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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/python-deeptools">Debian Med / python-deeptools</a>
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<h4>
Commits:
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<li>
<strong><a href="https://salsa.debian.org/med-team/python-deeptools/commit/73459d1ba3b09ef1d5007b657177651043b50648">73459d1b</a></strong>
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<span>by Steffen Möller</span>
<i>at 2019-08-11T10:41:25Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Testing now works
Excluded tests is in "testskip..." file that apparently is not skipped,
upstream knows of dependency of exlcluded patch on matplotlib version
https://github.com/deeptools/deepTools/issues/858
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<h4>4 changed files:</h4>
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<li class="file-stats">
<a href="#cf9802e192b48f765b1b5c8268d550d89c933053">
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+
debian/README.source
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<li class="file-stats">
<a href="#8f3fac697cf33a8fe015160013135f1ed63b490b">
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+
debian/patches/deactivateFailingPatch.patch
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<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="cf9802e192b48f765b1b5c8268d550d89c933053">
<a href="https://salsa.debian.org/med-team/python-deeptools/commit/73459d1ba3b09ef1d5007b657177651043b50648#cf9802e192b48f765b1b5c8268d550d89c933053"><strong>debian/README.source</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">Changes on source tree of deeptools</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">===================================</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">python2to3_for_executables.patch</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> The shebang line is adjusted to /usr/bin/python3</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">deactivateFailingPatch.patch</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> Following an exchange with upstream on</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> https://github.com/deeptools/deepTools/issues/858</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> this is considered to be an artifact of version dependencies</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> of the matplotlib.</span></pre>
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<li id="8f3fac697cf33a8fe015160013135f1ed63b490b">
<a href="https://salsa.debian.org/med-team/python-deeptools/commit/73459d1ba3b09ef1d5007b657177651043b50648#8f3fac697cf33a8fe015160013135f1ed63b490b"><strong>debian/patches/deactivateFailingPatch.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="gh" style="color: #999;">Index: python-deeptools/deeptools/test/testskip_heatmapper_images.py</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- python-deeptools.orig/deeptools/test/testskip_heatmapper_images.py</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ python-deeptools/deeptools/test/testskip_heatmapper_images.py</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">@@ -69,14 +69,14 @@</span> def test_plotHeatmap_multiple_colors_mut</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> os.remove(outfile.name)</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-def test_plotHeatmap_multiple_colormap_no_boxes():</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- outfile = NamedTemporaryFile(suffix='.png', prefix='plotHeatmap_test_', delete=False)</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- args = "-m {}/master_multi.mat.gz --colorMap Reds binary terrain --boxAroundHeatmaps no " \</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- "--outFileName {}".format(ROOT, outfile.name).split()</span></span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- deeptools.plotHeatmap.main(args)</span></span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- res = compare_images(ROOT + '/heatmap_master_multi_colormap_no_box.png', outfile.name, tolerance)</span></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- assert res is None, res</span></span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- os.remove(outfile.name)</span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#def test_plotHeatmap_multiple_colormap_no_boxes():</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# outfile = NamedTemporaryFile(suffix='.png', prefix='plotHeatmap_test_', delete=False)</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# args = "-m {}/master_multi.mat.gz --colorMap Reds binary terrain --boxAroundHeatmaps no " \</span></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# "--outFileName {}".format(ROOT, outfile.name).split()</span></span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# deeptools.plotHeatmap.main(args)</span></span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# res = compare_images(ROOT + '/heatmap_master_multi_colormap_no_box.png', outfile.name, tolerance)</span></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# assert res is None, res</span></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# os.remove(outfile.name)</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> </span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> </span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"> def test_plotHeatmap_interpolation():</span></pre>
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<a href="https://salsa.debian.org/med-team/python-deeptools/commit/73459d1ba3b09ef1d5007b657177651043b50648#bc34014ab4b9a49dd7a27bdd8d352912607c3a96"><strong>debian/patches/series</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">python2to3_for_executables.patch</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">deactivateFailingPatch.patch</span></pre>
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<a href="https://salsa.debian.org/med-team/python-deeptools/commit/73459d1ba3b09ef1d5007b657177651043b50648#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,12 +6,10 @@ export PYBUILD_NAME=deeptools</td>
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">%:</span>
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7
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> dh $@ --with python3 --buildsystem=pybuild</span>
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8
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"></span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">#override_dh_auto_test:</span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"># PYTHONPATH=$(CURDIR)/debian/python3-deeptools/usr/lib/python3/dist-packages:/usr/lib/python3/dist-packages nosetests3 -x</span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
12
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<td class="diff-line-num new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">override_dh_auto_test:</span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> #python3 -m unittest discover -v</span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> PYTHONPATH=$(CURDIR) nosetests3 -x -v -s deeptools</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> ifeq (,$(filter nocheck,$(DEB_BUILD_OPTIONS)))</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> PYTHONPATH=$(CURDIR) nosetests3 -x -v -s deeptools</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> endif</span>
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15
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<td class="diff-line-num old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">override_dh_auto_clean:</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> dh_auto_clean</span>
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