMSAEbb@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC479" class="line" lang="plaintext"> _ZN9GSeqAlign9writeInfoEP8_IO_FILEPKcb@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC480" class="line" lang="plaintext"> _ZN9GSeqAlignC1EP5GASeqS1_@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC481" class="line" lang="plaintext"> _ZN9GSeqAlignC2EP5GASeqS1_@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC482" class="line" lang="plaintext"> _ZN9GXMemPool9kMinSpaceE@Base 0.11.2</span>
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483
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<pre style="margin: 0;">+<span id="LC483" class="line" lang="plaintext"> _ZN9GffReader10gfoBuildIdEPKcS1_@Base 0.11.2</span>
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484
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<pre style="margin: 0;">+<span id="LC484" class="line" lang="plaintext"> _ZN9GffReader10gfoReplaceER5GPVecI6GffObjEPS1_S4_@Base 0.11.2</span>
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485
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<pre style="margin: 0;">+<span id="LC485" class="line" lang="plaintext"> _ZN9GffReader11nextBEDLineEv@Base 0.11.2</span>
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486
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<pre style="margin: 0;">+<span id="LC486" class="line" lang="plaintext"> _ZN9GffReader11nextGffLineEv@Base 0.11.2</span>
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487
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<pre style="margin: 0;">+<span id="LC487" class="line" lang="plaintext"> _ZN9GffReader11subfPoolAddER5GHashI8CNonExonEP6GffObj@Base 0.11.2</span>
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488
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<pre style="margin: 0;">+<span id="LC488" class="line" lang="plaintext"> _ZN9GffReader12updateGffRecEP6GffObjP7GffLine@Base 0.11.2</span>
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489
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<pre style="margin: 0;">+<span id="LC489" class="line" lang="plaintext"> _ZN9GffReader12updateParentEP6GffObjS1_@Base 0.11.2</span>
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490
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<pre style="margin: 0;">+<span id="LC490" class="line" lang="plaintext"> _ZN9GffReader13subfPoolCheckEP7GffLineR5GHashI8CNonExonERPc@Base 0.11.2</span>
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491
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<pre style="margin: 0;">+<span id="LC491" class="line" lang="plaintext"> _ZN9GffReader14promoteFeatureEP8CNonExonRPcR5GHashIS0_E@Base 0.11.2</span>
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492
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<pre style="margin: 0;">+<span id="LC492" class="line" lang="plaintext"> _ZN9GffReader15readExonFeatureEP6GffObjP7GffLineP5GHashI8CNonExonE@Base 0.11.2</span>
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493
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<pre style="margin: 0;">+<span id="LC493" class="line" lang="plaintext"> _ZN9GffReader5pFindEPKcRP5GPVecI6GffObjE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC494" class="line" lang="plaintext"> _ZN9GffReader6gfoAddEP6GffObj@Base 0.11.2</span>
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495
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<pre style="margin: 0;">+<span id="LC495" class="line" lang="plaintext"> _ZN9GffReader6gfoAddER5GPVecI6GffObjEPS1_@Base 0.11.2</span>
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496
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<pre style="margin: 0;">+<span id="LC496" class="line" lang="plaintext"> _ZN9GffReader7gfoFindEPKcRP5GPVecI6GffObjES1_cjj@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC497" class="line" lang="plaintext"> _ZN9GffReader7readAllEv@Base 0.11.2</span>
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498
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<pre style="margin: 0;">+<span id="LC498" class="line" lang="plaintext"> _ZN9GffReader8readNextEv@Base 0.11.2</span>
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499
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<pre style="margin: 0;">+<span id="LC499" class="line" lang="plaintext"> _ZN9GffReader9newGffRecEP7BEDLineP5GPVecI6GffObjE@Base 0.11.2</span>
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500
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<pre style="margin: 0;">+<span id="LC500" class="line" lang="plaintext"> _ZN9GffReader9newGffRecEP7GffLineP6GffObjP7GffExonP5GPVecIS2_Eb@Base 0.11.2</span>
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501
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<pre style="margin: 0;">+<span id="LC501" class="line" lang="plaintext"> _ZNK4GStr10startsWithEPKc@Base 0.11.2</span>
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502
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<pre style="margin: 0;">+<span id="LC502" class="line" lang="plaintext"> _ZNK4GStr10startsWithERKS_@Base 0.11.2</span>
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503
