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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-deeptools">Debian Med / python-deeptools</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/python-deeptools/commit/5eb159fc9d93d5970abc8e23a9879de6e1aa3d43">5eb159fc</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2019-08-09T19:59:56Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fixed more paths to python
</pre>
</li>
</ul>
<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#2263fc7f818177f357e546bb14208fd443db0aab">
debian/patches/python2to3_for_executables.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="2263fc7f818177f357e546bb14208fd443db0aab">
<a href="https://salsa.debian.org/med-team/python-deeptools/commit/5eb159fc9d93d5970abc8e23a9879de6e1aa3d43#2263fc7f818177f357e546bb14208fd443db0aab"><strong>debian/patches/python2to3_for_executables.patch</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -212,3 +212,263 @@ Index: python-deeptools-3.3.0/bin/plotProfile</td>
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="diff"> #-*- coding: utf-8 -*-</span>
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="diff"> import deeptools.misc</span>
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<pre style="margin: 0;">+<span id="LC215" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/plotPCA.py</span></span>
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<pre style="margin: 0;">+<span id="LC216" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/plotPCA.py</span></span>
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<td class="diff-line-num new new_line" data-linenumber="218" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/plotPCA.py</span></span>
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="diff"> # -*- coding: utf-8 -*-</span>
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="diff"> import sys</span>
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/SES_scaleFactor.py</span></span>
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/SES_scaleFactor.py</span></span>
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/SES_scaleFactor.py</span></span>
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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<pre style="margin: 0;">+<span id="LC232" class="line" lang="diff"> # -*- coding: utf-8 -*-</span>
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<pre style="margin: 0;">+<span id="LC234" class="line" lang="diff"> import os</span>
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<pre style="margin: 0;">+<span id="LC235" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/alignmentSieve.py</span></span>
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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237
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/alignmentSieve.py</span></span>
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238
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<pre style="margin: 0;">+<span id="LC238" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/alignmentSieve.py</span></span>
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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240
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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241
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="diff"> import argparse</span>
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243
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="diff"> import pysam</span>
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244
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<pre style="margin: 0;">+<span id="LC244" class="line" lang="diff"> import os</span>
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<pre style="margin: 0;">+<span id="LC245" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/bamCompare.py</span></span>
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<pre style="margin: 0;">+<span id="LC246" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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247
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<pre style="margin: 0;">+<span id="LC247" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/bamCompare.py</span></span>
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248
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<pre style="margin: 0;">+<span id="LC248" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/bamCompare.py</span></span>
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249
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<pre style="margin: 0;">+<span id="LC249" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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250
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<pre style="margin: 0;">+<span id="LC250" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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251
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<pre style="margin: 0;">+<span id="LC251" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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<pre style="margin: 0;">+<span id="LC252" class="line" lang="diff"> # -*- coding: utf-8 -*-</span>
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253
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<pre style="margin: 0;">+<span id="LC253" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC254" class="line" lang="diff"> import argparse # to parse command line arguments</span>
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<pre style="margin: 0;">+<span id="LC255" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/bamCoverage.py</span></span>
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256
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<pre style="margin: 0;">+<span id="LC256" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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257
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<pre style="margin: 0;">+<span id="LC257" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/bamCoverage.py</span></span>
</pre>
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258
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<pre style="margin: 0;">+<span id="LC258" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/bamCoverage.py</span></span>
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259
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<pre style="margin: 0;">+<span id="LC259" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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260
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<pre style="margin: 0;">+<span id="LC260" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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261
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<pre style="margin: 0;">+<span id="LC261" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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262
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<pre style="margin: 0;">+<span id="LC262" class="line" lang="diff"> # -*- coding: utf-8 -*-</span>
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263
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<pre style="margin: 0;">+<span id="LC263" class="line" lang="diff"> </span>
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264
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<pre style="margin: 0;">+<span id="LC264" class="line" lang="diff"> # own tools</span>
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265
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<pre style="margin: 0;">+<span id="LC265" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/bamPEFragmentSize.py</span></span>
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266
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<pre style="margin: 0;">+<span id="LC266" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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267
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<pre style="margin: 0;">+<span id="LC267" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/bamPEFragmentSize.py</span></span>
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268
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<pre style="margin: 0;">+<span id="LC268" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/bamPEFragmentSize.py</span></span>
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<pre style="margin: 0;">+<span id="LC269" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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<pre style="margin: 0;">+<span id="LC271" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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272
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="diff"> # -*- coding: utf-8 -*-</span>
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273
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="diff"> </span>
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274
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="diff"> import argparse</span>
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275
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/bigwigCompare.py</span></span>
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276
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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277
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/bigwigCompare.py</span></span>
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278
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/bigwigCompare.py</span></span>
