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<h3>
Aaron M. Ucko pushed to branch master
at <a href="https://salsa.debian.org/med-team/ncbi-tools6">Debian Med / ncbi-tools6</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-tools6/commit/eef0ddc929ddd22a67ce926376c525614c742176">eef0ddc9</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2019-07-29T01:01:39Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove data/UniVec.* over DFSG-nonfree Invitrogen vectors.
Per UniVec.nhr, Invitrogen Corporation holds copyright over some
portions of UniVec and requires a license for commercial use thereof.
Other files (even UniVec_Core.*) have no such restrictions.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-tools6/commit/7a4f865207054e34084ffa84cab289c7b3a089e3">7a4f8652</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2019-07-30T02:10:33Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Merge tag 'upstream/6.1.20170106+dfsg1'.
Belatedly repackage without data/UniVec.*, some portions of which
turned out to be non-free (with copyright held by Invitrogen
Corporation, which requires a license for commercial use thereof.)
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-tools6/commit/2db6abd558ed337734ba32d2b1d6ad888838d3e1">2db6abd5</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2019-07-30T02:10:39Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Note Andreas's d/u/metadata DOI syntax fix in changelog.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-tools6/commit/4349eba1fea515fcffc6cff0f52c47c427c06911">4349eba1</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2019-07-30T02:10:51Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">d/copyright: Cover previously overlooked third-party code (all DFSG-free).
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-tools6/commit/1077452c07b84a823b09ae0c9d21b45b29f28084">1077452c</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2019-07-30T02:11:12Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/copyright: Update authors and dates for debian/*.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-tools6/commit/4af64252c156f12c0b1bcc6b511a9fb20c6e7ca2">4af64252</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2019-07-30T02:11:15Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Temporarily revert ncbi-cn3d splitout to expedite the above fixes.
This reverts commit e1fc91b7bac38a1fb3ff6e5e141589beb09d5691
("Split Cn3D(-3.0) out into a new ncbi-cn3d binary package.")
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-tools6/commit/6729ff2ec9e9c84fb5ac9623145d7bf086c067b5">6729ff2e</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2019-07-30T02:11:15Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debian/{copyright,watch}: Formally update to reflect repackaging.
* debian/copyright: Set Files-Excluded.
* debian/watch: Reflect usage of +dfsg1.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-tools6/commit/bd6ad3ab1951cf1f40ef8f4493ee9e5fc36b4c4a">bd6ad3ab</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2019-07-30T02:11:15Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Omit +dfsg1 suffix from library SONAMEs.
* debian/rules: Introduce NCBI_VERSION_SHLIB, with +dfsg1 stripped off.
* make/makeshlb.unx: NCBI_VERSION -> NCBI_VERSION_SHLIB.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ncbi-tools6/commit/1977de0be3b269d1a2996d7c8b2d7f527616c826">1977de0b</a></strong>
<div>
<span>by Aaron M. Ucko</span>
<i>at 2019-07-30T02:12:42Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Finalize ncbi-tools6 6.1.20170106+dfsg1-1 for upload to unstable.
</pre>
</li>
</ul>
<h4>17 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#dbb034a5614518543e2f89257dd042b87b1688c8">
<span class="deleted-file">
−
data/UniVec.nhr
</span>
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<li class="file-stats">
<a href="#82d4eccb921b9a8919a980c1723e9c63627dbdda">
<span class="deleted-file">
−
data/UniVec.nin
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<li class="file-stats">
<a href="#edd2ae55bcd4276c4cbf91bbada2252c1f61afa2">
<span class="deleted-file">
−
data/UniVec.nsq
</span>
</a>
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<li class="file-stats">
<a href="#b92c9d7f6a1fe2f439cb4bef6011394658166981">
debian/.gitignore
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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debian/control
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<a href="#adb7f75f79e3bb85eb62912a2904c5d24af878fb">
debian/copyright
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<li class="file-stats">
<a href="#0f8a44dcc54a88985e0ea0a5cefba86bd849c017">
<span class="deleted-file">
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debian/ncbi-cn3d.install
</span>
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<a href="#befeee7e7b5e758b2a5269ffbcd0d963b12ada36">
debian/ncbi-tools-x11.install
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<a href="#740455f4a83899d65055747857e50db75270d872">
debian/ncbi-cn3d.mime
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debian/ncbi-tools-x11.mime
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<a href="#ea77efc4f5568db07ca4ffd9087c935f2e8566b0">
debian/ncbi-cn3d.postinst
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debian/ncbi-tools-x11.postinst
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<a href="#eacca8c651b946a1834a548703ef07eae1362a30">
debian/ncbi-cn3d.prerm
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debian/ncbi-tools-x11.prerm
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<a href="#df84ab942da3c19ccd0c325e6867ace0e2b86f99">
debian/patches/debian-changes
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<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
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<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
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<li class="file-stats">
<a href="#7d07b030c127df39824abcc3d4ec38cffaa4bef2">
make/makeshlb.unx
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</ul>
<h4>Changes:</h4>
<li id="dbb034a5614518543e2f89257dd042b87b1688c8">
<a href="https://salsa.debian.org/med-team/ncbi-tools6/compare/b5e93c7baad2c2695f069cd86bfaf1545f1d954c...1977de0be3b269d1a2996d7c8b2d7f527616c826#dbb034a5614518543e2f89257dd042b87b1688c8"><strong>data/UniVec.nhr</strong>
deleted
</a>
<hr>
No preview for this file type
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</li>
<li id="82d4eccb921b9a8919a980c1723e9c63627dbdda">
<a href="https://salsa.debian.org/med-team/ncbi-tools6/compare/b5e93c7baad2c2695f069cd86bfaf1545f1d954c...1977de0be3b269d1a2996d7c8b2d7f527616c826#82d4eccb921b9a8919a980c1723e9c63627dbdda"><strong>data/UniVec.nin</strong>
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</a>
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<li id="edd2ae55bcd4276c4cbf91bbada2252c1f61afa2">
<a href="https://salsa.debian.org/med-team/ncbi-tools6/compare/b5e93c7baad2c2695f069cd86bfaf1545f1d954c...1977de0be3b269d1a2996d7c8b2d7f527616c826#edd2ae55bcd4276c4cbf91bbada2252c1f61afa2"><strong>data/UniVec.nsq</strong>
deleted
</a>
<hr>
No preview for this file type
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</li>
<li id="b92c9d7f6a1fe2f439cb4bef6011394658166981">
<a href="https://salsa.debian.org/med-team/ncbi-tools6/compare/b5e93c7baad2c2695f069cd86bfaf1545f1d954c...1977de0be3b269d1a2996d7c8b2d7f527616c826#b92c9d7f6a1fe2f439cb4bef6011394658166981"><strong>debian/.gitignore</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7,7 +7,6 @@ libncbi6</td>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">libvibrant6b</span>
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">lib*-dbg</span>
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<td class="diff-line-num old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">lib*-dev</span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">ncbi-cn3d</span>
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<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">ncbi-data</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">ncbi-rrna-data</span>
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<td class="diff-line-num old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">ncbi-tools-bin</span>
</pre>
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<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/ncbi-tools6/compare/b5e93c7baad2c2695f069cd86bfaf1545f1d954c...1977de0be3b269d1a2996d7c8b2d7f527616c826#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="mosel"><span class="n" style="color: #333;">ncbi</span><span class="p">-</span><span class="n" style="color: #333;">tools6</span> <span class="p">(</span><span class="m" style="color: #099;">6.1.20170106</span><span class="p">+</span><span class="n" style="color: #333;">dfsg1</span><span class="p">-</span><span class="m" style="color: #099;">1</span><span class="p">)</span> <span class="n" style="color: #333;">unstable</span><span class="p">;</span> <span class="n" style="color: #333;">urgency</span><span class="p">=</span><span class="n" style="color: #333;">medium</span></span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="mosel"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="mosel"> <span class="p">[</span><span class="n" style="color: #333;">Andreas</span> <span class="n" style="color: #333;">Tille</span><span class="p">]</span></span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="mosel"> <span class="p">*</span> <span class="n" style="color: #333;">debian</span><span class="p">/</span><span class="n" style="color: #333;">upstream</span><span class="p">/</span><span class="n" style="color: #333;">metadata</span><span class="p">:</span> <span class="n" style="color: #333;">Fix</span> <span class="n" style="color: #333;">DOI</span> <span class="n" style="color: #333;">syntax</span> <span class="p">(</span><span class="n" style="color: #333;">shouldn</span><span class="s1" style="color: #d14;">'t be a full URL).</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="mosel"><span class="s1" style="color: #d14;"> [Aaron M. Ucko]</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="mosel"><span class="s1" style="color: #d14;"> * Belatedly repackage without data/UniVec.*, some portions of which</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="mosel"><span class="s1" style="color: #d14;"> turned out to be non-free (with copyright held by Invitrogen</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="mosel"><span class="s1" style="color: #d14;"> Corporation, which requires a license for commercial use thereof.)</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="mosel"><span class="s1" style="color: #d14;"> * debian/copyright:</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="mosel"><span class="s1" style="color: #d14;"> - Cover previously overlooked third-party code (all DFSG-free).</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="mosel"><span class="s1" style="color: #d14;"> - Update authors and dates for debian/*.</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="mosel"><span class="s1" style="color: #d14;"> - Set Files-Excluded to reflect repackaging.</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="mosel"><span class="s1" style="color: #d14;"> * debian/rules: Introduce NCBI_VERSION_SHLIB, with +dfsg1 stripped off.</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="mosel"><span class="s1" style="color: #d14;"> * debian/watch: Reflect usage of +dfsg1.</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="mosel"><span class="s1" style="color: #d14;"> * make/makeshlb.unx: NCBI_VERSION -> NCBI_VERSION_SHLIB.</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="mosel"><span class="s1" style="color: #d14;"> * Temporarily revert ncbi-cn3d splitout to expedite the above fixes.</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="mosel"></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="mosel"><span class="s1" style="color: #d14;"> -- Aaron M. Ucko <ucko@debian.org> Mon, 29 Jul 2019 22:12:41 -0400</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="mosel"><span class="s1" style="color: #d14;">ncbi-tools6 (6.1.20170106-7) unstable; urgency=medium</span></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="mosel"></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="mosel"><span class="s1" style="color: #d14;"> [ Steffen Möller ]</span></span>
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<a href="https://salsa.debian.org/med-team/ncbi-tools6/compare/b5e93c7baad2c2695f069cd86bfaf1545f1d954c...1977de0be3b269d1a2996d7c8b2d7f527616c826#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -82,7 +82,6 @@ Depends: libncbi6 (<< ${source:Upstream-Version}.1),</td>
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> ${shlibs:Depends}</span>
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="plaintext">Suggests: libvibrant6b,</span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> ncbi-blast+,</span>
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="plaintext"> ncbi-cn3d,</span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="plaintext"> ncbi-tools-x11</span>
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="plaintext">Breaks: blast2 (<< 1:2.2.26.20160908)</span>
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="plaintext">Replaces: blast2 (<< 1:2.2.26.20160908)</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -102,33 +101,14 @@ Depends: libncbi6 (<< ${source:Upstream-Version}.1),</td>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"> libncbi6 (>= ${source:Upstream-Version}),</span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> libvibrant6b (<< ${source:Upstream-Version}.1),</span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> libvibrant6b (>= ${source:Upstream-Version}),</span>
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="plaintext"> ncbi-cn3d,</span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="plaintext"> ${shlibs:Depends}</span>
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext">Suggests: ncbi-tools-bin</span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="plaintext">Description: NCBI libraries for biology applications (X-based utilities)</span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="plaintext"> This package includes some X-based utilities distributed with the</span>
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="plaintext"> NCBI C SDK: Network Entrez, Sequin, ddv, and udv. These programs</span>
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<td class="diff-line-num old old_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="plaintext"> are not part of ncbi-tools-bin because they depend on several</span>
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="plaintext"> additional library packages.</span>
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC115" class="line" lang="plaintext">Package: ncbi-cn3d</span>
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="plaintext">Multi-Arch: foreign</span>
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;">-<span id="LC119" class="line" lang="plaintext">Depends: libncbi6 (<< ${source:Upstream-Version}.1),</span>
