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<h3>
Shayan Doust pushed to branch master
at <a href="https://salsa.debian.org/med-team/mmseqs2">Debian Med / mmseqs2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/mmseqs2/commit/ce230ac7ed412da03fc5ee0c1527c92741332683">ce230ac7</a></strong>
<div>
<span>by Shayan Doust</span>
<i>at 2019-07-19T22:07:23Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add missing patch description
</pre>
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#440c642085f7a320c9870ee4706bd8dc91ae39dd">
debian/patches/fix_util_installation.patch
</a>
</li>
<li class="file-stats">
<a href="#4d2d1dbfde0122105c73301fc1bd4fcb620a3554">
debian/patches/use_system_gzstream.patch
</a>
</li>
<li class="file-stats">
<a href="#f36ce0394afd0663a362758627b7ecb71882e064">
debian/patches/use_system_zstd.patch
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="440c642085f7a320c9870ee4706bd8dc91ae39dd">
<a href="https://salsa.debian.org/med-team/mmseqs2/commit/ce230ac7ed412da03fc5ee0c1527c92741332683#440c642085f7a320c9870ee4706bd8dc91ae39dd"><strong>debian/patches/fix_util_installation.patch</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff">Description: Prevent CMake from installing util/</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff"> We handle this within *.installs ou<span class="idiff left right">t</span>selves</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"> We handle this within *.installs ou<span class="idiff left right">r</span>selves</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff">Author: Shayan Doust <hello@shayandoust.me></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff">Last-Update: 2019-07-16</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff">---</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gh" style="color: #999;">Index: mmseqs2/util/CMakeLists.txt</span></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- mmseqs2.orig/util/CMakeLists.txt</span></span>
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<li id="4d2d1dbfde0122105c73301fc1bd4fcb620a3554">
<a href="https://salsa.debian.org/med-team/mmseqs2/commit/ce230ac7ed412da03fc5ee0c1527c92741332683#4d2d1dbfde0122105c73301fc1bd4fcb620a3554"><strong>debian/patches/use_system_gzstream.patch</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,6 +2,7 @@ Description: We use libgzstream-dev instead of that in lib</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff">Author: Shayan Doust <hello@shayandoust.me></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="diff">Last-Update: 2019-07-15</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff">---</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gh" style="color: #999;">Index: mmseqs2/CMakeLists.txt</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- mmseqs2.orig/CMakeLists.txt</span></span>
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<li id="f36ce0394afd0663a362758627b7ecb71882e064">
<a href="https://salsa.debian.org/med-team/mmseqs2/commit/ce230ac7ed412da03fc5ee0c1527c92741332683#f36ce0394afd0663a362758627b7ecb71882e064"><strong>debian/patches/use_system_zstd.patch</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff">Description: Use_system_zstd</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff">Description: Use libzstd-dev instead of that in lib</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff">Author: Shayan Doust <hello@shayandoust.me></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff">Last-Update: 2019-07-19</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff">---</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gh" style="color: #999;">Index: mmseqs2/CMakeLists.txt</span></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- mmseqs2.orig/CMakeLists.txt</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ mmseqs2/CMakeLists.txt</span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -59,17 +59,17 @@<span class="idiff left right"> if (APPLE)</span></span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- mmseqs2.orig/CMakeLists.txt<span class="idiff left right"> 2019-07-19 23:04:12.110285812 +0100</span></span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ mmseqs2/CMakeLists.txt<span class="idiff left right"> 2019-07-19 23:04:12.106285779 +0100</span></span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -59,17 +59,17 @@</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"> endif ()</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff"> # zstd</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -34,9 +38,9 @@ Index: mmseqs2/CMakeLists.txt</td>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="diff"> OPTION(TE_NAT_LOG "Define the log function as natural logarithm." ON)</span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="diff"><span class="gh" style="color: #999;">Index: mmseqs2/cmake/MMseqsSetupDerivedTarget.cmake</span></span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- mmseqs2.orig/cmake/MMseqsSetupDerivedTarget.cmake</span></span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ mmseqs2/cmake/MMseqsSetupDerivedTarget.cmake</span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -6,7 +6,7 @@<span class="idiff left right"> function (mmseqs_setup_derived_target TA</span></span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- mmseqs2.orig/cmake/MMseqsSetupDerivedTarget.cmake<span class="idiff left right"> 2019-07-19 23:04:12.110285812 +0100</span></span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ mmseqs2/cmake/MMseqsSetupDerivedTarget.cmake<span class="idiff left right"> 2019-07-19 23:04:12.106285779 +0100</span></span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="diff"><span class="gu" style="color: #800080; font-weight: 600;">@@ -6,7 +6,7 @@</span></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="diff"> get_target_property(DEF_TMP mmseqs-framework COMPILE_DEFINITIONS)</span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="diff"> get_target_property(INCL_TMP mmseqs-framework INCLUDE_DIRECTORIES)</span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="diff"> </span>
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