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279
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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280
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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281
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<pre style="margin: 0;">+<span id="LC281" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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282
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="diff"> # -*- coding: utf-8 -*-</span>
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<pre style="margin: 0;">+<span id="LC283" class="line" lang="diff"> import argparse # to parse command line arguments</span>
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<pre style="margin: 0;">+<span id="LC284" class="line" lang="diff"> import sys</span>
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<pre style="margin: 0;">+<span id="LC285" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/computeGCBias.py</span></span>
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<pre style="margin: 0;">+<span id="LC286" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">+<span id="LC287" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/computeGCBias.py</span></span>
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<pre style="margin: 0;">+<span id="LC288" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/computeGCBias.py</span></span>
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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<pre style="margin: 0;">+<span id="LC290" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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291
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<pre style="margin: 0;">+<span id="LC291" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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<pre style="margin: 0;">+<span id="LC292" class="line" lang="diff"> # -*- coding: utf-8 -*-</span>
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293
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<pre style="margin: 0;">+<span id="LC293" class="line" lang="diff"> </span>
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294
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<pre style="margin: 0;">+<span id="LC294" class="line" lang="diff"> import time</span>
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<pre style="margin: 0;">+<span id="LC295" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/computeMatrix.py</span></span>
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<pre style="margin: 0;">+<span id="LC296" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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297
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<pre style="margin: 0;">+<span id="LC297" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/computeMatrix.py</span></span>
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298
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<pre style="margin: 0;">+<span id="LC298" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/computeMatrix.py</span></span>
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299
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<pre style="margin: 0;">+<span id="LC299" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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300
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<pre style="margin: 0;">+<span id="LC300" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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301
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<pre style="margin: 0;">+<span id="LC301" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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<pre style="margin: 0;">+<span id="LC302" class="line" lang="diff"> # -*- coding: utf-8 -*-</span>
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<pre style="margin: 0;">+<span id="LC303" class="line" lang="diff"> </span>
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304
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<pre style="margin: 0;">+<span id="LC304" class="line" lang="diff"> import argparse</span>
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305
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<pre style="margin: 0;">+<span id="LC305" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/computeMatrixOperations.py</span></span>
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306
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<pre style="margin: 0;">+<span id="LC306" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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307
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<pre style="margin: 0;">+<span id="LC307" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/computeMatrixOperations.py</span></span>
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<pre style="margin: 0;">+<span id="LC308" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/computeMatrixOperations.py</span></span>
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309
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<pre style="margin: 0;">+<span id="LC309" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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310
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<pre style="margin: 0;">+<span id="LC310" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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311
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<pre style="margin: 0;">+<span id="LC311" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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312
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<pre style="margin: 0;">+<span id="LC312" class="line" lang="diff"> import deeptools.heatmapper as heatmapper</span>
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313
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<pre style="margin: 0;">+<span id="LC313" class="line" lang="diff"> import deeptoolsintervals.parse as dti</span>
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314
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<pre style="margin: 0;">+<span id="LC314" class="line" lang="diff"> import numpy as np</span>
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315
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<pre style="margin: 0;">+<span id="LC315" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/correctGCBias.py</span></span>
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316
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<pre style="margin: 0;">+<span id="LC316" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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317
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<pre style="margin: 0;">+<span id="LC317" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/correctGCBias.py</span></span>
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318
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<pre style="margin: 0;">+<span id="LC318" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/correctGCBias.py</span></span>
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<pre style="margin: 0;">+<span id="LC319" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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<pre style="margin: 0;">+<span id="LC320" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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321
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<pre style="margin: 0;">+<span id="LC321" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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<pre style="margin: 0;">+<span id="LC322" class="line" lang="diff"> # -*- coding: utf-8 -*-</span>
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323
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<pre style="margin: 0;">+<span id="LC323" class="line" lang="diff"> </span>
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324
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<pre style="margin: 0;">+<span id="LC324" class="line" lang="diff"> import os</span>
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325
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<pre style="margin: 0;">+<span id="LC325" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/deepBlue.py</span></span>
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326
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<pre style="margin: 0;">+<span id="LC326" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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327
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<pre style="margin: 0;">+<span id="LC327" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/deepBlue.py</span></span>
</pre>
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328
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<pre style="margin: 0;">+<span id="LC328" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/deepBlue.py</span></span>
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329
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<pre style="margin: 0;">+<span id="LC329" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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330
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<pre style="margin: 0;">+<span id="LC330" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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331
