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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-cutadapt">Debian Med / python-cutadapt</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cutadapt/commit/2f13a4bb3e6f9fc2cedf0b58a61a4a002256c2d1">2f13a4bb</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-08-08T14:26:40Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Reupload source package
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cutadapt/commit/1cc93641e4448198966574869ca513d2572df3c9">1cc93641</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-08-08T14:26:57Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper-compat 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cutadapt/commit/42693515ecbb6888e5f25b5c95638e0376ffa14b">42693515</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-08-08T14:27:23Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Respect DEB_BUILD_OPTIONS in override_dh_auto_test target
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cutadapt/commit/546c4ec6c0909c5df5a1041af8bbfc16e80ff0c1">546c4ec6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-08-08T14:27:23Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Remove trailing whitespace in debian/changelog
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cutadapt/commit/19de3d188c6e938a0f53907838a9f8349dab5b4c">19de3d18</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-08-08T14:27:26Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use secure URI in Homepage field.
Fixes lintian: homepage-field-uses-insecure-uri
See https://lintian.debian.org/tags/homepage-field-uses-insecure-uri.html for more details.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-cutadapt/commit/d276ea584829a8e52f02ed2959bd70591cebe5db">d276ea58</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-08-08T14:29:05Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
</ul>
<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/python-cutadapt/compare/48c986c44a6a2482cef8816fadb809f852152ee6...d276ea584829a8e52f02ed2959bd70591cebe5db#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">python-cutadapt (2.4-2) unstable; urgency=medium</span>
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Reupload source package</span>
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<td class="diff-line-num new new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Closes: #934232</span>
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<td class="diff-line-num new new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> * debhelper-compat 12</span>
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<td class="diff-line-num new new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Remove trailing whitespace in debian/changelog</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Use secure URI in Homepage field.</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
</pre>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Thu, 08 Aug 2019 16:27:30 +0200</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">python-cutadapt (2.4-1) unstable; urgency=medium</span>
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<td class="diff-line-num new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<td class="diff-line-num new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> * Team upload</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="64" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -64,7 +75,7 @@ python-cutadapt (1.12-1) unstable; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="plaintext">python-cutadapt (1.11-1) unstable; urgency=medium</span>
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<td class="diff-line-num old_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"></span>
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<td class="diff-line-num old old_line" data-linenumber="67" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="plaintext"> * New upstream release<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext"> * New upstream release</span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="plaintext"> -- Olivier Sallou <osallou@debian.org> Thu, 18 Aug 2016 10:04:43 +0200</span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="plaintext"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -86,7 +97,7 @@ python-cutadapt (1.10-1) unstable; urgency=medium</td>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext">python-cutadapt (1.9.1-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="plaintext"> * New upstream release<span class="idiff left right"> </span></span>
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext"> * New upstream release</span>
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<pre style="margin: 0;"> <span id="LC101" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> -- Olivier Sallou <osallou@debian.org> Thu, 10 Dec 2015 13:56:18 +0100</span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/python-cutadapt/compare/48c986c44a6a2482cef8816fadb809f852152ee6...d276ea584829a8e52f02ed2959bd70591cebe5db#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">11</span></pre>
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<a href="https://salsa.debian.org/med-team/python-cutadapt/compare/48c986c44a6a2482cef8816fadb809f852152ee6...d276ea584829a8e52f02ed2959bd70591cebe5db#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,7 +6,7 @@ Uploaders: Olivier Sallou <osallou@debian.org>,</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Section: python</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Testsuite: autopkgtest-pkg-python</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right"> (>= 11~</span>),</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right">-compat (= 12</span>),</span>
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> dh-python,</span>
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> python3,</span>
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> python3-dev,</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -14,12 +14,12 @@ Build-Depends: debhelper (>= 11~),</td>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> python3-setuptools-scm,</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> python3-pytest-timeout,</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> python3-xopen (>= 0.5.0),</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> python3-dnaio<span class="idiff left right"> (>= 0.3)</span>,</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> python3-dnaio,</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> cython3</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Standards-Version: 4.4.0</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/python-cutadapt</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/python-cutadapt.git</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext">Homepage: http://pypi.python.org/pypi/cutadapt</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">Homepage: http<span class="idiff left right">s</span>://pypi.python.org/pypi/cutadapt</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">Package: python3-cutadapt</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">Architecture: any</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -27,7 +27,7 @@ Depends: ${misc:Depends},</td>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> ${python3:Depends},</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> ${shlibs:Depends},</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> python3-xopen (>= 0.5.0),</span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> python3-dnaio<span class="idiff left right"> (>= 0.3)</span>,</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> python3-dnaio,</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> pigz</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext">Description: Clean biological sequences from high-throughput sequencing reads (Python 3)</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> Cutadapt helps with biological sequence clean tasks by finding the adapter</span>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/python-cutadapt/compare/48c986c44a6a2482cef8816fadb809f852152ee6...d276ea584829a8e52f02ed2959bd70591cebe5db#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -26,8 +26,10 @@ override_dh_install:</td>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> mv debian/python3-cutadapt/usr/bin/cutadapt debian/cutadapt/usr/bin/</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext">ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> dh_auto_test -- -s custom --test-args="cd {build_dir}; \</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> py.test-3 --pyargs cutadapt tests"</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext">endif</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext">override_dh_auto_clean:</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext"> dh_auto_clean</span>
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