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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/abyss">Debian Med / abyss</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/abyss/commit/6e7e1b38578b87f6725285595e73dbce6ef0c0cd">6e7e1b38</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-08-13T10:32:06Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.2.1</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/abyss/commit/365f1aa5f7cb8c53d531162f3cd6221c9f105367">365f1aa5</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-08-13T10:32:09Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.2.1'
Update to upstream version '2.2.1'
with Debian dir a857d15c18397b38f3de419462bb42612310801c</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/abyss/commit/2a10680dd87bf145db986446336155ba00c282c6">2a10680d</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-08-13T10:37:41Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">2.2.1-1
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/abyss/commit/7ab1c9e0f52949e33aefc23731578bec71f5c152">7ab1c9e0</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-08-13T10:38:03Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper-compat 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/abyss/commit/858e1b57d1677df22844932716b385b3c2495634">858e1b57</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-08-13T10:38:08Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.4.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/abyss/commit/46713be2c82d8966c8a4c359765176346bbafeb5">46713be2</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-08-13T10:38:13Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use secure URI in debian/watch.
Fixes lintian: debian-watch-uses-insecure-uri
See https://lintian.debian.org/tags/debian-watch-uses-insecure-uri.html for more details.
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/abyss/commit/716c872077ca0743b7f02eb07df51bac252e7a0d">716c8720</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-08-13T10:38:13Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Set upstream metadata fields: Contact.</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/abyss/commit/acb475098819c0d7d7a34465551fe3df2d4f9804">acb47509</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-08-13T10:40:08Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">release 2.2.1-1
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#938ad75e7620dee9b13d61229cc62f05aacf4459">
Bloom/HashAgnosticCascadingBloom.h
</a>
</li>
<li class="file-stats">
<a href="#23194536db433c3ad8ea32f7c41936751243e8d7">
Bloom/RollingBloomDBGVisitor.h
</a>
</li>
<li class="file-stats">
<a href="#528657d4dd563b35bde5ddc9e8f09e3debf81be5">
BloomDBG/RollingBloomDBG.h
</a>
</li>
<li class="file-stats">
<a href="#cfe499e920e3eba1a8545b3c771d3164a8d1034a">
BloomDBG/RollingHash.h
</a>
</li>
<li class="file-stats">
<a href="#9e9ef9b1b7091080742b7405b4197fc9a6cf2800">
BloomDBG/RollingHashIterator.h
</a>
</li>
<li class="file-stats">
<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
ChangeLog
</a>
</li>
<li class="file-stats">
<a href="#cc89e9bae60f4855d94b92272217e92ebb5bcf52">
Misc/samtobreak.hs
</a>
</li>
<li class="file-stats">
<a href="#5ca61df6fe1e05fd1428aef29756dfd71b6fb5c7">
Unittest/BloomDBG/HashAgnosticCascadingBloomTest.cpp
</a>
</li>
<li class="file-stats">
<a href="#53c5c18861559e737b4981c136014808a2fe5e1e">
Unittest/BloomDBG/RollingBloomDBGTest.cpp
</a>
</li>
<li class="file-stats">
<a href="#40ebc6823f24f296c0cd3fddd6ccda69b74ff2e4">
azure-pipelines.yml
</a>
</li>
<li class="file-stats">
<a href="#cd06d399cbb97ac80091363ace10b558e194af5f">
bin/abyss-pe
</a>
</li>
<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#f5606a935d95a2f20059a7ac1136f47b2edadbf6">
debian/upstream/metadata
</a>
</li>
<li class="file-stats">
<a href="#68ef9f98c01c7eecd4c605cc26048a06f3304b79">
debian/watch
</a>
</li>
<li class="file-stats">
<a href="#54545de904c655f7c6b1ed6e0f6e947540dbf202">
doc/ABYSS.1
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</li>
<li class="file-stats">
<a href="#210a6761e540ac8179e4a92fdffba66759a77e27">
doc/abyss-pe.1
</a>
</li>
<li class="file-stats">
<a href="#58b9c1ec4a434e1b73496c894a35770e972461a5">
doc/abyss-tofastq.1
</a>
</li>
<li class="file-stats">
<a href="#cbbd8af65bcc4c0a765dac52801f71b178112919">
<span class="new-file">
+
vendor/btl_bloomfilter/.clang-format
</span>
</a>
</li>
<li class="file-stats">
<a href="#b03f7f596b7b1bf96596c664a0d3235f3fac32dd">
<span class="new-file">
+
vendor/btl_bloomfilter/.gitignore
</span>
</a>
</li>
<li class="file-stats">
<a href="#ba85440559127e1940ed693583a0f91b6f694814">
<span class="deleted-file">
−
vendor/btl_bloomfilter/COPYING
</span>
</a>
</li>
<li class="file-stats">
<a href="#e3f37eab696b4aa1d5f374ff558e61467f9f2262">
<span class="new-file">
+
vendor/btl_bloomfilter/LICENSE
</span>
</a>
</li>
<li class="file-stats">
<a href="#d2b63be0a8fb089e3c066d6465ec45d15c9ea5e9">
vendor/btl_bloomfilter/Tests/AdHoc/BloomFilterTests.cpp
</a>
</li>
<li class="file-stats">
<a href="#99bac1f2a5a2c65cbb10f170efcd0f09412240b6">
vendor/btl_bloomfilter/azure-pipelines.yml
</a>
</li>
<li class="file-stats">
<a href="#4294b5e82ebfcb245650796703eba040c24264ba">
vendor/btl_bloomfilter/configure.ac
</a>
</li>
<li class="file-stats">