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<pre style="margin: 0;">+<span id="LC331" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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<pre style="margin: 0;">+<span id="LC332" class="line" lang="diff"> try:</span>
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333
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<pre style="margin: 0;">+<span id="LC333" class="line" lang="diff"> # python 2</span>
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<pre style="margin: 0;">+<span id="LC334" class="line" lang="diff"> import xmlrpclib</span>
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335
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<pre style="margin: 0;">+<span id="LC335" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/deeptools_list_tools.py</span></span>
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336
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<pre style="margin: 0;">+<span id="LC336" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">+<span id="LC337" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/deeptools_list_tools.py</span></span>
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338
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<pre style="margin: 0;">+<span id="LC338" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/deeptools_list_tools.py</span></span>
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339
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<pre style="margin: 0;">+<span id="LC339" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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340
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<pre style="margin: 0;">+<span id="LC340" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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<pre style="margin: 0;">+<span id="LC341" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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<pre style="margin: 0;">+<span id="LC342" class="line" lang="diff"> # -*- coding: utf-8 -*-</span>
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343
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<pre style="margin: 0;">+<span id="LC343" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC344" class="line" lang="diff"> import argparse</span>
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<pre style="margin: 0;">+<span id="LC345" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/estimateReadFiltering.py</span></span>
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346
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<pre style="margin: 0;">+<span id="LC346" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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347
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<pre style="margin: 0;">+<span id="LC347" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/estimateReadFiltering.py</span></span>
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348
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<pre style="margin: 0;">+<span id="LC348" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/estimateReadFiltering.py</span></span>
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349
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<pre style="margin: 0;">+<span id="LC349" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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350
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<pre style="margin: 0;">+<span id="LC350" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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351
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<pre style="margin: 0;">+<span id="LC351" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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352
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<pre style="margin: 0;">+<span id="LC352" class="line" lang="diff"> import argparse</span>
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353
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<pre style="margin: 0;">+<span id="LC353" class="line" lang="diff"> import sys</span>
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354
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<pre style="margin: 0;">+<span id="LC354" class="line" lang="diff"> </span>
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355
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<pre style="margin: 0;">+<span id="LC355" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/getScaleFactor.py</span></span>
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356
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<pre style="margin: 0;">+<span id="LC356" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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357
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<pre style="margin: 0;">+<span id="LC357" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/getScaleFactor.py</span></span>
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358
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<pre style="margin: 0;">+<span id="LC358" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/getScaleFactor.py</span></span>
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<pre style="margin: 0;">+<span id="LC359" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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360
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<pre style="margin: 0;">+<span id="LC360" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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361
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<pre style="margin: 0;">+<span id="LC361" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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362
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<pre style="margin: 0;">+<span id="LC362" class="line" lang="diff"> # -*- coding: utf-8 -*-</span>
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363
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<pre style="margin: 0;">+<span id="LC363" class="line" lang="diff"> </span>
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364
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<pre style="margin: 0;">+<span id="LC364" class="line" lang="diff"> import numpy as np</span>
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365
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<pre style="margin: 0;">+<span id="LC365" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/multiBamSummary.py</span></span>
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366
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<pre style="margin: 0;">+<span id="LC366" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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367
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<pre style="margin: 0;">+<span id="LC367" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/multiBamSummary.py</span></span>
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368
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<pre style="margin: 0;">+<span id="LC368" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/multiBamSummary.py</span></span>
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369
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<pre style="margin: 0;">+<span id="LC369" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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370
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<pre style="margin: 0;">+<span id="LC370" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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371
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<pre style="margin: 0;">+<span id="LC371" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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372
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<pre style="margin: 0;">+<span id="LC372" class="line" lang="diff"> # -*- coding: utf-8 -*-</span>
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373
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<pre style="margin: 0;">+<span id="LC373" class="line" lang="diff"> </span>
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374
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<pre style="margin: 0;">+<span id="LC374" class="line" lang="diff"> import os</span>
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375
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<pre style="margin: 0;">+<span id="LC375" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/multiBigwigSummary.py</span></span>
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376
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<pre style="margin: 0;">+<span id="LC376" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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377
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<pre style="margin: 0;">+<span id="LC377" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/multiBigwigSummary.py</span></span>
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378
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<pre style="margin: 0;">+<span id="LC378" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/multiBigwigSummary.py</span></span>
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379
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<pre style="margin: 0;">+<span id="LC379" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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380
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<pre style="margin: 0;">+<span id="LC380" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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381
