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<h3>
Steffen Möller pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/subread">Debian Med / subread</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/subread/commit/881338dd760a262820e2e2c929c87841effd8a4d">881338dd</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-08-09T14:20:29Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.6.5+dfsg</pre>
</li>
</ul>
<h4>29 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9b9715372d0cd39d21711a077b6f2ae42fb45135">
doc/SubreadUsersGuide.tex
</a>
</li>
<li class="file-stats">
<a href="#7079f81404dcaadc0154c53a419b2d1cb5f253e6">
src/HelperFunctions.c
</a>
</li>
<li class="file-stats">
<a href="#e8151656777acee64e1f016170e308d49d0a7f96">
src/HelperFunctions.h
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</li>
<li class="file-stats">
<a href="#c1b8d333291fcba8482e6874c5a8cf61b565242c">
src/Makefile.Linux
</a>
</li>
<li class="file-stats">
<a href="#03b53aa7b28dab0125f2bb23f06f341cab6c608d">
src/SNPCalling.c
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</li>
<li class="file-stats">
<a href="#296b4814ae931def4e82a8f84e22f6c24f5b3b14">
src/core-indel.c
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<li class="file-stats">
<a href="#d7c9610d0bb39f36045810aea42dfc930a2d041f">
src/core-junction.c
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</li>
<li class="file-stats">
<a href="#4db02b816f2ce650b526f0903f40471e89ca152a">
src/core-junction.h
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<li class="file-stats">
<a href="#a26ea438a2b6aee04f419d17c87da7e9b997e7ae">
src/core.c
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<li class="file-stats">
<a href="#3ff152fe6bda3f5dfee9715abff394de66921551">
src/core.h
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<li class="file-stats">
<a href="#cb694fb45e0f09c24c9a2441c1640b76efdf7b88">
src/coverage_calc.c
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<li class="file-stats">
<a href="#69742224d661e373a40a3e0ffe96a88520f33874">
src/flattenAnnotations.c
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<li class="file-stats">
<a href="#85f3d21204565d686d9ff50c4696f76a083eef6e">
src/fullscan.c
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<li class="file-stats">
<a href="#0cd9a7b1d1859b9b5f8aa2a313c4ccab061915c5">
src/gen_rand_reads.c
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<li class="file-stats">
<a href="#18d5c843fdde01c811087dacdcf7dbe1f38af4d3">
src/gene-algorithms.c
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<li class="file-stats">
<a href="#40d901ab9acccc80547ea96bc7257d6bbd327710">
src/gene-algorithms.h
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<li class="file-stats">
<a href="#18817811a7810da84ec451359a001a4b28ef5c43">
src/gene-value-index.c
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<li class="file-stats">
<a href="#2fd813b1f11075e1496e0f34a78a1b8afa7c4524">
src/gene-value-index.h
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<li class="file-stats">
<a href="#7e792aee98b451825acdf2644d56141c0c751b70">
src/global-reassembly.c
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<li class="file-stats">
<a href="#6612baeecf620e30ab51b9fb8e8a2afe1d40812b">
src/hashtable.c
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<li class="file-stats">
<a href="#db883abc086707d455e41cc6745055f2475bcc7f">
src/index-builder.c
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<li class="file-stats">
<a href="#8ef51f137a175e45ca9d53b6eaeb6f55a775893d">
<span class="new-file">
+
src/input-blc.c
</span>
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</li>
<li class="file-stats">
<a href="#1d3ea1dfb44bc278d2d0dc98242cbaff49bcccb9">
<span class="new-file">
+
src/input-blc.h
</span>
</a>
</li>
<li class="file-stats">
<a href="#af240e90f84ee342e36f1a8ee0eb08f1a4b16a3d">
src/input-files.c
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</li>
<li class="file-stats">
<a href="#6907133cceb8c785482dac4a3125dbff95a3d8e2">
src/input-files.h
</a>
</li>
<li class="file-stats">
<a href="#76cc7b82fd823387133c6778766e61c15828100c">
src/makefile.version
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</li>
<li class="file-stats">
<a href="#787706e498691849b216b7618643b7f4ec174438">
src/mergeVCF.c
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</li>
<li class="file-stats">
<a href="#f0f6828628b764f4bbcc239f3b0257341f4b5517">
src/propmapped.c
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</li>
<li class="file-stats">
<a href="#7b090c5c51823b651dc759a198e761d030b52ea4">
src/qualityScores.c
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</ul>
<h5>The diff was not included because it is too large.</h5>
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