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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/hyphy">Debian Med / hyphy</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/commit/d3dc5272ecf5d314d887f48f750fdffc261c7f7c">d3dc5272</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2018-09-26T14:52:57Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.3.14+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/commit/85b32e4cac0c48576101198142d1d7afb8bfff05">85b32e4c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-07-27T23:08:02Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.5.0+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/commit/6cb339aec0f5a75b6ef88bf730d6d9118f7ce50b">6cb339ae</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-07-27T23:08:14Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.5.0+dfsg'
Update to upstream version '2.5.0+dfsg'
with Debian dir 535af16df32ea6dbf8cfe887b59925fbf0a4a9b0</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/commit/9f9325f3390dac2394eb810e45391fb9e2c609d4">9f9325f3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-07-27T23:08:15Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/commit/8c0aa39527a5dcc9569160309ff81cbcf5378404">8c0aa395</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-07-27T23:08:15Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper-compat 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/commit/ecee047e81f2a78c1ceb354e828337434d1688c6">ecee047e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-07-27T23:08:28Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.4.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/commit/a3423f3824dcaa874b040d8c6dd30851d0d2fde3">a3423f38</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-07-28T03:02:48Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapt patches
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/commit/7ae1bb07b76edd49af8dd261c091271984a6e818">7ae1bb07</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-07-28T03:03:36Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Secure URI in copyright format
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/commit/5e67064f6a9bee4e096ac1536775165070482064">5e67064f</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-07-28T03:03:37Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove trailing whitespace in debian/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/hyphy/commit/d6fd8ecae63fc27b60e34f80c73680b33d7fe010">d6fd8eca</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-07-28T03:09:46Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Does not build
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#9a2aa4db38d3115ed60da621e012c0efc0172aae">
CMakeLists.txt
</a>
</li>
<li class="file-stats">
<a href="#3f454a98e586d1aa0d322e19afd5e67e08f2d3c8">
CONTRIBUTING.md
</a>
</li>
<li class="file-stats">
<a href="#db5759be099c455f1d9756300721cc76b95df181">
Examples/SimpleAnalyses/data/hiv.nuc
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#868cd25af52461999b7e509a199a542da7a30569">
<span class="deleted-file">
−
conf/travis-install-mpi.sh
</span>
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
</a>
</li>
<li class="file-stats">
<a href="#aa75673e5b6a9322e7a7fece23b2386c1bd7c1c9">
debian/patches/drop_profiling_option.patch
</a>
</li>
<li class="file-stats">
<a href="#5d8b4c855654e17e3995ece86540076df6afc070">
debian/patches/msse_option_only_if_available.patch
</a>
</li>
<li class="file-stats">
<a href="#13a41dc4500a3b814275f268c2f33007dfaeca1c">
<span class="deleted-file">
−
debian/patches/remove_arch_specific_flags.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#7323d37be0dba87001dd7e44732cf1a40aafb1ed">
debian/patches/remove_unneeded_test.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#45ae034d1d71b2d961abb7c91cf3d2f1a02a59c6">
<span class="deleted-file">
−
debian/patches/spelling.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#d185b62d54557160e7ddc743405a9cec66dcaa96">
debian/patches/use_debian_sqlite.patch
</a>
</li>
<li class="file-stats">
<a href="#a4b99f8baf2c7c42b34c50baa28355fad0c88031">
<span class="deleted-file">
−
help/Commands/query.bf
</span>
</a>
</li>
<li class="file-stats">
<a href="#a9ce4a42614e5658d81dbd188f6b344fb115d7a4">
<span class="deleted-file">
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help/Commands/reference.sql
</span>
</a>
</li>
<li class="file-stats">
<a href="#a88a9d9ff538ef0ade0918cfb18428edece8af9e">
<span class="deleted-file">
−
help/Getting Started With HyPhy.pdf
</span>
</a>
</li>
<li class="file-stats">
<a href="#9e9b15209dc3132ed3bd011c0a9cc8aaa9947ca9">
<span class="deleted-file">
−
help/SelectionAnalyses.pdf
</span>
</a>
</li>
<li class="file-stats">
<a href="#9dc5137a83de1403e9ff70b317bc72cf00837d80">
<span class="deleted-file">
−
res/ChartAddIns/Approximate_CDF
</span>
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</li>
<li class="file-stats">
<a href="#58f5c675b3ee5f6ee0caaaf0b5d958ec3550f1ba">
<span class="deleted-file">
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res/ChartAddIns/Column Operations
</span>
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<li class="file-stats">
<a href="#14521be3141c885aeaec8dfd30759c3a491794b4">
<span class="deleted-file">
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res/ChartAddIns/Complex Select Cells By Value
</span>
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<li class="file-stats">
<a href="#4c699c08ba1f3a6cffd830fbae637f112b2b1066">
<span class="deleted-file">
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res/ChartAddIns/Contigency Table
</span>
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</li>
<li class="file-stats">
<a href="#0a1bdf275d2d7177fc6d89ebc8ffc2d7ee86d7eb">
<span class="deleted-file">
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res/ChartAddIns/Covariance
</span>
</a>
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<li class="file-stats">
<a href="#481296d5a14ae8357b4da18431bed278e8b1c679">
<span class="deleted-file">
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res/ChartAddIns/DBAddIns/DescriptiveStats.bf
</span>
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<li class="file-stats">
<a href="#cfc5f96af3d3dbffd3185d7eb5f27cd1d74334bd">
<span class="deleted-file">
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res/ChartAddIns/DBAddIns/FromSQLFlatFile.bf
</span>
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<li class="file-stats">
<a href="#04e573e14df9db02c5649b3f047b153920086767">
<span class="deleted-file">
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res/ChartAddIns/DBAddIns/HY_DBW_TemplateList
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<li class="file-stats">
<a href="#247946ce0f14d94de37f03c94df2e48350f1f6fa">
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res/ChartAddIns/DBAddIns/ToChartWindow.bf
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</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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