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<pre style="margin: 0;">+<span id="LC381" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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382
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<pre style="margin: 0;">+<span id="LC382" class="line" lang="diff"> # -*- coding: utf-8 -*-</span>
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383
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<pre style="margin: 0;">+<span id="LC383" class="line" lang="diff"> </span>
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384
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<pre style="margin: 0;">+<span id="LC384" class="line" lang="diff"> import sys</span>
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385
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<pre style="margin: 0;">+<span id="LC385" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/plotCorrelation.py</span></span>
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386
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<pre style="margin: 0;">+<span id="LC386" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<td class="diff-line-num new new_line" data-linenumber="387" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
387
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<pre style="margin: 0;">+<span id="LC387" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/plotCorrelation.py</span></span>
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<td class="diff-line-num new new_line" data-linenumber="388" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
388
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<pre style="margin: 0;">+<span id="LC388" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/plotCorrelation.py</span></span>
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389
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<pre style="margin: 0;">+<span id="LC389" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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390
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<pre style="margin: 0;">+<span id="LC390" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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391
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<pre style="margin: 0;">+<span id="LC391" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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392
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<pre style="margin: 0;">+<span id="LC392" class="line" lang="diff"> # -*- coding: utf-8 -*-</span>
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393
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<pre style="margin: 0;">+<span id="LC393" class="line" lang="diff"> </span>
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394
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<pre style="margin: 0;">+<span id="LC394" class="line" lang="diff"> import sys</span>
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395
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<pre style="margin: 0;">+<span id="LC395" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/plotCoverage.py</span></span>
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396
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<pre style="margin: 0;">+<span id="LC396" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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397
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<pre style="margin: 0;">+<span id="LC397" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/plotCoverage.py</span></span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
398
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<pre style="margin: 0;">+<span id="LC398" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/plotCoverage.py</span></span>
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399
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<pre style="margin: 0;">+<span id="LC399" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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400
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<pre style="margin: 0;">+<span id="LC400" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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401
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<pre style="margin: 0;">+<span id="LC401" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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402
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<pre style="margin: 0;">+<span id="LC402" class="line" lang="diff"> # -*- coding: utf-8 -*-</span>
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403
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<pre style="margin: 0;">+<span id="LC403" class="line" lang="diff"> </span>
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404
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<pre style="margin: 0;">+<span id="LC404" class="line" lang="diff"> import os</span>
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405
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<pre style="margin: 0;">+<span id="LC405" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/plotEnrichment.py</span></span>
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406
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<pre style="margin: 0;">+<span id="LC406" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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407
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<pre style="margin: 0;">+<span id="LC407" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/plotEnrichment.py</span></span>
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408
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<pre style="margin: 0;">+<span id="LC408" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/plotEnrichment.py</span></span>
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409
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<pre style="margin: 0;">+<span id="LC409" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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410
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<pre style="margin: 0;">+<span id="LC410" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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411
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<pre style="margin: 0;">+<span id="LC411" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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412
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<pre style="margin: 0;">+<span id="LC412" class="line" lang="diff"> # -*- coding: utf-8 -*-</span>
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413
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<pre style="margin: 0;">+<span id="LC413" class="line" lang="diff"> </span>
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414
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<pre style="margin: 0;">+<span id="LC414" class="line" lang="diff"> import sys</span>
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415
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<pre style="margin: 0;">+<span id="LC415" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/plotFingerprint.py</span></span>
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416
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<pre style="margin: 0;">+<span id="LC416" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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417
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<pre style="margin: 0;">+<span id="LC417" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/plotFingerprint.py</span></span>
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418
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<pre style="margin: 0;">+<span id="LC418" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/plotFingerprint.py</span></span>
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419
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<pre style="margin: 0;">+<span id="LC419" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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420
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<pre style="margin: 0;">+<span id="LC420" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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421
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<pre style="margin: 0;">+<span id="LC421" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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422
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<pre style="margin: 0;">+<span id="LC422" class="line" lang="diff"> # -*- coding: utf-8 -*-</span>
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423
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<pre style="margin: 0;">+<span id="LC423" class="line" lang="diff"> </span>
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424
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<pre style="margin: 0;">+<span id="LC424" class="line" lang="diff"> import numpy as np</span>
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425
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<pre style="margin: 0;">+<span id="LC425" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/plotHeatmap.py</span></span>
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426