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<pre style="margin: 0;">+<span id="LC503" class="line" lang="plaintext"> _ZNK4GStr4copyEv@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC504" class="line" lang="plaintext"> _ZNK4GStr5indexEPKci@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC505" class="line" lang="plaintext"> _ZNK4GStr5indexERKS_i@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC506" class="line" lang="plaintext"> _ZNK4GStr5indexEci@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC507" class="line" lang="plaintext"> _ZNK4GStr6rindexEPKci@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC508" class="line" lang="plaintext"> _ZNK4GStr6rindexEci@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC509" class="line" lang="plaintext"> _ZNK4GStr6substrEii@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC510" class="line" lang="plaintext"> _ZNK4GStr7peelIntEv@Base 0.11.2</span>
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511
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<pre style="margin: 0;">+<span id="LC511" class="line" lang="plaintext"> _ZNK4GStr8containsEPKc@Base 0.11.2</span>
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512
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<pre style="margin: 0;">+<span id="LC512" class="line" lang="plaintext"> _ZNK4GStr8containsERKS_@Base 0.11.2</span>
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513
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<pre style="margin: 0;">+<span id="LC513" class="line" lang="plaintext"> _ZNK4GStr8containsEc@Base 0.11.2</span>
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514
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<pre style="margin: 0;">+<span id="LC514" class="line" lang="plaintext"> _ZNK4GStr8endsWithEPKc@Base 0.11.2</span>
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515
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<pre style="margin: 0;">+<span id="LC515" class="line" lang="plaintext"> _ZNK4GStr8endsWithERKS_@Base 0.11.2</span>
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516
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<pre style="margin: 0;">+<span id="LC516" class="line" lang="plaintext"> _ZNK4GStr8is_emptyEv@Base 0.11.2</span>
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517
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<pre style="margin: 0;">+<span id="LC517" class="line" lang="plaintext"> _ZNK4GStr8is_spaceEv@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC522" class="line" lang="plaintext"> _ZNK4GStrgeERKS_@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC558" class="line" lang="plaintext"> _ZTS4GVecIiE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC559" class="line" lang="plaintext"> _ZTS4GVecItE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC561" class="line" lang="plaintext"> _ZTS5GHashI8CNonExonE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC562" class="line" lang="plaintext"> _ZTS5GListI5GASeqE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC564" class="line" lang="plaintext"> _ZTS5GListI6GXSeedE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC565" class="line" lang="plaintext"> _ZTS5GListI6GffObjE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC566" class="line" lang="plaintext"> _ZTS5GListI6NucOriE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC567" class="line" lang="plaintext"> _ZTS5GListI7GffAttrE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC568" class="line" lang="plaintext"> _ZTS5GListI7GffExonE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC569" class="line" lang="plaintext"> _ZTS5GListI8SeqDelOpE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC570" class="line" lang="plaintext"> _ZTS5GListI9GFastaRecE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC571" class="line" lang="plaintext"> _ZTS5GListI9GXAlnInfoE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC572" class="line" lang="plaintext"> _ZTS5GPVecI11GffNameInfoE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC573" class="line" lang="plaintext"> _ZTS5GPVecI5GASeqE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC574" class="line" lang="plaintext"> _ZTS5GPVecI6GXBandE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC575" class="line" lang="plaintext"> _ZTS5GPVecI6GXSeedE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC576" class="line" lang="plaintext"> _ZTS5GPVecI6GffObjE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC577" class="line" lang="plaintext"> _ZTS5GPVecI6NucOriE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC578" class="line" lang="plaintext"> _ZTS5GPVecI7GffAttrE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC579" class="line" lang="plaintext"> _ZTS5GPVecI7GffExonE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC580" class="line" lang="plaintext"> _ZTS5GPVecI8SeqDelOpE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC584" class="line" lang="plaintext"> _ZTS9GDynArrayIPcE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC586" class="line" lang="plaintext"> _ZTS9GDynArrayIsE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC589" class="line" lang="plaintext"> _ZZN7GThread11num_runningEvE5vLock@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC590" class="line" lang="plaintext"> _ZeqPKcRK4GStr@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC591" class="line" lang="plaintext"> _ZgtPKcRK4GStr@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC592" class="line" lang="plaintext"> _ZlePKcRK4GStr@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC593" class="line" lang="plaintext"> _ZltPKcRK4GStr@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC594" class="line" lang="plaintext"> _ZplPKcRK4GStr@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC595" class="line" lang="plaintext"> cdbInfoSIZE@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC596" class="line" lang="plaintext"> endianSetup@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC597" class="line" lang="plaintext"> error_intr@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC598" class="line" lang="plaintext"> error_nomem@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC599" class="line" lang="plaintext"> error_proto@Base 0.11.2</span>
