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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/igdiscover">Debian Med / igdiscover</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/igdiscover/commit/1cc0704112dc9fff412accdf0ed763d9e8a7acd5">1cc07041</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2019-02-12T09:25:15Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adjusting build dependencies
</pre>
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<strong><a href="https://salsa.debian.org/med-team/igdiscover/commit/df76dec71814551cc3d7914005f4a2e15635b7be">df76dec7</a></strong>
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<span>by Steffen Möller</span>
<i>at 2019-08-01T23:06:59Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fixed FTBFS with new cutadapt (>= 2.3)
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<h4>4 changed files:</h4>
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<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#7ad04b69a29538975a9105ec3d427ae9248df2cc">
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+
debian/patches/minoverlap.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
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+
debian/patches/series
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/igdiscover/compare/dc8ee7231d33b6e526845fcb32a407ead20cb1a1...df76dec71814551cc3d7914005f4a2e15635b7be#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">igdiscover (0.11-1) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">igdiscover (0.11-2) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Introduced patch for compatibility with later versions</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> of cutadapt - upstream has it already in their master branch.</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> Fri, 02 Aug 2019 00:55:02 +0200</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">igdiscover (0.11-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * Initial release (Closes: #919718)</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/igdiscover/compare/dc8ee7231d33b6e526845fcb32a407ead20cb1a1...df76dec71814551cc3d7914005f4a2e15635b7be#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -38,9 +38,8 @@ Depends: ${python3:Depends},</td>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext"> python3-cutadapt,</span>
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<td class="diff-line-num old_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> python3-scipy (>=0.16.1),</span>
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<td class="diff-line-num old_line" data-linenumber="40" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> python3-xopen (>=0.3.2),</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> python3-seaborn (>=0.9),</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> python3-ruamel.yaml</span>
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext">Recommends: python3-seaborn (>=0.8.1),</span>
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext"> python3-matplotlib</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext">Suggests: snakemake,</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> igdiscover-doc</span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext">Description: analyzes antibody repertoires to find new V genes</span>
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<a href="https://salsa.debian.org/med-team/igdiscover/compare/dc8ee7231d33b6e526845fcb32a407ead20cb1a1...df76dec71814551cc3d7914005f4a2e15635b7be#7ad04b69a29538975a9105ec3d427ae9248df2cc"><strong>debian/patches/minoverlap.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="gh" style="color: #999;">Index: igdiscover/igdiscover/utils.py</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- igdiscover.orig/igdiscover/utils.py</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ igdiscover/igdiscover/utils.py</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">@@ -330,8 +330,7 @@</span> def find_overlap(s, t, min_overlap=1):</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> >>> find_overlap('ABC', 'X') is None</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> True</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> """</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- aligner = Aligner(s, max_error_rate=0)</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- aligner.min_overlap = min_overlap</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ aligner = Aligner(s, max_error_rate=0, min_overlap=min_overlap)</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> result = aligner.locate(t)</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> if result is None:</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> return None</span></pre>
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<a href="https://salsa.debian.org/med-team/igdiscover/compare/dc8ee7231d33b6e526845fcb32a407ead20cb1a1...df76dec71814551cc3d7914005f4a2e15635b7be#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">minoverlap.patch</span></pre>
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