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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/kraken">Debian Med / kraken</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/kraken/commit/8e3bb2cd683a84bc63a4fd29dc1c7d57d39fff29">8e3bb2cd</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-08-01T11:21:30Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.1.1</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#1c497fbb3a46b78edf04cc2a2fa33f67e3ffbe2a">
CHANGELOG
</a>
</li>
<li class="file-stats">
<a href="#2dc15447c0ef218fd9ea8e74d9434668f7e524fd">
install_kraken.sh
</a>
</li>
<li class="file-stats">
<a href="#2075ac61243cf06c69822dbf2bf7ab04372bcd6d">
scripts/add_to_library.sh
</a>
</li>
<li class="file-stats">
<a href="#9760bb720b95c2dac9b51d32c447bc8647397e4e">
scripts/build_kraken_db.sh
</a>
</li>
<li class="file-stats">
<a href="#68b251dddaca927c126c2359e8ac89ba5c9b5deb">
scripts/check_for_jellyfish.sh
</a>
</li>
<li class="file-stats">
<a href="#f049b8cc05244415b04d5cb27b48f650e01908bc">
scripts/clean_db.sh
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</li>
<li class="file-stats">
<a href="#6efd06d5b475ac0e436a2e6bac7338ab2f92c780">
scripts/convert_gb_to_fa.pl
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</li>
<li class="file-stats">
<a href="#9b432a77f5560974c99a8d1d6e953392e6129707">
scripts/cp_into_tempfile.pl
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</li>
<li class="file-stats">
<a href="#16c00b6d9c53b146191706cc0ae38d02a5f350d7">
scripts/download_genomic_library.sh
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</li>
<li class="file-stats">
<a href="#c463e03abae1829d63b98cbcf4ebb30c1ee3b4c1">
scripts/download_taxonomy.sh
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</li>
<li class="file-stats">
<a href="#588bf625cdff229bba9f8282fbe0a63d9b5da245">
scripts/kraken
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<li class="file-stats">
<a href="#651815cf7d8c78b2b0de2f0469c97c5be11252f2">
scripts/kraken-build
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<li class="file-stats">
<a href="#7da606a9d44de8407d3ccfdb3c26f37bf2d601dd">
scripts/kraken-filter
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<li class="file-stats">
<a href="#574e1f4ac6c685ca3d2b140b40e62b87f17ea6da">
scripts/kraken-mpa-report
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</li>
<li class="file-stats">
<a href="#96e44739abd640b82b16bebfa77ea9fa54b51cfc">
scripts/kraken-report
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<li class="file-stats">
<a href="#cc4b20dad78c39a11da4ffee8b2c49f238952e3f">
scripts/kraken-translate
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<li class="file-stats">
<a href="#e2639ca740a561fe8bc49d7fec29b185c0928130">
scripts/krakenlib.pm
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<li class="file-stats">
<a href="#fb5ba3efed885f52a05623809fd573e65f8fe385">
scripts/lookup_accession_numbers.pl
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</li>
<li class="file-stats">
<a href="#1d6fc00ca47e42bb239e5007f5d9df1dfdcbb150">
scripts/read_merger.pl
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</li>
<li class="file-stats">
<a href="#3473c6d7f03773af72c5a46cde686416fce8f7c3">
scripts/report_gi_numbers.pl
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</li>
<li class="file-stats">
<a href="#add685e6a2fde9c3f6175348cfa0c6d21acb91f7">
scripts/rsync_from_ncbi.pl
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</li>
<li class="file-stats">
<a href="#d72aeacafffc613d6162b247e6b5911404a050ca">
scripts/scan_fasta_file.pl
</a>
</li>
<li class="file-stats">
<a href="#3a4350739ab04b7af3f9e4e2d247085977a4dcef">
scripts/shrink_db.sh
</a>
</li>
<li class="file-stats">
<a href="#60d24a9b10d0c9b92816752f0cb482ca74a70e81">
scripts/standard_installation.sh
</a>
</li>
<li class="file-stats">
<a href="#ce4ce4efae7fd8e9a5241a04a07fefdeddb4ba76">
scripts/upgrade_db.sh
</a>
</li>
<li class="file-stats">
<a href="#4bb8fc266a670293c036138548d00b37bbb57e21">
scripts/verify_gi_numbers.pl
</a>
</li>
<li class="file-stats">
<a href="#ef4321ed9a1ff8eaa615f518d47f10d3126d85e7">
src/classify.cpp
</a>
</li>
<li class="file-stats">
<a href="#9a8088580369bdbce7b59853b4302a0fd8964e49">
src/db_shrink.cpp
</a>
</li>
<li class="file-stats">
<a href="#8a528e84e2e5dc364e897b4ca0e2d83db9f88e04">
src/db_sort.cpp
</a>
</li>
<li class="file-stats">
<a href="#ece2b914cbf994b3a8fe3dca959c06c4b2939097">
src/kmer_estimator.cpp
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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