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<pre style="margin: 0;">+<span id="LC600" class="line" lang="plaintext"> exonTypes@Base 0.11.2</span>
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601
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<pre style="margin: 0;">+<span id="LC601" class="line" lang="plaintext"> gcvt_int16@Base 0.11.2</span>
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602
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<pre style="margin: 0;">+<span id="LC602" class="line" lang="plaintext"> gcvt_offt@Base 0.11.2</span>
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603
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<pre style="margin: 0;">+<span id="LC603" class="line" lang="plaintext"> gcvt_uint@Base 0.11.2</span>
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604
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<pre style="margin: 0;">+<span id="LC604" class="line" lang="plaintext"> gff_fid_CDS@Base 0.11.2</span>
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605
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<pre style="margin: 0;">+<span id="LC605" class="line" lang="plaintext"> gff_fid_exon@Base 0.11.2</span>
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606
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<pre style="margin: 0;">+<span id="LC606" class="line" lang="plaintext"> gff_fid_mRNA@Base 0.11.2</span>
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607
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<pre style="margin: 0;">+<span id="LC607" class="line" lang="plaintext"> gff_fid_transcript@Base 0.11.2</span>
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608
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<pre style="margin: 0;">+<span id="LC608" class="line" lang="plaintext"> irec_size32@Base 0.11.2</span>
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609
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<pre style="margin: 0;">+<span id="LC609" class="line" lang="plaintext"> xgapcodes@Base 0.11.2</span></pre>
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<li id="6d5507768ac8975f221ead23baef90cb894ce802">
<a href="https://salsa.debian.org/med-team/libgclib/compare/3a229756b66e6d04b118ec30da4a29bf304eabec...6572cc68344d2464b1e58d4128e3a56c2c7d65b1#6d5507768ac8975f221ead23baef90cb894ce802"><strong>debian/patches/autoconf.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,7 +4,7 @@ Descriptions: Build proper libraries via automake</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- /dev/null</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/Makefile.am</span></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -0,0 +1,3<span class="idiff left right">2</span> @@</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -0,0 +1,3<span class="idiff left right">8</span> @@</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+lib_LTLIBRARIES = libgclib.la</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+libgclibdir=$(includedir)</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,7 +16,6 @@ Descriptions: Build proper libraries via automake</td>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ GBase.cpp \</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ gcdb.cpp \</span></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ GCdbYank.cpp \</span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ gdimg.cpp \</span></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ gdna.cpp \</span></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ GFaSeqGet.cpp \</span></span>
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21
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ GFastaIndex.cpp \</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -24,11 +23,14 @@ Descriptions: Build proper libraries via automake</td>
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24
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ gsocket.cpp \</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ gstopwatch.cpp \</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ GStr.cpp \</span></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ gtest.cpp \</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ GThreads.cpp</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# GBam.cpp # Exists but is not build by upstream Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# gdimg.cpp # Not build by upstream Makefile</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# # Would introduce unneeded dependency from libgd-dev</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# GBam.cpp # is not build by upstream Makefile</span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# # Would need bam.h / sam.h</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# gtest.cpp # Seems to be just a test (FIXME: create autopkgtest from