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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-deeptoolsintervals">Debian Med / python-deeptoolsintervals</a>
</h3>
<h4>
Commits:
</h4>
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<li>
<strong><a href="https://salsa.debian.org/med-team/python-deeptoolsintervals/commit/9261632b7fb7077460b4735a0a8d6c403bc8bc55">9261632b</a></strong>
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<span>by Steffen Möller</span>
<i>at 2019-08-07T18:33:27Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.1.9</pre>
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<strong><a href="https://salsa.debian.org/med-team/python-deeptoolsintervals/commit/eefe163e7cc34efb56a93e938def9b6f49050ed5">eefe163e</a></strong>
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<span>by Steffen Möller</span>
<i>at 2019-08-07T18:33:27Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/0.1.9'
Update to upstream version '0.1.9'
with Debian dir d5c77295a3b8523425b00ef42edc95cbdc962d97</pre>
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<strong><a href="https://salsa.debian.org/med-team/python-deeptoolsintervals/commit/4664241591ba10f2650172e8c9204ccfb9872cf3">46642415</a></strong>
<div>
<span>by Steffen Möller</span>
<i>at 2019-08-11T15:27:22Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix FTBFS
</pre>
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<h4>5 changed files:</h4>
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<a href="#0398ccd0f49298b10a3d76a47800d2ebecd49859">
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+
LICENSE
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<li class="file-stats">
<a href="#8875df48c18030126ef5ef5a6f5c93b23451fb9f">
MANIFEST.in
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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<h4>Changes:</h4>
<li id="0398ccd0f49298b10a3d76a47800d2ebecd49859">
<a href="https://salsa.debian.org/med-team/python-deeptoolsintervals/compare/d152a14bba23b46c8b79e847c29d6ddd03d70cb7...4664241591ba10f2650172e8c9204ccfb9872cf3#0398ccd0f49298b10a3d76a47800d2ebecd49859"><strong>LICENSE</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Copyright 2019 Max Planck Institute for Immunobiology and Epigenetics</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.</span></pre>
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<a href="https://salsa.debian.org/med-team/python-deeptoolsintervals/compare/d152a14bba23b46c8b79e847c29d6ddd03d70cb7...4664241591ba10f2650172e8c9204ccfb9872cf3#8875df48c18030126ef5ef5a6f5c93b23451fb9f"><strong>MANIFEST.in</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">include README.md setup.py</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">include LICENSE</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">include deeptoolsintervals/tree.*</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">include deeptoolsintervals/tree/*.c</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">include deeptoolsintervals/tree/*.h</span>
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<a href="https://salsa.debian.org/med-team/python-deeptoolsintervals/compare/d152a14bba23b46c8b79e847c29d6ddd03d70cb7...4664241591ba10f2650172e8c9204ccfb9872cf3#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">python-deeptoolsintervals (0.1.<span class="idiff left right">8</span>-1) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">python-deeptoolsintervals (0.1.<span class="idiff left right">9</span>-1) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> * Initial release (Closes: #934172)</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> Wed, 07 Aug 2019 20:34:03 +0200</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">python-deeptoolsintervals (0.1.8-1) UNRELEASED; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Initial packaging.</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> -- Steffen Moeller <moeller@debian.org> Wed, 07 Aug 2019 19:49:42 +0200</span></pre>
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<a href="https://salsa.debian.org/med-team/python-deeptoolsintervals/compare/d152a14bba23b46c8b79e847c29d6ddd03d70cb7...4664241591ba10f2650172e8c9204ccfb9872cf3#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3,7 +3,10 @@ Section: science</td>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Uploaders: Steffen Moeller <moeller@debian.org></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper (>= 11), dh-python, python3-all, python3-setuptools</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Build-Depends: debhelper (>= 11),</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> dh-python,</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> python3-all, python3-dev, python3-setuptools,</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> zlib1g-dev</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">Standards-Version: 4.4.0</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext">Homepage: https://github.com/deeptools/deeptools_intervals/</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/python-deeptoolsintervals</span>
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<a href="https://salsa.debian.org/med-team/python-deeptoolsintervals/compare/d152a14bba23b46c8b79e847c29d6ddd03d70cb7...4664241591ba10f2650172e8c9204ccfb9872cf3#8e2edce0d507e1297474f25c00cae94258db38d8"><strong>setup.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -26,7 +26,7 @@ module1 = Extension('deeptoolsintervals.tree',</td>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="python"> <span class="n" style="color: #333;">include_dirs</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="n" style="color: #333;">sysconfig</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">get_config_var</span><span class="p">(</span><span class="s" style="color: #d14;">"INCLUDEPY"</span><span class="p">)])</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="python"><span class="n" style="color: #333;">setup</span><span class="p">(</span><span class="n" style="color: #333;">name</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'deeptoolsintervals'</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="python"> <span class="n" style="color: #333;">version</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'0.1.<span class="idiff left right">8</span>'</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="python"> <span class="n" style="color: #333;">version</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'0.1.<span class="idiff left right">9</span>'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="python"> <span class="n" style="color: #333;">description</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">'A python module creating/accessing GTF-based interval trees with associated meta-data'</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="python"> <span class="n" style="color: #333;">author</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"Devon P. Ryan"</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="python"> <span class="n" style="color: #333;">author_email</span><span class="o" style="font-weight: 600;">=</span><span class="s" style="color: #d14;">"ryan@ie-freiburg.mpg.de"</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -34,7 +34,7 @@ setup(name='deeptoolsintervals',</td>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="python"> <span class="n" style="color: #333;">keywords</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">"bioinformatics"</span><span class="p">,</span> <span class="s" style="color: #d14;">"GTF"</span><span class="p">],</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="python"> <span class="n" style="color: #333;">classifier</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">"Development Status :: 5 - Production/Stable"</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="python"> <span class="s" style="color: #d14;">"Environment :: Console"</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="python"> <span class="s" style="color: #d14;">"License :: OSI Approved :: <span class="idiff left right">GNU Library or Lesser General Public License (LGPL)</span>"</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="python"> <span class="s" style="color: #d14;">"License :: OSI Approved :: <span class="idiff left right">MIT License</span>"</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="python"> <span class="s" style="color: #d14;">"Intended Audience :: Developers"</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="python"> <span class="s" style="color: #d14;">"Programming Language :: C"</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="python"> <span class="s" style="color: #d14;">"Programming Language :: Python"</span><span class="p">,</span></span>
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