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<pre style="margin: 0;">-<span id="LC120" class="line" lang="plaintext"> libncbi6 (>= ${source:Upstream-Version}),</span>
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<pre style="margin: 0;">-<span id="LC121" class="line" lang="plaintext"> libvibrant6b (<< ${source:Upstream-Version}.1),</span>
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<pre style="margin: 0;">-<span id="LC122" class="line" lang="plaintext"> libvibrant6b (>= ${source:Upstream-Version}),</span>
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<pre style="margin: 0;">-<span id="LC123" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;">-<span id="LC124" class="line" lang="plaintext"> ${shlibs:Depends}</span>
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<pre style="margin: 0;">-<span id="LC125" class="line" lang="plaintext">Suggests: ncbi-tools-bin,</span>
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126
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<pre style="margin: 0;">-<span id="LC126" class="line" lang="plaintext"> ncbi-tools-x11</span>
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127
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<pre style="margin: 0;">-<span id="LC127" class="line" lang="plaintext">Breaks: ncbi-tools-x11 (<< 6.1.20170106-7~)</span>
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128
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<pre style="margin: 0;">-<span id="LC128" class="line" lang="plaintext">Replaces: ncbi-tools-x11 (<< 6.1.20170106-7~)</span>
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129
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<pre style="margin: 0;">-<span id="LC129" class="line" lang="plaintext">Description: 3-dimensional viewer for biological molecules</span>
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130
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<pre style="margin: 0;">-<span id="LC130" class="line" lang="plaintext"> Cn3D is a helper application for your web browser that allows you to</span>
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<td class="diff-line-num old old_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
131
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<pre style="margin: 0;">-<span id="LC131" class="line" lang="plaintext"> view 3-dimensional structures from NCBI's Entrez retrieval service.</span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="plaintext"> NCBI C SDK: Cn3D, Network Entrez, Sequin, ddv, and udv. These</span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="plaintext"> programs are not part of ncbi-tools-bin because they depend on</span>
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="plaintext"> several additional library packages.</span>
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132
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112
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"></span>
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133
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113
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="plaintext">Package: libvibrant6b</span>
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134
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="plaintext">Architecture: any</span>
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<a href="https://salsa.debian.org/med-team/ncbi-tools6/compare/b5e93c7baad2c2695f069cd86bfaf1545f1d954c...1977de0be3b269d1a2996d7c8b2d7f527616c826#adb7f75f79e3bb85eb62912a2904c5d24af878fb"><strong>debian/copyright</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,15 +2,63 @@ Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Upstream-Contact: toolbox@ncbi.nlm.nih.gov</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Upstream-Name: ncbi</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Source: http://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Files-Excluded: ncbi/data/UniVec.*</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Files: *</span>
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7
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Copyright: 1996-2017 NCBI</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">License: public_domain</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">Files: algo/blast/core/boost_erf.c</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">Copyright: 2006 John Maddock</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">License: BSL-1.0</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">Files: connect/mitsock/*</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">Copyright: 1998-1999 The Massachusetts Institute of Technology</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">License: MIT</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">Files: connect/mitsock/OTErrno.c connect/mitsock/OTnetdb.c</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> connect/mitsock/sock_ext.h</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">Copyright: ???? National Center for Supercomputing Applications</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">License: NCSA</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext">Files: connect/mitsock/a_inet.h:</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">Copyright: 1983 Regents of the University of California</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">License: BSD-3-Clause</span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"></span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext">Files: connect/mitsock/carbon_netdb.h:</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext">Copyright: 1980, 1983, 1988 Regents of the University of California</span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext">License: BSD-3-Clause</span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext">Files: connect/mitsock/neterrno.h:</span>
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33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext">Copyright: 1982, 1986, 1989 Regents of the University of California</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext">License: BSD-3-Clause</span>
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35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"></span>
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36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext">Files: connect/mitsock/neti_in.h:</span>
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37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext">Copyright: 1982, 1986, 1990 Regents of the University of California</span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext">License: BSD-3-Clause</span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext">Files: connect/mitsock/s_types.h:</span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext">Copyright: 1982 Regents of the University of California</span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext">License: BSD-3-Clause</span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext">Files: connect/parson.?</span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext">Copyright: 2012-2016 Krzysztof Gabis</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext">License: Expat</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"></span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext">Files: corelib/regex.c</span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext">Copyright: 1993 Free Software Foundation, Inc.</span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext">License: GPL-2+</span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext">Files: corelib/regex.h</span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext">Copyright: 1985, 1989, 1990, 1991, 1992, 1993 Free Software Foundation, Inc.</span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext">License: GPL-2+</span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"></span>
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10
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext">Files: debian/*</span>
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11
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="plaintext">Copyright: 1998-1999 Stephane Bortzmeyer <bortzmeyer@pasteur.fr></span>
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12
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> 2001 Dr. Guenter Bechly <gbechly@debian.org></span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> 2001-2018 Aaron M. Ucko <ucko@debian.org></span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> 2001-2019 Aaron M. Ucko <ucko@debian.org></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> 2012-2019 Andreas Tille <tille@debian.org</span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> 2019 Steffen Möller <moeller@debian.org></span>
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14
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="plaintext">License: public_domain</span>
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15
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="plaintext"></span>
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16
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="plaintext">Files: debian/tests/test-data/* (except for trnascan-se_sample.output)</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -62,3 +110,122 @@ License: public_domain</td>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="plaintext"> purpose.</span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="plaintext"> Please cite the author in any work or product based on this material.</span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="plaintext"></span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="plaintext">License: BSL-1.0</span>
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<td class="diff-line-num new new_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="plaintext"> Permission is hereby granted, free of charge, to any person or organization</span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="plaintext"> obtaining a copy of the software and accompanying documentation covered by</span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="plaintext"> this license (the "Software") to use, reproduce, display, distribute,</span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="plaintext"> execute, and transmit the Software, and to prepare derivative works of the</span>
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="plaintext"> Software, and to permit third-parties to whom the Software is furnished to</span>
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="plaintext"> do so, all subject to the following:</span>
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="plaintext"> The copyright notices in the Software and this entire statement, including</span>
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123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="plaintext"> the above license grant, this restriction and the following disclaimer,</span>
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="plaintext"> must be included in all copies of the Software, in whole or in part, and</span>
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125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="plaintext"> all derivative works of the Software, unless such copies or derivative</span>
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="plaintext"> works are solely in the form of machine-executable object code generated by</span>
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="plaintext"> a source language processor.</span>
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128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="plaintext"> .</span>
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="plaintext"> THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR</span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="plaintext"> IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,</span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="plaintext"> FITNESS FOR A PARTICULAR PURPOSE, TITLE AND NON-INFRINGEMENT. IN NO EVENT</span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext"> SHALL THE COPYRIGHT HOLDERS OR ANYONE DISTRIBUTING THE SOFTWARE BE LIABLE</span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="plaintext"> FOR ANY DAMAGES OR OTHER LIABILITY, WHETHER IN CONTRACT, TORT OR OTHERWISE,</span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="plaintext"> ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER</span>
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<td class="diff-line-num new new_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="plaintext"> DEALINGS IN THE SOFTWARE.</span>
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<td class="diff-line-num new new_line" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="plaintext">License: Expat</span>
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<td class="diff-line-num new new_line" data-linenumber="138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="plaintext"> Permission is hereby granted, free of charge, to any person obtaining a copy</span>
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<td class="diff-line-num new new_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="plaintext"> of this software and associated documentation files (the "Software"), to</span>
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<td class="diff-line-num new new_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="plaintext"> deal in the Software without restriction, including without limitation the</span>
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<td class="diff-line-num new new_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="plaintext"> rights to use, copy, modify, merge, publish, distribute, sublicense, and/or</span>
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<td class="diff-line-num new new_line" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="plaintext"> sell copies of the Software, and to permit persons to whom the Software is</span>
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<td class="diff-line-num new new_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="plaintext"> furnished to do so, subject to the following conditions:</span>
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<td class="diff-line-num new new_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="plaintext"> .</span>
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<td class="diff-line-num new new_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="plaintext"> The above copyright notice and this permission notice shall be included in</span>
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<td class="diff-line-num new new_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="plaintext"> all copies or substantial portions of the Software.</span>
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<td class="diff-line-num new new_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="plaintext"> .</span>