it)</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+libgclib_la_LDFLAGS = -version-info @LIB_VERSION@</span></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -37,6 +39,10 @@ Descriptions: Build proper libraries via automake</td>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+pkgconfigdir=$(libdir)/pkgconfig</span></span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+pkgconfig_DATA = libgclib.pc</span></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# FIXME: Build mdtest to properly test the lib. The code below does not work</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# mdtest_SOURCES = mdtest.cpp libgclib.a</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# mdtest_LDADD = -L. -lgclib</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# bin_PROGRAMS = mdtest</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- /dev/null</span></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ b/libgclib.pc.in</span></span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -0,0 +1,11 @@</span></span>
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<a href="https://salsa.debian.org/med-team/libgclib/compare/3a229756b66e6d04b118ec30da4a29bf304eabec...6572cc68344d2464b1e58d4128e3a56c2c7d65b1#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -23,3 +23,6 @@ override_dh_install:</td>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> debian/tmp/usr/lib/*/*.so</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> mkdir debian/$(DEB_SOURCE)-dev/usr/include/gclib</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> mv debian/$(DEB_SOURCE)-dev/usr/include/*.h* debian/$(DEB_SOURCE)-dev/usr/include/gclib</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> # delete header files of not compiled C++ source files</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> find debian/$(DEB_SOURCE)-dev -name gdimg.h -delete</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> find debian/$(DEB_SOURCE)-dev -name GBam.h -delete</span></pre>
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<a href="https://salsa.debian.org/med-team/libgclib/compare/3a229756b66e6d04b118ec30da4a29bf304eabec...6572cc68344d2464b1e58d4128e3a56c2c7d65b1#83223a554d33ba7e1888274ff8ac43adb8147ba0"><strong>debian/tests/control</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">Tests: run-unit-test</span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">Depends: @</span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">Restrictions: allow-stderr</span></pre>
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<a href="https://salsa.debian.org/med-team/libgclib/compare/3a229756b66e6d04b118ec30da4a29bf304eabec...6572cc68344d2464b1e58d4128e3a56c2c7d65b1#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#!/bin/bash</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="shell"><span class="nb" style="color: #0086b3;">set</span> <span class="nt" style="color: #000080;">-e</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="shell"></span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="shell"><span class="nv" style="color: #008080;">pkg</span><span class="o" style="font-weight: 600;">=</span><span class="c" style="color: #998; font-style: italic;">#PACKAGENAME#</span></span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="shell"></span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="o" style="font-weight: 600;">[</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">=</span> <span class="s2" style="color: #d14;">""</span> <span class="o" style="font-weight: 600;">]</span> <span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="o" style="font-weight: 600;">=</span><span class="k" style="font-weight: 600;">$(</span><span class="nb" style="color: #0086b3;">mktemp</span> <span class="nt" style="color: #000080;">-d</span> /tmp/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span><span class="nt" style="color: #000080;">-test</span>.XXXXXX<span class="k" style="font-weight: 600;">)</span></span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># Double quote below to expand the temporary directory variable now versus</span></span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># later is on purpose.</span></span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># shellcheck disable=SC2064</span></span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">trap</span> <span class="s2" style="color: #d14;">"rm -rf </span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> 0 INT QUIT ABRT PIPE TERM</span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="shell"><span class="k" style="font-weight: 600;">fi</span></span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="shell"></span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: #000080;">-a</span> /usr/share/doc/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span>/examples/<span class="k" style="font-weight: 600;">*</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span></span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="shell"></span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span></span>
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17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="shell"></span>
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18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#do_stuff_to_test_package#</span></span></pre>
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