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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/bcbio">Debian Med / bcbio</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/bcbio/commit/7db28bc2f1c5da96528aca6da281914501807da5">7db28bc2</a></strong>
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<span>by Andreas Tille</span>
<i>at 2019-06-26T07:55:10Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">r-bioc-isomiRs - (needs r-bioc-DEGreport) Andreas volunteering to package pre-depends as for r-bioc-DEGreport
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<h4>1 changed file:</h4>
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<a href="#d9d67e646e83973f5e1d6cd63fe8c9dffb33ebba">
debian/TODO
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<h4>Changes:</h4>
<li id="d9d67e646e83973f5e1d6cd63fe8c9dffb33ebba">
<a href="https://salsa.debian.org/med-team/bcbio/commit/7db28bc2f1c5da96528aca6da281914501807da5#d9d67e646e83973f5e1d6cd63fe8c9dffb33ebba"><strong>debian/TODO</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -88,8 +88,8 @@ package seqcluster</td>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="mosel"><span class="s1" style="color: #d14;"> r-bioc-HTSFilter - Depends DESeq and edgeR which both in turn depend locfit which makes all non-free</span></span>
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<td class="diff-line-num old_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="mosel"><span class="s1" style="color: #d14;"> r-bioc-DEGreport - all pre-depends except edgeR are in new</span></span>
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<td class="diff-line-num old_line" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="mosel"><span class="s1" style="color: #d14;"> # novel packages</span></span>
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<td class="diff-line-num old old_line" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="mosel"><span class="s1" style="color: #d14;"> install.github("hbc/CHBUtils") - <span class="idiff left right">Andreas volunteering</span></span></span>
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<td class="diff-line-num old old_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="mosel"><span class="s1" style="color: #d14;"> <span class="idiff left right">install.github("lpantano/isomiRs", "master") - missing</span></span></span>
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<td class="diff-line-num new old_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="mosel"><span class="s1" style="color: #d14;"> install.github("hbc/CHBUtils") - <span class="idiff left right">Uploaded to new as r-other-chbutils_0.1+git20171026.a226cee-1</span></span></span>
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<td class="diff-line-num new old_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="mosel"><span class="s1" style="color: #d14;"> <span class="idiff left right">r-bioc-isomiRs - (needs r-bioc-DEGreport) Andreas volunteering to package pre-depends as for r-bioc-DEGreport</span></span></span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="mosel"><span class="s1" style="color: #d14;"> install_github('</span><span class="n" style="color: #333;">rstudio</span><span class="p">/</span><span class="n" style="color: #333;">rmarkdown</span><span class="s1" style="color: #d14;">') -- this may be the same we have from CRAN - not checked</span></span>
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<td class="diff-line-num old_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="mosel"><span class="s1" style="color: #d14;">package viennarna</span></span>
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