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<h3>
Alexandre Mestiashvili pushed to branch master
at <a href="https://salsa.debian.org/med-team/bowtie">Debian Med / bowtie</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie/commit/8fdd41caa10ed179fa67b07803e754b6faca52a5">8fdd41ca</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2019-07-10T15:14:53Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.2.3+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie/commit/caf88390a3ff062675bcd1ce928de4125867da7b">caf88390</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2019-07-10T15:15:05Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.2.3+dfsg'
Update to upstream version '1.2.3+dfsg'
with Debian dir 0a457a7d30ee14293333047af05ae8a6caacc50c</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie/commit/12bcf72fed31eee5e864037ddb5b43c675047264">12bcf72f</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2019-07-11T08:54:23Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Drop applied by upstream and refresh patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie/commit/77d240b9b0dadf5d239fe724d0298cd387a88ccf">77d240b9</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2019-07-11T08:55:38Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelog
Gbp-Dch: Ignore
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie/commit/abee45efd06f8978e014880c433be40f0e71beb1">abee45ef</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2019-07-11T12:43:21Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update spelling.patch
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie/commit/c3a7cb4ebb1a69ec11cc3068715bcfcbe6bcab13">c3a7cb4e</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2019-07-11T13:55:40Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add strip_html5shiv.patch, removing condition loading html5shiv for old IEs
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie/commit/2c1a550ba2a8d0e21c804895f6d17f68e4723b61">2c1a550b</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2019-07-11T13:57:33Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update d/control, remove version from seqan-dev, bump Policy to 4.4.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie/commit/a594569efe646837f66aaaa3a95cc14a8eccb281">a594569e</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2019-07-11T13:59:29Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Switch to debhelper-compat, drop d/compat
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie/commit/3b76ffd065a5c4c6a4c95fd179eb13abd9676632">3b76ffd0</a></strong>
<div>
<span>by Alexandre Mestiashvili</span>
<i>at 2019-07-11T14:09:57Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update changelog
Gbp-Dch: Ignore
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#f11fb3bba37e7060bedcd5895812b7c511c52651">
MANUAL
</a>
</li>
<li class="file-stats">
<a href="#465370da702349b6dcb3f9f2026872cad6877efa">
MANUAL.markdown
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#9f621eb5fd3bcb2fa5c7bd228c9b1ad42edc46c8">
NEWS
</a>
</li>
<li class="file-stats">
<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
VERSION
</a>
</li>
<li class="file-stats">
<a href="#03d5fe68cb76a542cb9c06b8e03093e21319ca35">
blockwise_sa.h
</a>
</li>
<li class="file-stats">
<a href="#b8ddec6e882fec88e9f73fc947f13f9d54d7043e">
bowtie
</a>
</li>
<li class="file-stats">
<a href="#dfe5e559b6d490c25075d3912c6d2202202c6f72">
bowtie-inspect
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#a9944d60bdae4ef514f79321c9f06142afc0bdc7">
<span class="deleted-file">
−
debian/patches/fix_isa_return.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#f538a565cba7a15bfc8a566b008158b7820facdd">
debian/patches/seqan-rename-ChunkPool.patch
</a>
</li>
<li class="file-stats">
<a href="#ec697ef90827a3a62ca1dfbf51ef9da4fcace115">
debian/patches/seqan-rename-fill-to-resize.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#45ae034d1d71b2d961abb7c91cf3d2f1a02a59c6">
debian/patches/spelling.patch
</a>
</li>
<li class="file-stats">
<a href="#f20e6ffddf104230814e48426b77469f12beb3fe">
<span class="new-file">
+
debian/patches/strip_html5shiv.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#ccc364c6c660e798a4f3c3b78119cbea257aee1e">
doc/manual.html
</a>
</li>
<li class="file-stats">
<a href="#7d1f14ddcc3a740e3eeeaf356b4b0393ca8a50d2">
doc/website/latest-version.txt
</a>
</li>
<li class="file-stats">
<a href="#a1ba375e8deab5b12b1347797835e927dca95425">
doc/website/manual.ssi
</a>
</li>
<li class="file-stats">
<a href="#9485aa1b2c39982f48264019fde0712132ed80f5">
doc/website/recent_news.ssi
</a>
</li>
<li class="file-stats">
<a href="#59bf596910fb7006481a4d8a45de81ff2bd75a4d">
doc/website/rhsidebar.ssi
</a>
</li>
<li class="file-stats">
<a href="#9d7499ab4e42602402431f6e62fc3bab4336a91e">
ebwt.cpp
</a>
</li>
<li class="file-stats">
<a href="#bdf1fda883543f04c4a046fdcaa8ba0db73fdb37">
ebwt.h
</a>
</li>
<li class="file-stats">
<a href="#3b01777a95af313429e4b310e9c1f9f64244744b">
ebwt_build.cpp
</a>
</li>
<li class="file-stats">
<a href="#325e44ac9e9631edc4f328e8eaa8247f8faaa318">
ebwt_search.cpp
</a>
</li>
<li class="file-stats">
<a href="#78173a2355322cb62fac5714cd9aa8361ca724e7">
filebuf.h
</a>
</li>
<li class="file-stats">
<a href="#f06297a2ada54367ed9d9c768f848c4726441af2">
hit.h
</a>
</li>
<li class="file-stats">
<a href="#7c4ae52e4a13c990d16c9530fb874ed79064a5cd">
pat.cpp
</a>
</li>
<li class="file-stats">
<a href="#feeebf6c8e249c25303af46ea1abd54e5f54b5db">
processor_support.h
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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<p style="font-size: small; color: #777;">
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