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<td class="diff-line-num new new_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="plaintext"> THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR</span>
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<td class="diff-line-num new new_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="plaintext"> IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,</span>
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<td class="diff-line-num new new_line" data-linenumber="150" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="plaintext"> FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE</span>
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<td class="diff-line-num new new_line" data-linenumber="151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="plaintext"> AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER</span>
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<td class="diff-line-num new old_line" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="152" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="plaintext"> LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING</span>
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<td class="diff-line-num new old_line" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="plaintext"> FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS</span>
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<td class="diff-line-num new old_line" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="plaintext"> IN THE SOFTWARE.</span>
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<td class="diff-line-num new new_line" data-linenumber="155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="plaintext"></span>
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<td class="diff-line-num new old_line" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="plaintext">License: MIT</span>
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<td class="diff-line-num new old_line" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="plaintext"> Permission to use, copy, modify, and distribute this software and its</span>
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<td class="diff-line-num new old_line" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="plaintext"> documentation for any purpose and without fee is hereby granted,</span>
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<td class="diff-line-num new old_line" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="plaintext"> provided that the above copyright notice appear in all copies and that</span>
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<td class="diff-line-num new old_line" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="plaintext"> both that copyright notice and this permission notice appear in</span>
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161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="plaintext"> supporting documentation, and that the name of M.I.T. not be used in</span>
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162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="plaintext"> advertising or publicity pertaining to distribution of the software</span>
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163
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="plaintext"> without specific, written prior permission. Furthermore if you modify</span>
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164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="plaintext"> this software you must label your software as modified software and not</span>
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<td class="diff-line-num new new_line" data-linenumber="165" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="plaintext"> distribute it in such a fashion that it might be confused with the</span>
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<td class="diff-line-num new new_line" data-linenumber="166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
166
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="plaintext"> original MIT software. M.I.T. makes no representations about the</span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="plaintext"> suitability of this software for any purpose. It is provided "as is"</span>
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<td class="diff-line-num new new_line" data-linenumber="168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="plaintext"> without express or implied warranty.</span>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="plaintext"> . </span>
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170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="plaintext"> THIS SOFTWARE IS PROVIDED ``AS IS'' AND WITHOUT ANY EXPRESS OR IMPLIED</span>
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171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="plaintext"> WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED WARRANTIES OF</span>
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<td class="diff-line-num new new_line" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
172
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="plaintext"> MERCHANTIBILITY AND FITNESS FOR A PARTICULAR PURPOSE.</span>
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173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="plaintext"> .</span>
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<td class="diff-line-num new new_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="plaintext"> Individual source code files are copyright MIT, Cygnus Support,</span>
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<td class="diff-line-num new new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="plaintext"> OpenVision, Oracle, Sun Soft, FundsXpress, and others.</span>
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<td class="diff-line-num new new_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="plaintext"> .</span>
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<td class="diff-line-num new new_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="plaintext"> Project Athena, Athena, Athena MUSE, Discuss, Hesiod, Kerberos, Moira,</span>
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<td class="diff-line-num new new_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="plaintext"> and Zephyr are trademarks of the Massachusetts Institute of Technology</span>
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<td class="diff-line-num new new_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="plaintext"> (MIT). No commercial use of these trademarks may be made without prior</span>
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<td class="diff-line-num new new_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="plaintext"> written permission of MIT.</span>
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<td class="diff-line-num new new_line" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="plaintext"> .</span>
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<td class="diff-line-num new new_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="plaintext"> "Commercial use" means use of a name in a product or other for-profit</span>
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<td class="diff-line-num new new_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
183
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="plaintext"> manner. It does NOT prevent a commercial firm from referring to the MIT</span>
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<td class="diff-line-num new new_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="plaintext"> trademarks in order to convey information (although in doing so,</span>
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<td class="diff-line-num new new_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="plaintext"> recognition of their trademark status should be given).</span>
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<td class="diff-line-num new new_line" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
186
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<pre style="margin: 0;">+<span id="LC186" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
187
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<pre style="margin: 0;">+<span id="LC187" class="line" lang="plaintext">License: NCSA</span>
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188
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="plaintext"> This source file is placed in the public domian.</span>
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<td class="diff-line-num new new_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
189
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="plaintext"> Any resemblance to NCSA Telnet, living or dead, is purely coincidental.</span>
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<td class="diff-line-num new new_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
190
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="plaintext"> .</span>
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<td class="diff-line-num new new_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="plaintext"> National Center for Supercomputing Applications</span>
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<td class="diff-line-num new new_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
192
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="plaintext"> 152 Computing Applications Building</span>
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<td class="diff-line-num new new_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
193
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="plaintext"> 605 E. Springfield Ave.</span>
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<td class="diff-line-num new new_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
194
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="plaintext"> Champaign, IL 61820</span>
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195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="plaintext"></span>
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196
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="plaintext">License: BSD-3-Clause</span>
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197
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="plaintext"> Redistribution and use in source and binary forms are permitted</span>
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198
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="plaintext"> provided that: (1) source distributions retain this entire copyright</span>
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199
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="plaintext"> notice and comment, and (2) distributions including binaries display</span>
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200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="plaintext"> the following acknowledgement: ``This product includes software</span>
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<td class="diff-line-num new new_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
201
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="plaintext"> developed by the University of California, Berkeley and its contributors''</span>
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<td class="diff-line-num new new_line" data-linenumber="202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
202
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="plaintext"> in the documentation or other materials provided with the distribution</span>
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<td class="diff-line-num new new_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
203
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="plaintext"> and in all advertising materials mentioning features or use of this</span>
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<td class="diff-line-num new new_line" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
204
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="plaintext"> software. Neither the name of the University nor the names of its</span>
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<td class="diff-line-num new new_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
205
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<pre style="margin: 0;">+<span id="LC205" class="line" lang="plaintext"> contributors may be used to endorse or promote products derived</span>
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<td class="diff-line-num new new_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
206
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="plaintext"> from this software without specific prior written permission.</span>
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<td class="diff-line-num new new_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
207
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="plaintext"> THIS SOFTWARE IS PROVIDED ``AS IS'' AND WITHOUT ANY EXPRESS OR</span>
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<td class="diff-line-num new new_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
208
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="plaintext"> IMPLIED WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED</span>
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<td class="diff-line-num new new_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
209
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="plaintext"> WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE.</span>
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<td class="diff-line-num new new_line" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
210
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
211
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="plaintext">License: GPL-2+</span>
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<td class="diff-line-num new new_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
212
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="plaintext"> This program is free software; you can redistribute it</span>
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213
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="plaintext"> and/or modify it under the terms of the GNU General Public</span>
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214
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="plaintext"> License as published by the Free Software Foundation; either</span>
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215
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<pre style="margin: 0;">+<span id="LC215" class="line" lang="plaintext"> version 2 of the License, or (at your option) any later</span>
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216
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<pre style="margin: 0;">+<span id="LC216" class="line" lang="plaintext"> version.</span>
