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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/bcbio">Debian Med / bcbio</a>
</h3>
<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/2e244db1de811660f590c8d9c3820819b7021d42">2e244db1</a></strong>
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<span>by Andreas Tille</span>
<i>at 2019-06-15T05:45:49Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update TODO
</pre>
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<h4>1 changed file:</h4>
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debian/TODO
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<h4>Changes:</h4>
<li id="d9d67e646e83973f5e1d6cd63fe8c9dffb33ebba">
<a href="https://salsa.debian.org/med-team/bcbio/commit/2e244db1de811660f590c8d9c3820819b7021d42#d9d67e646e83973f5e1d6cd63fe8c9dffb33ebba"><strong>debian/TODO</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -41,16 +41,16 @@ package tophat-recondition</td>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="mosel"><span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">wham</span></span>
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42
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="mosel"> <span class="n" style="color: #333;">http</span><span class="p">://</span><span class="n" style="color: #333;">research</span><span class="p">.</span><span class="n" style="color: #333;">cs</span><span class="p">.</span><span class="n" style="color: #333;">wisc</span><span class="p">.</span><span class="n" style="color: #333;">edu</span><span class="p">/</span><span class="n" style="color: #333;">wham</span><span class="p">/</span> <span class="p">(</span><span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">new</span> <span class="n" style="color: #333;">queue</span><span class="p">)</span></span>
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43
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="mosel"><span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">gffread</span></span>
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<td class="diff-line-num new new_line" data-linenumber="45" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">gffread</span> <span class="p">(</span><span class="k" style="font-weight: 600;">in</span> <span class="n" style="color: #333;">new</span> <span class="n" style="color: #333;">queue</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="mosel"></span>
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<td class="diff-line-num new_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="mosel"><span class="n" style="color: #333;">Packages</span> <span class="n" style="color: #333;">just</span> <span class="n" style="color: #333;">waiting</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">someone</span> <span class="n" style="color: #333;">addressing</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">last</span> <span class="n" style="color: #333;">mile</span> <span class="n" style="color: #333;">for</span> <span class="n" style="color: #333;">the</span> <span class="n" style="color: #333;">upload</span></span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="mosel"><span class="p">-------------------------------------------------------------------------</span></span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="mosel"></span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="mosel"><span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">gffread</span></span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;">med</span><span class="p">-</span><span class="n" style="color: #333;">team</span><span class="p">/</span><span class="n" style="color: #333;">gffread</span></span>
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="mosel"><span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">pyomo</span></span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">github</span><span class="p">.</span><span class="n" style="color: #333;">com</span><span class="p">/</span><span class="n" style="color: #333;">Pyomo</span><span class="p">/</span><span class="n" style="color: #333;">pyomo</span></span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;"><span class="idiff left">python</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">team</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">applications</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff">pyomo</span></span><span class="idiff"> </span><span class="p"><span class="idiff">-</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">builds</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">locally</span></span><span class="idiff"> </span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">Steffen</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">does</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">not</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">have</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">upload</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">privileges</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">some</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">tests</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">fail</span></span><span class="p"><span class="idiff right">)</span></span></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="mosel"> <span class="n" style="color: #333;">https</span><span class="p">://</span><span class="n" style="color: #333;">salsa</span><span class="p">.</span><span class="n" style="color: #333;">debian</span><span class="p">.</span><span class="n" style="color: #333;">org</span><span class="p">/</span><span class="n" style="color: #333;"><span class="idiff left">science</span></span><span class="p"><span class="idiff">-</span></span><span class="n" style="color: #333;"><span class="idiff">team</span></span><span class="p"><span class="idiff">/</span></span><span class="n" style="color: #333;"><span class="idiff right">pyomo</span></span></span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="mosel"> <span class="n" style="color: #333;">needed</span> <span class="n" style="color: #333;">by</span> <span class="n" style="color: #333;">optitype</span></span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="mosel"><span class="k" style="font-weight: 600;">package</span> <span class="n" style="color: #333;">pyutilib</span></span>
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