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<pre style="margin: 0;">+<span id="LC426" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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427
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<pre style="margin: 0;">+<span id="LC427" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/plotHeatmap.py</span></span>
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428
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<pre style="margin: 0;">+<span id="LC428" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/plotHeatmap.py</span></span>
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429
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<pre style="margin: 0;">+<span id="LC429" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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430
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<pre style="margin: 0;">+<span id="LC430" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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<pre style="margin: 0;">+<span id="LC431" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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432
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<pre style="margin: 0;">+<span id="LC432" class="line" lang="diff"> # -*- coding: utf-8 -*-</span>
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433
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<pre style="margin: 0;">+<span id="LC433" class="line" lang="diff"> from __future__ import division</span>
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434
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<pre style="margin: 0;">+<span id="LC434" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC435" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/plotProfile.py</span></span>
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436
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<pre style="margin: 0;">+<span id="LC436" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">+<span id="LC437" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/plotProfile.py</span></span>
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438
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<pre style="margin: 0;">+<span id="LC438" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/plotProfile.py</span></span>
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<pre style="margin: 0;">+<span id="LC439" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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440
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<pre style="margin: 0;">+<span id="LC440" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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441
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<pre style="margin: 0;">+<span id="LC441" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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<pre style="margin: 0;">+<span id="LC442" class="line" lang="diff"> # -*- coding: utf-8 -*-</span>
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443
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<pre style="margin: 0;">+<span id="LC443" class="line" lang="diff"> </span>
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444
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<pre style="margin: 0;">+<span id="LC444" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC445" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/deeptools/writeBedGraph_bam_and_bw.py</span></span>
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446
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<pre style="margin: 0;">+<span id="LC446" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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447
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<pre style="margin: 0;">+<span id="LC447" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/deeptools/writeBedGraph_bam_and_bw.py</span></span>
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448
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<pre style="margin: 0;">+<span id="LC448" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/deeptools/writeBedGraph_bam_and_bw.py</span></span>
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449
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<pre style="margin: 0;">+<span id="LC449" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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450
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<pre style="margin: 0;">+<span id="LC450" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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451
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<pre style="margin: 0;">+<span id="LC451" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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452
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<pre style="margin: 0;">+<span id="LC452" class="line" lang="diff"> # -*- coding: utf-8 -*-</span>
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453
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<pre style="margin: 0;">+<span id="LC453" class="line" lang="diff"> </span>
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454
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<pre style="margin: 0;">+<span id="LC454" class="line" lang="diff"> import os</span>
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455
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<pre style="margin: 0;">+<span id="LC455" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/scripts/convertChromsBigWig.py</span></span>
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<pre style="margin: 0;">+<span id="LC456" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">+<span id="LC457" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/scripts/convertChromsBigWig.py</span></span>
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<pre style="margin: 0;">+<span id="LC458" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/scripts/convertChromsBigWig.py</span></span>
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<pre style="margin: 0;">+<span id="LC459" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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<pre style="margin: 0;">+<span id="LC460" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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<pre style="margin: 0;">+<span id="LC461" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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<pre style="margin: 0;">+<span id="LC462" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC463" class="line" lang="diff"> import sys</span>
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<pre style="margin: 0;">+<span id="LC464" class="line" lang="diff"> import pyBigWig</span>
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<pre style="margin: 0;">+<span id="LC465" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools-3.3.0/scripts/split_bed_into_multiple_files.py</span></span>
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<pre style="margin: 0;">+<span id="LC466" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">+<span id="LC467" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools-3.3.0.orig/scripts/split_bed_into_multiple_files.py</span></span>
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<pre style="margin: 0;">+<span id="LC468" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools-3.3.0/scripts/split_bed_into_multiple_files.py</span></span>
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<pre style="margin: 0;">+<span id="LC469" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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<pre style="margin: 0;">+<span id="LC470" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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<pre style="margin: 0;">+<span id="LC471" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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<pre style="margin: 0;">+<span id="LC472" class="line" lang="diff"> # -*- coding: utf-8 -*-</span>
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<pre style="margin: 0;">+<span id="LC473" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC474" class="line" lang="diff"> """</span></pre>
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<li id="8756c63497c8dc39f7773438edf53b220c773f67">
<a href="https://salsa.debian.org/med-team/python-deeptools/commit/5eb159fc9d93d5970abc8e23a9879de6e1aa3d43#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="10" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -10,9 +10,10 @@ export PYBUILD_NAME=deeptools</td>
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"># PYTHONPATH=$(CURDIR)/debian/python3-deeptools/usr/lib/python3/dist-packages:/usr/lib/python3/dist-packages nosetests3 -x</span>
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">override_dh_auto_test:</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> python3 -m unittest discover -v</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> #python3 -m unittest discover -v</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> PYTHONPATH=$(CURDIR) nosetests3 -x -v -s deeptools</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">override_dh_auto_clean:</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> dh_auto_clean</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> rm -rf .pytest_cache</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> rm -rf .pytest_cache<span class="idiff left right"> deeptools/__pycache__</span></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext"></span></pre>
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