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217
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="plaintext"> .</span>
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218
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="plaintext"> This program is distributed in the hope that it will be</span>
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219
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="plaintext"> useful, but WITHOUT ANY WARRANTY; without even the implied</span>
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220
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="plaintext"> warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR</span>
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221
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="plaintext"> PURPOSE. See the GNU General Public License for more</span>
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222
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="plaintext"> details.</span>
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223
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="plaintext"> .</span>
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224
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="plaintext"> You should have received a copy of the GNU General Public</span>
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225
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="plaintext"> License along with this package; if not, write to the Free</span>
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226
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="plaintext"> Software Foundation, Inc., 51 Franklin St, Fifth Floor,</span>
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227
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="plaintext"> Boston, MA 02110-1301 USA</span>
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228
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="plaintext"> .</span>
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229
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="plaintext"> On Debian systems, the full text of the GNU General Public</span>
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230
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="plaintext"> License version 2 can be found in the file</span>
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231
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="plaintext"> `/usr/share/common-licenses/GPL-2'.</span></pre>
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<li id="0f8a44dcc54a88985e0ea0a5cefba86bd849c017">
<a href="https://salsa.debian.org/med-team/ncbi-tools6/compare/b5e93c7baad2c2695f069cd86bfaf1545f1d954c...1977de0be3b269d1a2996d7c8b2d7f527616c826#0f8a44dcc54a88985e0ea0a5cefba86bd849c017"><strong>debian/ncbi-cn3d.install</strong>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="php"><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span><span class="o" style="font-weight: 600;">/</span><span class="nx">Cn3D</span><span class="o" style="font-weight: 600;">-</span><span class="mf" style="color: #099;">3.0</span></span></pre>
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<a href="https://salsa.debian.org/med-team/ncbi-tools6/compare/b5e93c7baad2c2695f069cd86bfaf1545f1d954c...1977de0be3b269d1a2996d7c8b2d7f527616c826#befeee7e7b5e758b2a5269ffbcd0d963b12ada36"><strong>debian/ncbi-tools-x11.install</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="php"><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span><span class="o" style="font-weight: 600;">/</span><span class="nx">Cn3D</span><span class="o" style="font-weight: 600;">-</span><span class="mf" style="color: #099;">3.0</span></span>
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1
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="php"><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span><span class="o" style="font-weight: 600;">/</span><span class="nx">Psequin</span></span>
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2
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="php"><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span><span class="o" style="font-weight: 600;">/</span><span class="nx">ddv</span></span>
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3
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="php"><span class="nx">usr</span><span class="o" style="font-weight: 600;">/</span><span class="nx">bin</span><span class="o" style="font-weight: 600;">/</span><span class="nx">entrez2</span></span>
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<a href="https://salsa.debian.org/med-team/ncbi-tools6/compare/b5e93c7baad2c2695f069cd86bfaf1545f1d954c...1977de0be3b269d1a2996d7c8b2d7f527616c826#740455f4a83899d65055747857e50db75270d872"><strong>debian/ncbi-cn3d.mime</strong>
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<a href="https://salsa.debian.org/med-team/ncbi-tools6/compare/b5e93c7baad2c2695f069cd86bfaf1545f1d954c...1977de0be3b269d1a2996d7c8b2d7f527616c826#ea77efc4f5568db07ca4ffd9087c935f2e8566b0"><strong>debian/ncbi-cn3d.postinst</strong>
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<a href="https://salsa.debian.org/med-team/ncbi-tools6/compare/b5e93c7baad2c2695f069cd86bfaf1545f1d954c...1977de0be3b269d1a2996d7c8b2d7f527616c826#df84ab942da3c19ccd0c325e6867ace0e2b86f99"><strong>debian/patches/debian-changes</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="diff"><span class="p">Combined patches from git.</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- /dev/null</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/.gitignore</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/.gitignore</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="diff"><span class="p">@@ -0,0 +1,6 @@</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+bin</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+build</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8,8 +8,8 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+lib</span></span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+shlib</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+*-stamp</span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/access/ent2api.c</span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/access/ent2api.c</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/access/ent2api.c</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/access/ent2api.c</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff"><span class="p">@@ -1273,7 +1273,7 @@</span> NLM_EXTERN CONN EntrezOpenConnection (</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="diff"> *arg = '\0';</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19,8 +19,8 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="diff"> }</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="diff"> #ifdef OS_MAC</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/api/sqnutil3.c</span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/api/sqnutil3.c</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/api/sqnutil3.c</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/api/sqnutil3.c</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="diff"><span class="p">@@ -33198,7 +33198,7 @@</span> ClickableItemPtr LIBCALL ClickableGlobal</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="diff"> cip->clickable_item_type = item_type;</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="diff"> cip->description </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -30,8 +30,8 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="diff"> return cip;</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="diff"> }</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="diff"> return NULL;</span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/connect/ncbi_gnutls.c</span></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/connect/ncbi_gnutls.c</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/connect/ncbi_gnutls.c</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/connect/ncbi_gnutls.c</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="diff"><span class="p">@@ -585,6 +585,7 @@</span> static EIO_Status s_GnuTlsInit(FSSLPull</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="diff"> assert(!s_GnuTlsCredAnon);</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -48,8 +48,8 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="diff"> val = ConnNetInfo_GetValue(0, "GNUTLS_LOGLEVEL", buf, sizeof(buf), 0);</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="diff"> CORE_LOCK_READ;</span>
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/connect/ncbi_http_connector.c</span></span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/connect/ncbi_http_connector.c</span></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/connect/ncbi_http_connector.c</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/connect/ncbi_http_connector.c</span></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="diff"><span class="p">@@ -240,8 +240,14 @@</span> static int/*bool*/ x_UnsafeRedirectOK(SH</span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="diff"> if (uuu->unsafe_redir == eDefault) {</span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="diff"> if (!(uuu->flags & fHTTP_UnsafeRedirects)) {</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -66,8 +66,8 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="diff"> uuu->unsafe_redir = ConnNetInfo_Boolean(val) ? eOn : eOff;</span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="diff"> } else</span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="diff"> uuu->unsafe_redir = eOn;</span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/connect/ncbi_util.c</span></span>
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/connect/ncbi_util.c</span></span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/connect/ncbi_util.c</span></span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/connect/ncbi_util.c</span></span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="diff"><span class="p">@@ -49,7 +49,9 @@</span></span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="diff"> # ifndef NCBI_OS_SOLARIS</span>
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="diff"> # include <limits.h></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="79" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -79,8 +79,8 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="diff"> # include <sys/user.h></span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="diff"> # endif /*NCBI_OS_LINUX*/</span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="diff"> # include <pwd.h></span>
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/connect/urlquery.c</span></span>
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/connect/urlquery.c</span></span>
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/connect/urlquery.c</span></span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/connect/urlquery.c</span></span>
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="diff"><span class="p">@@ -128,7 +128,10 @@</span> NLM_EXTERN CONN QUERY_OpenUrlQuery (</span>
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="diff"> }</span>
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86
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="diff"> if ( host_port ) {</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -92,8 +92,8 @@ Combined patches from git.</td>
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92
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="diff"> StringNCpy_0 (net_info->path, host_path, sizeof (net_info->path));</span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="diff"> if (StringDoesHaveText (arguments)) {</span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="diff"> StringNCpy_0 (net_info->args, arguments, sizeof (net_info->args));</span>
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/corelib/ncbimain.c</span></span>
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96
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<pre style="margin: 0;">-<span id="LC96" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/corelib/ncbimain.c</span></span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/corelib/ncbimain.c</span></span>
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/corelib/ncbimain.c</span></span>
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97
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="diff"><span class="p">@@ -67,6 +67,7 @@</span></span>
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98
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="diff"> #pragma segment NlmSegA</span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="diff"> #endif</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="116" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="116" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -116,8 +116,8 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="diff"> NlmThreadJoinAll();</span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC119" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/corelib/ncbitime.c</span></span>
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<pre style="margin: 0;">-<span id="LC120" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/corelib/ncbitime.c</span></span>
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119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/corelib/ncbitime.c</span></span>
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/corelib/ncbitime.c</span></span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="diff"><span class="p">@@ -77,6 +77,7 @@</span></span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="diff"> #include <ncbi.h></span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="diff"> #include <ncbithr.h></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -161,8 +161,8 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="diff"> if ((dt = localtime (<ime)) != NULL)</span>
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="diff"> {</span>
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="diff"> Nlm_MemCopy ((Nlm_VoidPtr) dtp, (Nlm_VoidPtr) dt, sizeof (struct tm));</span>
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<pre style="margin: 0;">-<span id="LC164" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/demo/asndisc.c</span></span>
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165
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/demo/asndisc.c</span></span>
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164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/demo/asndisc.c</span></span>
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165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/demo/asndisc.c</span></span>
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="diff"><span class="p">@@ -65,6 +65,7 @@</span></span>
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="diff"> #include <objmacro.h></span>
