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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/bowtie2">Debian Med / bowtie2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/commit/086f22aed49a3f377ae0efb2685baafd6dea5d43">086f22ae</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-07-27T00:22:43Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.3.5.1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/commit/f5e71f801418ef26c3b242d78939866ce71d45be">f5e71f80</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-07-27T00:22:54Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.3.5.1'

Update to upstream version '2.3.5.1'
with Debian dir 95aa48ef10b806d07f68f3001bdc6a4723cdc145</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/commit/4b68feee8dcdbf161bbc9c9f02edbe1c9f9fcb7d">4b68feee</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-07-27T00:22:54Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/commit/d2e987a2a870c91d8c4b8252f61a9d8551c221c4">d2e987a2</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-07-27T00:22:54Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper-compat 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/commit/9c98418817ad792c433c64cc3958be025ea6a435">9c984188</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-07-27T00:22:59Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.4.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/bowtie2/commit/2321febd4e3b249d2bb401e654914b8380b703aa">2321febd</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-07-27T01:19:09Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update to new upstream version - yet FTBFS

It is a memory error, may possibly be accredited to the virtual machine
running the build. Someone please check.
</pre>
</li>
</ul>
<h4>27 changed files:</h4>
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<li class="file-stats">
<a href="#7445606fbf8f3683cd42bdc54b05d7a0bc2dfc44">
<span class="new-file">
+
.gitmodules
</span>
</a>
</li>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#11b6bd8effd101bc84fd65cb117f69f8a96c6d1a">
<span class="new-file">
+
Dockerfile-aarch64
</span>
</a>
</li>
<li class="file-stats">
<a href="#f11fb3bba37e7060bedcd5895812b7c511c52651">
MANUAL
</a>
</li>
<li class="file-stats">
<a href="#465370da702349b6dcb3f9f2026872cad6877efa">
MANUAL.markdown
</a>
</li>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#9f621eb5fd3bcb2fa5c7bd228c9b1ad42edc46c8">
NEWS
</a>
</li>
<li class="file-stats">
<a href="#69e27356ef629022720d868ab0c0e3394775b6c1">
<span class="deleted-file">

README
</span>
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</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
<span class="new-file">
+
README.md
</span>
</a>
</li>
<li class="file-stats">
<a href="#b33892fbddeffc3368077b4904ad0b3d562a7312">
VERSION
</a>
</li>
<li class="file-stats">
<a href="#e61d74ca26201e13b6daf686712a607420c3dcbe">
aligner_result.h
</a>
</li>
<li class="file-stats">
<a href="#4f7922d4941180de63733976feb35274e01082da">
aligner_sw.h
</a>
</li>
<li class="file-stats">
<a href="#20032103dc113eacde067d1154cc770339598f43">
bowtie2
</a>
</li>
<li class="file-stats">
<a href="#464ce98392db4e108605b7a12696e7c3434eaf56">
bowtie2-build
</a>
</li>
<li class="file-stats">
<a href="#622d3bcfba0df0e4ae8a0849416ed2d2cf987528">
bowtie2-inspect
</a>
</li>
<li class="file-stats">
<a href="#64f1aac6be9dd64453121ce3592c43407e567ded">
bt2_io.cpp
</a>
</li>
<li class="file-stats">
<a href="#6026283a643bf7fb08c2ef0b797486df93cf0698">
bt2_search.cpp
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">

debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#4d4a394ff4174f20019a8af4d8b6185efe92c21f">
debian/patches/hardening.patch
</a>
</li>
<li class="file-stats">
<a href="#f6d5cce121ce6d959b0f2b0bd2185c9a61dd13ba">
<span class="deleted-file">

debian/patches/indentation.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#76258ff6f1526200cf3fda90e9f37fd9ee4b4364">
debian/patches/reproducible.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#6815d1260ed0fdc6f0d97bc028700b124f2bf358">
debian/patches/skip_test_requiring_non-free_libmath-random-perl.patch
</a>
</li>
<li class="file-stats">
<a href="#9f15b0fe50d277c8d231ce47c6a42a8355f51ff0">
diff_sample.h
</a>
</li>
<li class="file-stats">
<a href="#ccc364c6c660e798a4f3c3b78119cbea257aee1e">
doc/manual.html
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>

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<a href="https://salsa.debian.org/med-team/bowtie2/compare/db9c5c10155e706c35dc98b739e1e96aff736549...2321febd4e3b249d2bb401e654914b8380b703aa">View it on GitLab</a>.
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