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<h3>
Shayan Doust pushed to branch master
at <a href="https://salsa.debian.org/med-team/fast">Debian Med / fast</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/fast/commit/8d54d9d8479743dd9651f4c1c10c1f7662064d24">8d54d9d8</a></strong>
<div>
<span>by Shayan Doust</span>
<i>at 2019-08-12T00:38:07Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">FASTExport.hpp was never installed in the right location
Rectify this. This should be in /usr/include and not /usr/include/FAST
</pre>
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<strong><a href="https://salsa.debian.org/med-team/fast/commit/99fc6181161b6f2d3000d482c5139000d1583099">99fc6181</a></strong>
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<span>by Shayan Doust</span>
<i>at 2019-08-12T00:42:17Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add install dependencies
This list may still be incomplete as I am lacking test suite to test
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<h4>3 changed files:</h4>
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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−
debian/patches/fix_test.patch
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<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/fast/compare/47deac3cc770e195793a065dcf36a0d07c0a8d22...99fc6181161b6f2d3000d482c5139000d1583099#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -30,7 +30,11 @@ Homepage: https://github.com/smistad/FAST</td>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext">Package: fast</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext">Depends: ${shlibs:Depends},</span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext"> ${misc:Depends}</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> opencl-c-headers,</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> ocl-icd-opencl-dev,</span>
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<td class="diff-line-num new new_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> libeigen3-dev,</span>
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<td class="diff-line-num new new_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> qtbase5-dev</span>
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<td class="diff-line-num new_line" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC38" class="line" lang="plaintext">Description: framework for Heterogeneous Medical Image Computing</span>
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<td class="diff-line-num new_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> An open-source cross-platform framework with the main goal of making it</span>
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<td class="diff-line-num new_line" data-linenumber="40" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="plaintext"> easier to do processing and visualization of medical images on</span>
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<li id="82e0bda1ef781bbe11386f41bc18524910c179a4">
<a href="https://salsa.debian.org/med-team/fast/compare/47deac3cc770e195793a065dcf36a0d07c0a8d22...99fc6181161b6f2d3000d482c5139000d1583099#82e0bda1ef781bbe11386f41bc18524910c179a4"><strong>debian/patches/fix_test.patch</strong>
deleted
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="diff"><span class="p">Description: hopefully temporary override to compile for tests</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="diff"> This patch disables the test suite for NeuralNetwork as this is problematic. This needs checking.</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="p">Author: Shayan Doust <hello@shayandoust.me></span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"><span class="p">Last-Update: 2019-08-11</span></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="diff"><span class="p">---</span></span>
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="diff"></span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="diff">Index: fast/source/FAST/Algorithms/NeuralNetwork/CMakeLists.txt</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- fast.orig/source/FAST/Algorithms/NeuralNetwork/CMakeLists.txt 2019-08-11 12:39:37.245215709 +0100</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ fast/source/FAST/Algorithms/NeuralNetwork/CMakeLists.txt 2019-08-11 12:39:37.241215674 +0100</span></span>
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="diff"><span class="p">@@ -16,17 +16,17 @@</span></span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="diff"> fast_add_process_object(ClassificationToText ImageClassificationNetwork.hpp)</span>
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="diff"> fast_add_process_object(SegmentationNetwork SegmentationNetwork.hpp)</span>
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="diff"> fast_add_process_object(ImageToImageNetwork ImageToImageNetwork.hpp)</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-if(FAST_MODULE_Visualization)</span></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- fast_add_test_sources(</span></span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- Tests.cpp</span></span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- ImageClassifierTests.cpp</span></span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- VolumeTests.cpp</span></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- )</span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- if(FAST_MODULE_WholeSlideImaging)</span></span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- fast_add_test_sources(WSITests.cpp)</span></span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- fast_add_example(measureNeuralNetworkPerformance measureNeuralNetworkPerformance.cpp)</span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- endif()</span></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-endif()</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#if(FAST_MODULE_Visualization)</span></span>
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# fast_add_test_sources(</span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# Tests.cpp</span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# ImageClassifierTests.cpp</span></span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# VolumeTests.cpp</span></span>
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# )</span></span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# if(FAST_MODULE_WholeSlideImaging)</span></span>
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# fast_add_test_sources(WSITests.cpp)</span></span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# fast_add_example(measureNeuralNetworkPerformance measureNeuralNetworkPerformance.cpp)</span></span>
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+# endif()</span></span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#endif()</span></span>
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="diff"> #fast_add_example(timingNetwork timingNetwork.cpp)</span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="diff"> #fast_add_example(imageClassification imageClassification.cpp)</span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="diff"> #fast_add_example(leftVentricleSegmentation leftVentricleSegmentation.cpp)</span></pre>
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<a href="https://salsa.debian.org/med-team/fast/compare/47deac3cc770e195793a065dcf36a0d07c0a8d22...99fc6181161b6f2d3000d482c5139000d1583099#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -15,7 +15,12 @@ DEB_HOST_MULTIARCH ?= $(shell dpkg-architecture -qDEB_HOST_MULTIARCH)</td>
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">override_dh_install:</span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext"> dh_install</span>
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17
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext"> find debian/fast -empty -type d -delete</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> mkdir debian/fast/usr/lib debian/fast/usr/lib/$(DEB_HOST_MULTIARCH) debian/fast/usr/lib/fast</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> mkdir debian/fast/usr/lib debian/fast/usr/lib/$(DEB_HOST_MULTIARCH) \</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> debian/fast/usr/lib/fast \</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> debian/fast/usr/include \</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> debian/fast/usr/include/FAST</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> mv debian/fast/usr/fast/lib/* debian/fast/usr/lib/$(DEB_HOST_MULTIARCH)</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> mv debian/fast/usr/fast/kernels debian/fast/usr/lib/fast</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> mv debian/fast/usr/fast/include/FAST/* debian/fast/usr/include/FAST</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> mv debian/fast/usr/fast/include/FASTExport.hpp debian/fast/usr/include</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> rm -r debian/fast/usr/fast</span></pre>
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