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="diff"> #include <macroapi.h></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -180,8 +180,8 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="diff"> if (! AllObjLoad ()) {</span>
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="diff"> Message (MSG_FATAL, "AllObjLoad failed");</span>
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="diff"> return 1;</span>
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<pre style="margin: 0;">-<span id="LC183" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/demo/entrez2.c</span></span>
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<pre style="margin: 0;">-<span id="LC184" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/demo/entrez2.c</span></span>
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183
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/demo/entrez2.c</span></span>
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/demo/entrez2.c</span></span>
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="diff"><span class="p">@@ -61,6 +61,8 @@</span></span>
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="diff"> #include <entrez2.h></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -209,8 +209,8 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="diff"> } else if (useTestServ) {</span>
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<pre style="margin: 0;"> <span id="LC210" class="line" lang="diff"> EntrezSetService ("Entrez2Test");</span>
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="diff"> } else if (useURL) {</span>
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<pre style="margin: 0;">-<span id="LC212" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/demo/findspl.c</span></span>
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<pre style="margin: 0;">-<span id="LC213" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/demo/findspl.c</span></span>
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/demo/findspl.c</span></span>
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/demo/findspl.c</span></span>
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="diff"><span class="p">@@ -62,6 +62,8 @@</span></span>
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="diff"> #include <accentr.h></span>
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<pre style="margin: 0;"> <span id="LC216" class="line" lang="diff"> #include <sequtil.h></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="229" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="229" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -229,8 +229,8 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="diff"> if ( !GetArgs("findspl", NUMARGS, myargs) ) return 1;</span>
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC231" class="line" lang="diff"> gi = myargs[0].intvalue;</span>
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<pre style="margin: 0;">-<span id="LC232" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/demo/gbseqget.c</span></span>
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<pre style="margin: 0;">-<span id="LC233" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/demo/gbseqget.c</span></span>
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<pre style="margin: 0;">+<span id="LC232" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/demo/gbseqget.c</span></span>
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<pre style="margin: 0;">+<span id="LC233" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/demo/gbseqget.c</span></span>
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="diff"><span class="p">@@ -54,6 +54,8 @@</span></span>
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<pre style="margin: 0;"> <span id="LC235" class="line" lang="diff"> #include <pmfapi.h></span>
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<pre style="margin: 0;"> <span id="LC236" class="line" lang="diff"> #include <asn2gnbp.h></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="249" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -249,8 +249,8 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC249" class="line" lang="diff"> if (! AllObjLoad ()) {</span>
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="diff"> Message (MSG_FATAL, "AllObjLoad failed");</span>
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="diff"> return 1;</span>
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<pre style="margin: 0;">-<span id="LC252" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/demo/insdseqget.c</span></span>
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<pre style="margin: 0;">-<span id="LC253" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/demo/insdseqget.c</span></span>
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<pre style="margin: 0;">+<span id="LC252" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/demo/insdseqget.c</span></span>
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<pre style="margin: 0;">+<span id="LC253" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/demo/insdseqget.c</span></span>
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254
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<pre style="margin: 0;"> <span id="LC254" class="line" lang="diff"><span class="p">@@ -55,6 +55,8 @@</span></span>
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255
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255
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<pre style="margin: 0;"> <span id="LC255" class="line" lang="diff"> #include <pmfapi.h></span>
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<td class="diff-line-num old_line" data-linenumber="256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
256
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256
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<pre style="margin: 0;"> <span id="LC256" class="line" lang="diff"> #include <asn2gnbp.h></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -269,8 +269,8 @@ Combined patches from git.</td>
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269
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269
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="diff"> if (! AllObjLoad ()) {</span>
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<td class="diff-line-num old_line" data-linenumber="270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
270
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270
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<pre style="margin: 0;"> <span id="LC270" class="line" lang="diff"> Message (MSG_FATAL, "AllObjLoad failed");</span>
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<td class="diff-line-num old_line" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
271
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271
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="diff"> return 1;</span>
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272
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<pre style="margin: 0;">-<span id="LC272" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/demo/nps2gps.c</span></span>
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<td class="diff-line-num old old_line" data-linenumber="273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
273
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<pre style="margin: 0;">-<span id="LC273" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/demo/nps2gps.c</span></span>
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<td class="diff-line-num new old_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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272
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/demo/nps2gps.c</span></span>
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<td class="diff-line-num new old_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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273
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/demo/nps2gps.c</span></span>
</pre>
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274
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274
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<pre style="margin: 0;"> <span id="LC274" class="line" lang="diff"><span class="p">@@ -50,6 +50,8 @@</span></span>
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275
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275
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<pre style="margin: 0;"> <span id="LC275" class="line" lang="diff"> #include <toasn3.h></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
276
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276
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<pre style="margin: 0;"> <span id="LC276" class="line" lang="diff"> #include <pmfapi.h></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -289,8 +289,8 @@ Combined patches from git.</td>
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<td class="diff-line-num old_line" data-linenumber="289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
289
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289
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<pre style="margin: 0;"> <span id="LC289" class="line" lang="diff"> if (! AllObjLoad ()) {</span>
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<td class="diff-line-num old_line" data-linenumber="290" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
290
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290
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<pre style="margin: 0;"> <span id="LC290" class="line" lang="diff"> Message (MSG_FATAL, "AllObjLoad failed");</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="291" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
291
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291
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<pre style="margin: 0;"> <span id="LC291" class="line" lang="diff"> return 1;</span>
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<td class="diff-line-num old old_line" data-linenumber="292" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
292
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<pre style="margin: 0;">-<span id="LC292" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/demo/taxblast_main.c</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="293" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
293
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<pre style="margin: 0;">-<span id="LC293" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/demo/taxblast_main.c</span></span>
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<td class="diff-line-num new old_line" data-linenumber="294" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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292
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<pre style="margin: 0;">+<span id="LC292" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/demo/taxblast_main.c</span></span>
</pre>
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293
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<pre style="margin: 0;">+<span id="LC293" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/demo/taxblast_main.c</span></span>
</pre>
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294
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<td class="diff-line-num new_line" data-linenumber="294" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
294
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<pre style="margin: 0;"> <span id="LC294" class="line" lang="diff"><span class="p">@@ -41,6 +41,8 @@</span> static char const rcsid[] = "$Id: taxbla</span>
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295
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295
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<pre style="margin: 0;"> <span id="LC295" class="line" lang="diff"> #include <objgen.h></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="296" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
296
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<pre style="margin: 0;"> <span id="LC296" class="line" lang="diff"> #include <taxblast.h></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="309" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -309,8 +309,8 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC309" class="line" lang="diff"> if (!GetArgs("txblast", NUMARG, myargs)) {</span>
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<pre style="margin: 0;"> <span id="LC310" class="line" lang="diff"> return 1;</span>
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<pre style="margin: 0;"> <span id="LC311" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">-<span id="LC312" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/demo/tbl2asn.c</span></span>
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<pre style="margin: 0;">-<span id="LC313" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/demo/tbl2asn.c</span></span>
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<pre style="margin: 0;">+<span id="LC312" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/demo/tbl2asn.c</span></span>
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313
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<pre style="margin: 0;">+<span id="LC313" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/demo/tbl2asn.c</span></span>
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<pre style="margin: 0;"> <span id="LC314" class="line" lang="diff"><span class="p">@@ -8911,10 +8911,12 @@</span> Int2 Main (void)</span>
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<pre style="margin: 0;"> <span id="LC315" class="line" lang="diff"> return 1;</span>
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<pre style="margin: 0;"> <span id="LC316" class="line" lang="diff"> }</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="334" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -334,8 +334,8 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC334" class="line" lang="diff"> return 1;</span>
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<pre style="margin: 0;"> <span id="LC335" class="line" lang="diff"> }</span>
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<pre style="margin: 0;"> <span id="LC336" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC337" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/desktop/bspview.c</span></span>
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<pre style="margin: 0;">-<span id="LC338" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/desktop/bspview.c</span></span>
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<pre style="margin: 0;">+<span id="LC337" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/desktop/bspview.c</span></span>
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<pre style="margin: 0;">+<span id="LC338" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/desktop/bspview.c</span></span>
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<pre style="margin: 0;"> <span id="LC339" class="line" lang="diff"><span class="p">@@ -2549,13 +2549,13 @@</span> NLM_EXTERN void Nlm_LaunchWebPage (Char</span>
