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<h3>
Steffen Möller pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/adapterremoval">Debian Med / adapterremoval</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/adapterremoval/commit/c071ae9752470fdb713daf73cf0e369f7e8537e0">c071ae97</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-07-27T10:18:49Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.3.1</pre>
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<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
.gitignore
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<li class="file-stats">
<a href="#43b6fe73a99e26d838cc62790847dc00d3d069db">
AdapterRemoval.1
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<li class="file-stats">
<a href="#7facec255884dc55d3818e4dfbea89b1bdd7f49e">
CHANGES.md
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<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
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<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
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<a href="#254a2da7a740675e537439eb88e32083b9ea4771">
docs/conf.py
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<a href="#97ff07ad4c1a5714d99451d89c86fe6ac8df21f9">
docs/manpage.rst
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<a href="#c2859654ab37e80041e657c2555bf19ca3c6dcf0">
src/alignment.cpp
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<li class="file-stats">
<a href="#a6dba4cedcdcb211600cb44ee8a5c6e4e1786083">
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src/alignment_tables.cpp
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<a href="#72ec2ca52011f855459360ca25e0d178d26e2341">
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+
src/alignment_tables.hpp
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<a href="#41a1adf0253071f6c3b2579021d2f4b29d6a89fd">
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src/barcode_table.cpp
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<a href="#1ba1eebfd075fcccfebc6b943286eb8c30862507">
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src/barcode_table.hpp
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<a href="#dbe14eb43704fad21474aaa485a225809608e93a">
src/demultiplex.cpp
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<a href="#68765db13d1e00e979949306e11d124bf0761ce2">
src/demultiplex.hpp
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<a href="#d0e28f34badf53c02f1ef5c57c75e58dd9400856">
src/fastq.cpp
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<a href="#1acd857c3049761d072f94a0999854fb8ee558bc">
src/fastq.hpp
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<a href="#307c7f310e928870fd934789491a5982527165a6">
src/fastq_io.cpp
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<li class="file-stats">
<a href="#15031f4cf9fbcabb3cab1c60e55f1b49f2b18cdb">
src/fastq_io.hpp
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<li class="file-stats">
<a href="#46811d32c7030655627c9c93a5a28a621e3ea1ff">
src/linereader.cpp
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<a href="#a815e875b36e3d39931ecf171111b331c3bf8437">
src/main.hpp
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<a href="#7377e237ea6195b83b02da6c853d9306fb81ff81">
src/main_adapter_id.cpp
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<li class="file-stats">
<a href="#2bc533f20df9d7d3884b4a3b0d5bf06f8aaeb88e">
src/main_adapter_rm.cpp
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<li class="file-stats">
<a href="#dddd18686d787f17c6750e276aa002769379a941">
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src/managed_writer.cpp
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<a href="#1352c604a1ac91b84b73779e5d5f3149231bc42e">
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src/managed_writer.hpp
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<a href="#ef88a520cd2c67cd5a316913a594d34065944f83">
src/trimmed_reads.cpp
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<li class="file-stats">
<a href="#cacb29d0afc262413c77857d9da6df5c15ccf8dd">
src/userconfig.cpp
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<a href="#28c1b8a8599525aef0165c3eb2597a52195851f3">
src/userconfig.hpp
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<li class="file-stats">
<a href="#9e05c6cdc7ccff997774791c9d24663d993328e7">
tests/regression/misc/bad_args/demux_without_barcodes/info.json
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<li class="file-stats">
<a href="#51461021888ad2f45a30f54bab270cf30e9049b1">
tests/regression/misc/bad_args/fewer_file1/info.json
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<li class="file-stats">
<a href="#9421291585b4a797cd3bd90abeac7675c7d63d8a">
tests/regression/misc/bad_args/fewer_file2/info.json
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<h5>The diff was not included because it is too large.</h5>
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