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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/aevol">Debian Med / aevol</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/aevol/commit/8d45f7ca04cb07c97ee4425fe2824be46328a1ba">8d45f7ca</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-07-24T23:51:14Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Get most test issues fixed - leaving the last failure as a riddle for Saira
</pre>
</li>
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<h4>1 changed file:</h4>
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<li class="file-stats">
<a href="#b8880ead45e8d099a1552defb95ea70479f1572e">
debian/tests/run-unit-tests
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</li>
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<h4>Changes:</h4>
<li id="b8880ead45e8d099a1552defb95ea70479f1572e">
<a href="https://salsa.debian.org/med-team/aevol/commit/8d45f7ca04cb07c97ee4425fe2824be46328a1ba#b8880ead45e8d099a1552defb95ea70479f1572e"><strong>debian/tests/run-unit-tests</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19,9 +19,6 @@ gunzip -r *</td>
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19
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Just for debugging</span></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="shell"><span class="nb" style="color: #0086b3;">set</span> <span class="nt" style="color: #000080;">-x</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Set the X Server</span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Xvfb :100 -ac &</span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Run simulation</span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd </span>workflow/wild_type</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="shell">aevol_create</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -33,7 +30,7 @@ outdirsB="line06 line07 line08 line09 line10"</td>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="shell"><span class="nv" style="color: #008080;">outdirsC</span><span class="o" style="font-weight: 600;">=</span><span class="s2" style="color: #d14;">"line11 line12 line13 line14 line15"</span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="shell"><span class="k" style="font-weight: 600;">for </span>mydir <span class="k" style="font-weight: 600;">in</span> <span class="nv" style="color: #008080;">$outdirsA</span> <span class="nv" style="color: #008080;">$outdirsB</span> <span class="nv" style="color: #008080;">$outdirsC</span></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="shell"><span class="k" style="font-weight: 600;">do</span></span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span>aevol_propagate <span class="nt" style="color: #000080;">-o</span> ../<span class="nv" style="color: #008080;">$mydir</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="idiff left">xvfb-run </span><span class="nt" style="color: #000080;"><span class="idiff">--auto-servernum</span></span><span class="idiff"> </span><span class="nt" style="color: #000080;"><span class="idiff">--server-args</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="s2" style="color: #d14;"><span class="idiff">"-screen 0 1024x768x24"</span></span><span class="idiff right"> </span>aevol_propagate <span class="nt" style="color: #000080;">-o</span> ../<span class="nv" style="color: #008080;">$mydir</span></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="shell"><span class="k" style="font-weight: 600;">done</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> ..</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -73,21 +70,21 @@ ENV_VARIATION none" > newparam-groupC.in</td>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="shell"><span class="k" style="font-weight: 600;">for </span>mydir <span class="k" style="font-weight: 600;">in</span> <span class="nv" style="color: #008080;">$outdirsA</span></span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="shell"><span class="k" style="font-weight: 600;">do</span></span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">cd</span> <span class="nv" style="color: #008080;">$mydir</span></span>
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="shell"> aevol_modify <span class="nt" style="color: #000080;">-f</span> ../newparam-groupA.in</span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="shell"> <span class="idiff left">xvfb-run </span><span class="nt" style="color: #000080;"><span class="idiff">--auto-servernum</span></span><span class="idiff"> </span><span class="nt" style="color: #000080;"><span class="idiff">--server-args</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="s2" style="color: #d14;"><span class="idiff">"-screen 0 1024x768x24"</span></span><span class="idiff right"> </span>aevol_modify <span class="nt" style="color: #000080;">-f</span> ../newparam-groupA.in</span>
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77
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74
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">cd</span> ..</span>
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78
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75
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="shell"><span class="k" style="font-weight: 600;">done</span></span>
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79
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<td class="diff-line-num new_line" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
76
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="shell"></span>
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80
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77
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="shell"><span class="k" style="font-weight: 600;">for </span>mydir <span class="k" style="font-weight: 600;">in</span> <span class="nv" style="color: #008080;">$outdirsB</span></span>
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81
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78
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="shell"><span class="k" style="font-weight: 600;">do</span></span>
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82
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79
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">cd</span> <span class="nv" style="color: #008080;">$mydir</span></span>
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83
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="shell"> aevol_modify <span class="nt" style="color: #000080;">-f</span> ../newparam-groupB.in</span>