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<pre style="margin: 0;"> <span id="LC340" class="line" lang="diff"> }</span>
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<pre style="margin: 0;"> <span id="LC341" class="line" lang="diff"> #endif</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -353,8 +353,8 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC353" class="line" lang="diff"> exit(-1);</span>
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<pre style="margin: 0;"> <span id="LC354" class="line" lang="diff"> }</span>
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<pre style="margin: 0;">-<span id="LC356" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/doc/dispatcher.html</span></span>
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<pre style="margin: 0;">-<span id="LC357" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/doc/dispatcher.html</span></span>
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<pre style="margin: 0;">+<span id="LC356" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/doc/dispatcher.html</span></span>
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<pre style="margin: 0;">+<span id="LC357" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/doc/dispatcher.html</span></span>
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<pre style="margin: 0;"> <span id="LC358" class="line" lang="diff"><span class="p">@@ -9,15 +9,15 @@</span></span>
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<pre style="margin: 0;"> <span id="LC359" class="line" lang="diff"> --></span>
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<pre style="margin: 0;"> <span id="LC360" class="line" lang="diff"> <META NAME="keywords" CONTENT="dispatcher toolkit"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -392,8 +392,8 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC392" class="line" lang="diff"> <!-- right content column --> </span>
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<pre style="margin: 0;"> <span id="LC393" class="line" lang="diff"> <td width="460"> </span>
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<pre style="margin: 0;"> <span id="LC394" class="line" lang="diff"> <p> </p></span>
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<pre style="margin: 0;">-<span id="LC395" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/doc/firewall.html</span></span>
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<pre style="margin: 0;">-<span id="LC396" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/doc/firewall.html</span></span>
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<pre style="margin: 0;">+<span id="LC395" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/doc/firewall.html</span></span>
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<pre style="margin: 0;">+<span id="LC396" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/doc/firewall.html</span></span>
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<pre style="margin: 0;"> <span id="LC397" class="line" lang="diff"><span class="p">@@ -9,15 +9,15 @@</span></span>
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<pre style="margin: 0;"> <span id="LC398" class="line" lang="diff"> <META NAME="keywords" CONTENT="insert your keywords for the search engine"></span>
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<pre style="margin: 0;"> <span id="LC399" class="line" lang="diff"> <META NAME="description" CONTENT="insert the description to be displayed by the search engine. Also searched by the search engine."></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -455,8 +455,8 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC455" class="line" lang="diff"> the preset ports, and it is kept in-sync with currently</span>
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<pre style="margin: 0;"> <span id="LC456" class="line" lang="diff"> configured open ports (so remember to refresh your download</span>
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<pre style="margin: 0;"> <span id="LC457" class="line" lang="diff"> prior to actual use).</span>
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<pre style="margin: 0;">-<span id="LC458" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/doc/fwd_check.sh</span></span>
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<pre style="margin: 0;">-<span id="LC459" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/doc/fwd_check.sh</span></span>
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<pre style="margin: 0;">+<span id="LC458" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/doc/fwd_check.sh</span></span>
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<pre style="margin: 0;">+<span id="LC459" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/doc/fwd_check.sh</span></span>
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<pre style="margin: 0;"> <span id="LC460" class="line" lang="diff"><span class="p">@@ -8,7 +8,7 @@</span></span>
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461
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<pre style="margin: 0;"> <span id="LC461" class="line" lang="diff"> delay_sec="$1"</span>
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462
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<pre style="margin: 0;"> <span id="LC462" class="line" lang="diff"> delay_sec=${delay_sec:="10"}</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -466,8 +466,8 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC466" class="line" lang="diff"> helper="./fwd_failure_helper.exe"</span>
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467
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<pre style="margin: 0;"> <span id="LC467" class="line" lang="diff"> test -z "$netcat" && netcat="`whereis nc | sed 's/^[^:]*://;s/ //g'`"</span>
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468
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<pre style="margin: 0;"> <span id="LC468" class="line" lang="diff"> test -z "$HTTP_NCBI_EXTERNAL" && HTTP_CAF_EXTERNAL="$HTTP_NCBI_EXTERNAL"</span>
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<pre style="margin: 0;">-<span id="LC469" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/doc/man/cleanasn.1</span></span>
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<pre style="margin: 0;">-<span id="LC470" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/doc/man/cleanasn.1</span></span>
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<pre style="margin: 0;">+<span id="LC469" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/doc/man/cleanasn.1</span></span>
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<pre style="margin: 0;">+<span id="LC470" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/doc/man/cleanasn.1</span></span>
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<pre style="margin: 0;"> <span id="LC471" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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<pre style="margin: 0;"> <span id="LC472" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-.TH CLEANASN 1 2016-09-01 NCBI "NCBI Tools User's Manual"</span></span>
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<pre style="margin: 0;"> <span id="LC473" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+.TH CLEANASN 1 2017-01-09 NCBI "NCBI Tools User's Manual"</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -495,7 +495,7 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC495" class="line" lang="diff"> Virtual gaps inside segmented sequence</span>
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496
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<pre style="margin: 0;"> <span id="LC496" class="line" lang="diff"> .IP s</span>
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<pre style="margin: 0;"> <span id="LC497" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- /dev/null</span></span>
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<pre style="margin: 0;">-<span id="LC498" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/doc/man/taxblast.1</span></span>
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<pre style="margin: 0;">+<span id="LC498" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/doc/man/taxblast.1</span></span>
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<pre style="margin: 0;"> <span id="LC499" class="line" lang="diff"><span class="p">@@ -0,0 +1,31 @@</span></span>
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<pre style="margin: 0;"> <span id="LC500" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+.TH TAXBLAST 1 2016-12-05 NCBI "NCBI Tools User's Manual"</span></span>
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<pre style="margin: 0;"> <span id="LC501" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+.SH NAME</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -528,8 +528,8 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC528" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+Sequence is DNA</span></span>
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<pre style="margin: 0;"> <span id="LC529" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+.SH AUTHOR</span></span>
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<pre style="margin: 0;"> <span id="LC530" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+The National Center for Biotechnology Information.</span></span>
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<pre style="margin: 0;">-<span id="LC531" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/make/makeall.unx</span></span>
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<pre style="margin: 0;">-<span id="LC532" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/make/makeall.unx</span></span>
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<pre style="margin: 0;">+<span id="LC531" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/make/makeall.unx</span></span>
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<pre style="margin: 0;">+<span id="LC532" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/make/makeall.unx</span></span>
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<pre style="margin: 0;"> <span id="LC533" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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<pre style="margin: 0;"> <span id="LC534" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-# makefile for asntool and ncbi core routines,</span></span>
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<pre style="margin: 0;"> <span id="LC535" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# -*- makefile -*- for asntool and ncbi core routines,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -597,8 +597,8 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC597" class="line" lang="diff"> cp -fp ../algo/blast/composition_adjustment/*.h \</span>
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598
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<pre style="margin: 0;"> <span id="LC598" class="line" lang="diff"> ../include/algo/blast/composition_adjustment</span>
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599
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<pre style="margin: 0;"> <span id="LC599" class="line" lang="diff"> - mkdir -p ../include/algo/blast/api</span>
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<pre style="margin: 0;">-<span id="LC600" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/make/makedemo.unx</span></span>
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<pre style="margin: 0;">-<span id="LC601" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/make/makedemo.unx</span></span>
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<pre style="margin: 0;">+<span id="LC600" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/make/makedemo.unx</span></span>
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<pre style="margin: 0;">+<span id="LC601" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/make/makedemo.unx</span></span>
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<pre style="margin: 0;"> <span id="LC602" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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<pre style="margin: 0;"> <span id="LC603" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-# makefile for demo programs</span></span>
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<pre style="margin: 0;"> <span id="LC604" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# -*- makefile -*- for demo programs</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -615,8 +615,8 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC615" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC616" class="line" lang="diff"> # errhdr</span>
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<pre style="margin: 0;"> <span id="LC617" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC618" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/make/makenet.unx</span></span>
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<pre style="margin: 0;">-<span id="LC619" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/make/makenet.unx</span></span>
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<pre style="margin: 0;">+<span id="LC618" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/make/makenet.unx</span></span>
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<pre style="margin: 0;">+<span id="LC619" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/make/makenet.unx</span></span>
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<pre style="margin: 0;"> <span id="LC620" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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<pre style="margin: 0;"> <span id="LC621" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-# makefile for network demo programs and network entrez</span></span>
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<pre style="margin: 0;"> <span id="LC622" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# -*- makefile -*- for network demo programs and network entrez</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -723,8 +723,8 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC723" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC724" class="line" lang="diff"> # test client for the suggest network service</span>
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<pre style="margin: 0;"> <span id="LC725" class="line" lang="diff"> suggcli: suggcli.c $(BNETCLILIB) $(BLIB24)</span>
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<pre style="margin: 0;">-<span id="LC726" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/make/makeshlb.unx</span></span>
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<pre style="margin: 0;">-<span id="LC727" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/make/makeshlb.unx</span></span>
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<pre style="margin: 0;">+<span id="LC726" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/make/makeshlb.unx</span></span>
