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<h3>
Shayan Doust pushed to branch master
at <a href="https://salsa.debian.org/med-team/fast">Debian Med / fast</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/fast/commit/42b7cf7f88ce9167e23ca7ec545f8bad48b670fc">42b7cf7f</a></strong>
<div>
<span>by Shayan Doust</span>
<i>at 2019-08-09T05:33:30Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Now use system qt5 libraries
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fast/commit/f0bffb3a822a0921e8e2149790c042f95bb208ee">f0bffb3a</a></strong>
<div>
<span>by Shayan Doust</span>
<i>at 2019-08-09T05:34:30Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Libraries all seem to be sorted so we get rid of git as a build dependency
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/fast/commit/51bd5723f5b76735b7f2f9f7cfff128503cd7ad7">51bd5723</a></strong>
<div>
<span>by Shayan Doust</span>
<i>at 2019-08-09T07:35:58Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add more build dependencies
</pre>
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<h4>3 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
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<li class="file-stats">
<a href="#58de1845ac9837aefe7bb5dbaf87ab23d4590e9e">
debian/patches/remove_unneeded_installs.patch
</a>
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<li class="file-stats">
<a href="#831429e84a26d10149931553ea77c7237b78611b">
debian/patches/use_system_libs.patch
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/fast/compare/61aac01069637c02b10a550339d39199b5fb9404...51bd5723f5b76735b7f2f9f7cfff128503cd7ad7#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,7 +16,10 @@ Build-Depends: debhelper-compat (= 12),</td>
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<td class="diff-line-num new_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> libopenslide-dev,</span>
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<td class="diff-line-num old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> libopenigtlink-dev,</span>
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<td class="diff-line-num old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"> libdcmtk-dev,</span>
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<td class="diff-line-num old old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> git</span>
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> libqt5opengl5-dev,</span>
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<td class="diff-line-num new old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> libqt5serialport5-dev,</span>
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<td class="diff-line-num new old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> qtbase5-dev,</span>
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<td class="diff-line-num new new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> libqt5core5a </span>
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<td class="diff-line-num new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext">Standards-Version: 4.3.0</span>
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<td class="diff-line-num old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/fast</span>
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<td class="diff-line-num old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/fast.git</span>
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</li>
<li id="58de1845ac9837aefe7bb5dbaf87ab23d4590e9e">
<a href="https://salsa.debian.org/med-team/fast/compare/61aac01069637c02b10a550339d39199b5fb9404...51bd5723f5b76735b7f2f9f7cfff128503cd7ad7#58de1845ac9837aefe7bb5dbaf87ab23d4590e9e"><strong>debian/patches/remove_unneeded_installs.patch</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,8 +6,21 @@ Last-Update: 2019-08-08</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff">Index: fast/cmake/InstallFAST.cmake</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- fast.orig/cmake/InstallFAST.cmake 2019-08-08 15:56:39.374462089 +0100</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ fast/cmake/InstallFAST.cmake 2019-08-08 15:56:39.374462089 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- fast.orig/cmake/InstallFAST.cmake 2019-08-09 06:16:51.813007429 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ fast/cmake/InstallFAST.cmake 2019-08-09 06:20:53.938997663 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="p">@@ -47,9 +47,9 @@</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> endif()</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"> # Install Qt plugins</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-install(DIRECTORY ${PROJECT_BINARY_DIR}/plugins/</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- DESTINATION fast/QtPlugins/</span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-)</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#install(DIRECTORY ${PROJECT_BINARY_DIR}/plugins/</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# DESTINATION fast/QtPlugins/</span></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#)</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> # Install qt.conf</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"> install(FILES ${PROJECT_SOURCE_DIR}/cmake/InstallFiles/qt.conf</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="diff"><span class="p">@@ -185,18 +185,18 @@</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="diff"> )</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="diff"> </span>
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<li id="831429e84a26d10149931553ea77c7237b78611b">
<a href="https://salsa.debian.org/med-team/fast/compare/61aac01069637c02b10a550339d39199b5fb9404...51bd5723f5b76735b7f2f9f7cfff128503cd7ad7#831429e84a26d10149931553ea77c7237b78611b"><strong>debian/patches/use_system_libs.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,13 +5,32 @@ Author: Shayan Doust <hello@shayandoust.me></td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff">Index: fast/CMakeLists.txt</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- fast.orig/CMakeLists.txt 2019-08-09 04:17:42.918244664 +0100</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ fast/CMakeLists.txt 2019-08-09 04:17:57.242362402 +0100</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"><span class="p">@@ -170,6 +170,17 @@</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- fast.orig/CMakeLists.txt 2019-08-09 05:56:37.211023586 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ fast/CMakeLists.txt 2019-08-09 05:57:42.647561464 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="p">@@ -34,7 +34,7 @@</span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> option(FAST_MODULE_WholeSlideImaging "Build whole slide imaging module" OFF)</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> option(FAST_MODULE_Clarius "Build clarius ultrasound module" OFF)</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> option(FAST_CONTINUOUS_INTEGRATION "Used for continuous integration tests" OFF)</span>
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<td class="diff-line-num new new_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-option(FAST_BUILD_QT5 "Download and build Qt 5.8. Turn this OFF if you want to use pre-built binaries you already have on your machine." ON)</span></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+option(FAST_BUILD_QT5 "Download and build Qt 5.8. Turn this OFF if you want to use pre-built binaries you already have on your machine." OFF)</span></span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> </span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> # Python version</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> set(FAST_Python_Version "" CACHE STRING "Specify which Python version to build python wrappers with. E.g. 2 or 3")</span>
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<td class="diff-line-num new new_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="p">@@ -157,7 +157,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> #### Create FAST library and executables</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"> add_library(FAST SHARED ${FAST_SOURCE_FILES} ${HEADERS_MOC})</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-add_dependencies(FAST ${FAST_EXTERNAL_DEPENDENCIES})</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#add_dependencies(FAST ${FAST_EXTERNAL_DEPENDENCIES})</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> include(GenerateExportHeader)</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> generate_export_header(FAST EXPORT_FILE_NAME FASTExport.hpp)</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="p">@@ -170,6 +170,18 @@</span></span>
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11
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="diff"> qt5_use_modules(FAST Widgets OpenGL) # Add Qt 5 modules</span>
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12
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="diff"> endif()</span>
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13
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="diff"> </span>
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14
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+find_package(Eigen3 REQUIRED)</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+find_package(Qt5 REQUIRED SerialPort)</span></span>
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15
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<td class="diff-line-num old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+target_link_libraries(FAST PUBLIC Eigen3::Eigen)</span></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+target_link_libraries(FAST PUBLIC openslide)</span></span>
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