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<h3>
Saira Hussain pushed to branch master
at <a href="https://salsa.debian.org/med-team/hyphy">Debian Med / hyphy</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/commit/2abdd8063474579e6ce0600df62fc9166adc9ea2">2abdd806</a></strong>
<div>
<span>by Saira Hussain</span>
<i>at 2019-07-06T19:41:32Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add docs description file and rename executable
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/commit/5559524d811bab3f3fdacd32d63a290537b08b3a">5559524d</a></strong>
<div>
<span>by Saira Hussain</span>
<i>at 2019-07-06T19:41:48Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove superfluous files
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/commit/204a4b672c4d5945106bf24f381e2114e335609b">204a4b67</a></strong>
<div>
<span>by Saira Hussain</span>
<i>at 2019-07-06T19:41:48Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add cleanup code
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/commit/95d934ebd514e1efb8372e85696e898a40c7a24e">95d934eb</a></strong>
<div>
<span>by Saira Hussain</span>
<i>at 2019-07-06T19:41:57Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Include all the test suites
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/commit/90475cd54a7807fdd4511d1da4f46f15cde2fb33">90475cd5</a></strong>
<div>
<span>by Saira Hussain</span>
<i>at 2019-07-06T19:42:03Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove interactive tests
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/commit/9cc634c404ba148cd3a996c233bce3075c61d9b3">9cc634c4</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-07-06T19:42:03Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix typo
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/commit/04a1d298415009dc4ddaf2b139ea130f291ecaec">04a1d298</a></strong>
<div>
<span>by Saira Hussain</span>
<i>at 2019-07-06T19:42:11Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove more interactive tests
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/commit/f5d6c1fa8f34bd17d2260b57a11631696814b7f7">f5d6c1fa</a></strong>
<div>
<span>by Saira Hussain</span>
<i>at 2019-07-06T19:42:38Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge branch 'master' of salsa.debian.org:med-team/hyphy
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/commit/4fa4d9dae9287812cc5c9ac0cdb24cd0f603a47e">4fa4d9da</a></strong>
<div>
<span>by Saira Hussain</span>
<i>at 2019-07-07T11:32:00Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Divide failing tests
</pre>
</li>
</ul>
<h4>1 changed file:</h4>
<ul>
<li class="file-stats">
<a href="#b8880ead45e8d099a1552defb95ea70479f1572e">
debian/tests/run-unit-tests
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="b8880ead45e8d099a1552defb95ea70479f1572e">
<a href="https://salsa.debian.org/med-team/hyphy/compare/0d8c5e7f02874e269275406ef00929b37f26c55b...4fa4d9dae9287812cc5c9ac0cdb24cd0f603a47e#b8880ead45e8d099a1552defb95ea70479f1572e"><strong>debian/tests/run-unit-tests</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -18,7 +18,10 @@ cd "${AUTOPKGTEST_TMP}"</td>
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<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="shell"><span class="nb" style="color: #0086b3;">gunzip</span> <span class="nt" style="color: #000080;">-r</span> <span class="k" style="font-weight: 600;">*</span></span>
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<td class="diff-line-num old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="shell"></span>
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<td class="diff-line-num old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC20" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Remove tests that need UI</span></span>
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<td class="diff-line-num old old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="shell"><span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: #000080;">-f</span> ReplicateConstraint3.bf MolecularClockHKY85.bf F81K81uf_relratio.bf MolecularClockF81.bf definitions.bf definitions+MLE.bf</span>
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<td class="diff-line-num new old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="shell"><span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: #000080;">-f</span> ReplicateConstraint3.bf F81K81uf_relratio.bf definitions.bf definitions+MLE.bf</span>
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<td class="diff-line-num new old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="shell"></span>
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<td class="diff-line-num new old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Check why tests are failing</span></span>
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<td class="diff-line-num new new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="shell"><span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: #000080;">-f</span> MolecularClockHKY85.bf MolecularClockF81.bf FelativeRatePBS.bf</span>
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<td class="diff-line-num old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="shell"></span>
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<td class="diff-line-num old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Just for debugging</span></span>
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<td class="diff-line-num old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="shell"><span class="nb" style="color: #0086b3;">set</span> <span class="nt" style="color: #000080;">-x</span></span>
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