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<pre style="margin: 0;">+<span id="LC727" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/make/makeshlb.unx</span></span>
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<pre style="margin: 0;"> <span id="LC728" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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<pre style="margin: 0;"> <span id="LC729" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#</span></span>
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<pre style="margin: 0;"> <span id="LC730" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# -*- makefile -*-</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -744,7 +744,7 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC744" class="line" lang="diff"> $(SH1) $@ $(SH2)</span>
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<pre style="margin: 0;"> <span id="LC745" class="line" lang="diff"> rm -f *.o __*</span>
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<pre style="margin: 0;"> <span id="LC746" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<pre style="margin: 0;">-<span id="LC747" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+so=so.$(NCBI_VERSION_<span class="idiff left right">MAJOR).$(NCBI_VERSION_MINOR</span>)</span></span>
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<pre style="margin: 0;">+<span id="LC747" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+so=so.$(NCBI_VERSION_<span class="idiff left right">SHLIB</span>)</span></span>
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748
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748
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<pre style="margin: 0;"> <span id="LC748" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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749
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<pre style="margin: 0;"> <span id="LC749" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+%.$(so): %.a</span></span>
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750
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750
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<pre style="margin: 0;"> <span id="LC750" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ $(CC) -shared -Wl,-soname=$*.so.$(NCBI_VERSION_MAJOR) -o $@ \</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="848" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -848,8 +848,8 @@ Combined patches from git.</td>
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848
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<pre style="margin: 0;"> <span id="LC848" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+libvibnet.$(so): $(libvibnet_deps)</span></span>
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849
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849
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<pre style="margin: 0;"> <span id="LC849" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# libvibrant.$(so): $(libvibrant_deps)</span></span>
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850
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850
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<pre style="margin: 0;"> <span id="LC850" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+libvibrantOGL.$(so): $(libvibrantOGL_deps)</span></span>
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851
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<pre style="margin: 0;">-<span id="LC851" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/tools/readdb.c</span></span>
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852
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<pre style="margin: 0;">-<span id="LC852" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/tools/readdb.c</span></span>
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<pre style="margin: 0;">+<span id="LC851" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/tools/readdb.c</span></span>
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<pre style="margin: 0;">+<span id="LC852" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/tools/readdb.c</span></span>
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<pre style="margin: 0;"> <span id="LC853" class="line" lang="diff"><span class="p">@@ -10167,7 +10167,10 @@</span> static Int2 FDBFinish (FormatDBPtr</span>
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854
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854
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<pre style="margin: 0;"> <span id="LC854" class="line" lang="diff"> return 1;</span>
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855
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<pre style="margin: 0;"> <span id="LC855" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -862,8 +862,8 @@ Combined patches from git.</td>
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862
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<pre style="margin: 0;"> <span id="LC862" class="line" lang="diff"> </span>
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863
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<pre style="margin: 0;"> <span id="LC863" class="line" lang="diff"> /* write db_title and date-time stamp eigth bytes aligned */</span>
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864
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864
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<pre style="margin: 0;"> <span id="LC864" class="line" lang="diff"> tmp = title_len + StringLen(dateTime);</span>
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865
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<pre style="margin: 0;">-<span id="LC865" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/vibrant/netscape.c</span></span>
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866
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<pre style="margin: 0;">-<span id="LC866" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/vibrant/netscape.c</span></span>
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865
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<pre style="margin: 0;">+<span id="LC865" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/vibrant/netscape.c</span></span>
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866
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<pre style="margin: 0;">+<span id="LC866" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/vibrant/netscape.c</span></span>
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867
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867
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<pre style="margin: 0;"> <span id="LC867" class="line" lang="diff"><span class="p">@@ -548,9 +548,8 @@</span> static Boolean NS_LoadNetscape(const cha</span>
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868
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868
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<pre style="margin: 0;"> <span id="LC868" class="line" lang="diff"> }</span>
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869
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<pre style="margin: 0;"> <span id="LC869" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -876,8 +876,8 @@ Combined patches from git.</td>
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<pre style="margin: 0;"> <span id="LC876" class="line" lang="diff"> exit(1);</span>
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877
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<pre style="margin: 0;"> <span id="LC877" class="line" lang="diff"> }</span>
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<pre style="margin: 0;"> <span id="LC878" class="line" lang="diff"> </span>
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<pre style="margin: 0;">-<span id="LC879" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/vibrant/shim3d.c</span></span>
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880
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<pre style="margin: 0;">-<span id="LC880" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/vibrant/shim3d.c</span></span>
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<pre style="margin: 0;">+<span id="LC879" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/vibrant/shim3d.c</span></span>
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<pre style="margin: 0;">+<span id="LC880" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/vibrant/shim3d.c</span></span>
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881
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<pre style="margin: 0;"> <span id="LC881" class="line" lang="diff"><span class="p">@@ -321,6 +321,7 @@</span></span>
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882
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882
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<pre style="margin: 0;"> <span id="LC882" class="line" lang="diff"> </span>
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883
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883
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<pre style="margin: 0;"> <span id="LC883" class="line" lang="diff"> #ifdef _PNG</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="918" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -918,8 +918,8 @@ Combined patches from git.</td>
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918
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918
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<pre style="margin: 0;"> <span id="LC918" class="line" lang="diff"> MemFree(fblock);</span>
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919
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919
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<pre style="margin: 0;"> <span id="LC919" class="line" lang="diff"> }</span>
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920
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920
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<pre style="margin: 0;"> <span id="LC920" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-</span></span>
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921
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<pre style="margin: 0;">-<span id="LC921" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/vibrant/vibmain.c</span></span>
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922
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<pre style="margin: 0;">-<span id="LC922" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/vibrant/vibmain.c</span></span>
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921
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<pre style="margin: 0;">+<span id="LC921" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/vibrant/vibmain.c</span></span>
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922
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<pre style="margin: 0;">+<span id="LC922" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/vibrant/vibmain.c</span></span>
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923
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923
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<pre style="margin: 0;"> <span id="LC923" class="line" lang="diff"><span class="p">@@ -44,6 +44,21 @@</span></span>
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924
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924
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<pre style="margin: 0;"> <span id="LC924" class="line" lang="diff"> </span>
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925
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925
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<pre style="margin: 0;"> <span id="LC925" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -942,8 +942,8 @@ Combined patches from git.</td>
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942
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942
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<pre style="margin: 0;"> <span id="LC942" class="line" lang="diff"> #ifdef WIN_MAC</span>
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943
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943
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<pre style="margin: 0;"> <span id="LC943" class="line" lang="diff"> #ifdef OS_UNIX_DARWIN</span>
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<pre style="margin: 0;"> <span id="LC944" class="line" lang="diff"> int main (int argc, char *argv[]) </span>
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<pre style="margin: 0;">-<span id="LC945" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106.orig/vibrant/vibwndws.c</span></span>
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<pre style="margin: 0;">-<span id="LC946" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106/vibrant/vibwndws.c</span></span>
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<pre style="margin: 0;">+<span id="LC945" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>.orig/vibrant/vibwndws.c</span></span>
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<pre style="margin: 0;">+<span id="LC946" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ ncbi-tools6-6.1.20170106<span class="idiff left right">+dfsg1</span>/vibrant/vibwndws.c</span></span>
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<pre style="margin: 0;"> <span id="LC947" class="line" lang="diff"><span class="p">@@ -6818,7 +6818,7 @@</span> extern void Nlm_VibMainPrelude (int argc</span>
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<pre style="margin: 0;"> <span id="LC948" class="line" lang="diff"> Nlm_InitPrompt ();</span>
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<pre style="margin: 0;"> <span id="LC949" class="line" lang="diff"> Nlm_InitSlate ();</span>
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<a href="https://salsa.debian.org/med-team/ncbi-tools6/compare/b5e93c7baad2c2695f069cd86bfaf1545f1d954c...1977de0be3b269d1a2996d7c8b2d7f527616c826#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,6 +6,7 @@ export NCBI_VERSION_MAJOR=$(word 1, $(subst ., ,$(NCBI_VERSION)))</td>
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6
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">export NCBI_VERSION_MINOR=$(NCBI_VERSION:$(NCBI_VERSION_MAJOR).%=%)</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">export NCBI_VERSION_DATE =$(word 3, $(subst ., ,$(NCBI_VERSION)))</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">export NCBI_VERSION_DEBREL=$(word 2, $(subst -, ,$(NCBI_VERSION_FULL)))</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">export NCBI_VERSION_SHLIB=$(NCBI_VERSION:%+dfsg1=%)</span>
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"></span>
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">testversions:</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> env | fgrep NCBI_VERSION</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -114,23 +115,23 @@ hi = debian/ncbi-data/usr/share/icons/hicolor</td>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="plaintext">override_dh_auto_install-arch:</span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="plaintext"> install -d $(destlibdir)</span>