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<td class="diff-line-num new new_line" data-linenumber="80" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="shell"> <span class="idiff left">xvfb-run </span><span class="nt" style="color: #000080;"><span class="idiff">--auto-servernum</span></span><span class="idiff"> </span><span class="nt" style="color: #000080;"><span class="idiff">--server-args</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="s2" style="color: #d14;"><span class="idiff">"-screen 0 1024x768x24"</span></span><span class="idiff right"> </span>aevol_modify <span class="nt" style="color: #000080;">-f</span> ../newparam-groupB.in</span>
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84
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81
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">cd</span> ..</span>
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85
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82
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="shell"><span class="k" style="font-weight: 600;">done</span></span>
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86
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83
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="shell"></span>
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87
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84
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="shell"><span class="k" style="font-weight: 600;">for </span>mydir <span class="k" style="font-weight: 600;">in</span> <span class="nv" style="color: #008080;">$outdirsC</span></span>
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88
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85
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="shell"><span class="k" style="font-weight: 600;">do</span></span>
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89
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86
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">cd</span> <span class="nv" style="color: #008080;">$mydir</span></span>
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90
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<td class="diff-line-num new_line old" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="shell"> aevol_modify <span class="nt" style="color: #000080;">-f</span> ../newparam-groupC.in</span>
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<td class="diff-line-num new new_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
87
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC87" class="line" lang="shell"> <span class="idiff left">xvfb-run </span><span class="nt" style="color: #000080;"><span class="idiff">--auto-servernum</span></span><span class="idiff"> </span><span class="nt" style="color: #000080;"><span class="idiff">--server-args</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="s2" style="color: #d14;"><span class="idiff">"-screen 0 1024x768x24"</span></span><span class="idiff right"> </span>aevol_modify <span class="nt" style="color: #000080;">-f</span> ../newparam-groupC.in</span>
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91
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88
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">cd</span> ..</span>
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92
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89
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="shell"><span class="k" style="font-weight: 600;">done</span></span>
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93
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90
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="shell"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -96,7 +93,7 @@ done</td>
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96
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93
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="shell"><span class="k" style="font-weight: 600;">for </span>mydir <span class="k" style="font-weight: 600;">in</span> <span class="nv" style="color: #008080;">$outdirsA</span> <span class="nv" style="color: #008080;">$outdirsB</span> <span class="nv" style="color: #008080;">$outdirsC</span></span>
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97
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94
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="shell"><span class="k" style="font-weight: 600;">do</span></span>
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98
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95
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<pre style="margin: 0;"> <span id="LC95" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">cd</span> <span class="nv" style="color: #008080;">$mydir</span></span>
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99
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="shell"> aevol_run <span class="nt" style="color: #000080;">-e</span> 200 <span class="nt" style="color: #000080;">-p</span> <span class="nt" style="color: #000080;">-1</span></span>
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<td class="diff-line-num new new_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="shell"> <span class="idiff left">xvfb-run </span><span class="nt" style="color: #000080;"><span class="idiff">--auto-servernum</span></span><span class="idiff"> </span><span class="nt" style="color: #000080;"><span class="idiff">--server-args</span></span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="s2" style="color: #d14;"><span class="idiff">"-screen 0 1024x768x24"</span></span><span class="idiff right"> </span>aevol_run <span class="nt" style="color: #000080;">-e</span> 200 <span class="nt" style="color: #000080;">-p</span> <span class="nt" style="color: #000080;">-1</span></span>
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100
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97
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">cd</span> ..</span>
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<td class="diff-line-num old_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
101
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98
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="shell"><span class="k" style="font-weight: 600;">done</span></span>
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102
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99
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="shell"></span>
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