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="plaintext"> install -m 644 lib/* shlib/*.so.$(NCBI_VERSION) $(destlibdir)</span>
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="plaintext"> install -m 644 lib/* shlib/*.so.$(NCBI_VERSION<span class="idiff left right">_SHLIB</span>) $(destlibdir)</span>
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118
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<pre style="margin: 0;"> <span id="LC119" class="line" lang="plaintext"> for x in ncbiacc ncbiCacc netentr; do \</span>
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<pre style="margin: 0;">-<span id="LC119" class="line" lang="plaintext"> rm -f $(destlibdir)/lib$$x.so.$(NCBI_VERSION) && \</span>
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="plaintext"> rm -f $(destlibdir)/lib$$x.so.$(NCBI_VERSION<span class="idiff left right">_SHLIB</span>) && \</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
120
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<td class="diff-line-num new_line" data-linenumber="121" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
121
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="plaintext"> ln -s libncbiNacc.so.$(NCBI_VERSION_MAJOR) \</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="121" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
121
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<td class="diff-line-num new_line" data-linenumber="122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
122
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="plaintext"> $(destlibdir)/lib$$x.so.$(NCBI_VERSION_MAJOR) && \</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
122
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<td class="diff-line-num new_line" data-linenumber="123" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
123
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="plaintext"> ln -s libncbiNacc.so $(destlibdir)/lib$$x.so; \</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="123" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
123
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<td class="diff-line-num new_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
124
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext"> done</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
124
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<td class="diff-line-num new_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
125
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="plaintext"> for x in ncbicn3d vibrant; do \</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
125
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<td class="diff-line-num new_line old" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC125" class="line" lang="plaintext"> rm -f $(destlibdir)/lib$$x.so.$(NCBI_VERSION) && \</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="plaintext"> rm -f $(destlibdir)/lib$$x.so.$(NCBI_VERSION<span class="idiff left right">_SHLIB</span>) && \</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
126
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<td class="diff-line-num new_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
127
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="plaintext"> ln -s lib$${x}OGL.so.$(NCBI_VERSION_MAJOR) \</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
127
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<td class="diff-line-num new_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
128
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> $(destlibdir)/lib$$x.so.$(NCBI_VERSION_MAJOR) && \</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
128
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<td class="diff-line-num new_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
129
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="plaintext"> ln -s lib$${x}OGL.so $(destlibdir)/lib$$x.so; \</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
129
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<td class="diff-line-num new_line" data-linenumber="130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
130
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="plaintext"> done</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="130" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
130
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<td class="diff-line-num new_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
131
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="plaintext"> rm -f $(destlibdir)/libregexp.*</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
131
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<td class="diff-line-num new_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
132
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="plaintext"> cd $(destlibdir) && \</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
132
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<td class="diff-line-num new_line old" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC132" class="line" lang="plaintext"> for f in *.so.$(NCBI_VERSION); do \</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
133
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<td class="diff-line-num new_line old" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC133" class="line" lang="plaintext"> base=`basename $$f .so.$(NCBI_VERSION)` && \</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="plaintext"> for f in *.so.$(NCBI_VERSION<span class="idiff left right">_SHLIB</span>); do \</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="plaintext"> base=`basename $$f .so.$(NCBI_VERSION<span class="idiff left right">_SHLIB</span>)` && \</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
134
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<td class="diff-line-num new_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
135
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> ln -s $$f $$base.so.$(NCBI_VERSION_MAJOR) && \</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
135
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<td class="diff-line-num new_line" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
136
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> ln -s $$f $$base.so; \</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
136
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<td class="diff-line-num new_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
137
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="plaintext"> done</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -186,7 +187,6 @@ override_dh_installchangelogs:</td>
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<td class="diff-line-num old_line" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
186
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<td class="diff-line-num new_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
187
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
187
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<td class="diff-line-num new_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
188
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<pre style="margin: 0;"> <span id="LC188" class="line" lang="plaintext">override_dh_installmenu-arch:</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
188
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<td class="diff-line-num new_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
189
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<pre style="margin: 0;"> <span id="LC189" class="line" lang="plaintext"> chmod +x debian/makemenu</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
189
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<td class="diff-line-num new_line old" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC189" class="line" lang="plaintext"> debian/makemenu debian/ncbi-cn3d.install</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
190
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<td class="diff-line-num new_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
190
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="plaintext"> debian/makemenu debian/ncbi-tools-x11.install</span>
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="plaintext"># debian/makemenu -v debian/ncbi-tools-bin.install</span>
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="plaintext"> dh_installmenu</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -206,7 +206,6 @@ override_dh_installman:</td>
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="plaintext"> dh_link # otherwise runs too late to influence debian/installman</span>
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="plaintext"> chmod +x debian/installman</span>
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="plaintext">ifneq "" "$(filter ncbi-tools-bin, $(shell dh_listpackages))"</span>
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<pre style="margin: 0;">-<span id="LC209" class="line" lang="plaintext"> debian/installman ncbi-cn3d</span>
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="plaintext"> debian/installman ncbi-tools-bin</span>
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<pre style="margin: 0;"> <span id="LC210" class="line" lang="plaintext"> debian/installman ncbi-tools-x11</span>
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="plaintext">endif</span>
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<li id="f5606a935d95a2f20059a7ac1136f47b2edadbf6">
<a href="https://salsa.debian.org/med-team/ncbi-tools6/compare/b5e93c7baad2c2695f069cd86bfaf1545f1d954c...1977de0be3b269d1a2996d7c8b2d7f527616c826#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,14 +13,14 @@ Reference:</td>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> PMID: 10838572</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> URL: https://linkinghub.elsevier.com/retrieve/pii/S0968-0004(00)01561-9</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> DOI: 10.1016/S0968-0004(00)01561-9</span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> Debian-package: ncbi-<span class="idiff left right">cn3d</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> Debian-package: ncbi-<span class="idiff left right">tools-x11</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Registry:</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> - Name: OMICtools</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"> Entry: OMICS_05052</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> Debian-package: ncbi-<span class="idiff left right">cn3d</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> Debian-package: ncbi-<span class="idiff left right">tools-x11</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> - Name: bio.tools</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> Entry: cn3d</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> Debian-package: ncbi-<span class="idiff left right">cn3d</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> Debian-package: ncbi-<span class="idiff left right">tools-x11</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> - Name: SciCrunch</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> Entry: SCR_004861</span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> Debian-package: ncbi-<span class="idiff left right">cn3d</span></span></pre>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> Debian-package: ncbi-<span class="idiff left right">tools-x11</span></span></pre>
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<a href="https://salsa.debian.org/med-team/ncbi-tools6/compare/b5e93c7baad2c2695f069cd86bfaf1545f1d954c...1977de0be3b269d1a2996d7c8b2d7f527616c826#68ef9f98c01c7eecd4c605cc26048a06f3304b79"><strong>debian/watch</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">version=4</span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">opts="passive,uversionmangle=s|^|6.1.|,downloadurlmangle=s/$/ncbi.tar.gz/" \</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">opts="passive,uversionmangle=s|^|6.1.|,downloadurlmangle=s/$/ncbi.tar.gz/<span class="idiff left right">,dversionmangle=s/\+dfsg1//,repacksuffix=+dfsg1</span>" \</span>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">http://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/ (\d{8}[a-z]*)/</span></pre>
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<td class="line_content match" style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">\ No newline at end of file</td>
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<a href="https://salsa.debian.org/med-team/ncbi-tools6/compare/b5e93c7baad2c2695f069cd86bfaf1545f1d954c...1977de0be3b269d1a2996d7c8b2d7f527616c826#7d07b030c127df39824abcc3d4ec38cffaa4bef2"><strong>make/makeshlb.unx</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20,7 +20,7 @@ SH2 = `lorder *.o | tsort` $(NCBI_OTHERLIBS)</td>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="make"> <span class="nv" style="color: #008080;">$(SH1)</span> <span class="nv" style="color: #008080;">$@</span> <span class="nv" style="color: #008080;">$(SH2)</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="make"> <span class="nb" style="color: #0086b3;">rm</span> <span class="nt" style="color: #000080;">-f</span> <span class="k" style="font-weight: 600;">*</span>.o __<span class="k" style="font-weight: 600;">*</span></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="make"></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="make"><span class="nv" style="color: #008080;">so</span><span class="o" style="font-weight: 600;">=</span>so.<span class="nv" style="color: #008080;">$(NCBI_VERSION_<span class="idiff left">MAJOR)</span></span><span class="idiff">.</span><span class="nv" style="color: #008080;"><span class="idiff right">$(NCBI_VERSION_MINOR</span>)</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="make"><span class="nv" style="color: #008080;">so</span><span class="o" style="font-weight: 600;">=</span>so.<span class="nv" style="color: #008080;">$(NCBI_VERSION_<span class="idiff left right">SHLIB</span>)</span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="make"></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="make"><span class="nl">%.$(so)</span><span class="o" style="font-weight: 600;">:</span> <span class="nf" style="color: #900; font-weight: 600;">%.a</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="make"> <span class="nv" style="color: #008080;">$(CC)</span> <span class="nt" style="color: #000080;">-shared</span> <span class="nt" style="color: #000080;">-Wl</span>,-soname<span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$*</span>.so.<span class="nv" style="color: #008080;">$(NCBI_VERSION_MAJOR)</span> <span class="nt" style="color: #000080;">-o</span> <span class="nv" style="color: #008080;">$@</span> <span class="se" style="color: #d14;">\</span></span>
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