<a href="#4c633b113aaad82a11a9a119cdb18eca389d8c33">
vendor/btl_bloomfilter/swig/test.pl
</a>
</li>
<li class="file-stats">
<a href="#b06bc278883dadcc3aa38d074db7824aa8b83094">
vendor/btl_bloomfilter/swig/testBloom_rolling.pl
</a>
</li>
<li class="file-stats">
<a href="#975bf1721e67148aa7b12f71c9ca1e6c9de5ab8c">
vendor/btl_bloomfilter/swig/writeBloom_rolling.pl
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="938ad75e7620dee9b13d61229cc62f05aacf4459">
<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#938ad75e7620dee9b13d61229cc62f05aacf4459"><strong>Bloom/HashAgnosticCascadingBloom.h</strong></a>
<hr>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -26,6 +26,7 @@</td>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
26
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<td class="diff-line-num new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
26
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC26" class="line" lang="c"><span class="n" style="color: #333;">class</span> <span class="n" style="color: #333;">HashAgnosticCascadingBloom</span></span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
27
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<td class="diff-line-num new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC27" class="line" lang="c"><span class="p">{</span></span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC28" class="line" lang="c"> <span class="nl">public:</span></span>
</pre>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
29
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC29" class="line" lang="c"> <span class="k" style="font-weight: 600;">typedef</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">hash_t</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
29
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<td class="diff-line-num new_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
30
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC30" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/** Default constructor */</span></span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
30
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<td class="diff-line-num new_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
31
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC31" class="line" lang="c"> <span class="n" style="color: #333;">HashAgnosticCascadingBloom</span><span class="p">()</span></span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
31
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<td class="diff-line-num new_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC32" class="line" lang="c"> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">m_k</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -91,7 +92,7 @@ class HashAgnosticCascadingBloom</td>
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<td class="diff-line-num old_line" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
91
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<td class="diff-line-num new_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * Return true if the element with the given hash values</span></span>
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<td class="diff-line-num old_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
92
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<td class="diff-line-num new_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * has count >= levels.</span></span>
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<td class="diff-line-num old_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> */</span></span>
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<td class="diff-line-num old old_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<td class="diff-line-num new_line old" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="c"> <span class="n" style="color: #333;">bool</span> <span class="n" style="color: #333;">contains</span><span class="p">(</span><span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left right">size</span>_t</span><span class="o" style="font-weight: 600;">>&</span> <span class="n" style="color: #333;">hashes</span><span class="p">)</span> <span class="k" style="font-weight: 600;">const</span></span>
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="c"> <span class="n" style="color: #333;">bool</span> <span class="n" style="color: #333;">contains</span><span class="p">(</span><span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;"><span class="idiff left right">hash</span>_t</span><span class="o" style="font-weight: 600;">>&</span> <span class="n" style="color: #333;">hashes</span><span class="p">)</span> <span class="k" style="font-weight: 600;">const</span></span>
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<pre style="margin: 0;"> <span id="LC96" class="line" lang="c"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC97" class="line" lang="c"> <span class="n" style="color: #333;">assert</span><span class="p">(</span><span class="n" style="color: #333;">m_data</span><span class="p">.</span><span class="n" style="color: #333;">back</span><span class="p">()</span> <span class="o" style="font-weight: 600;">!=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">m_data</span><span class="p">.</span><span class="n" style="color: #333;">back</span><span class="p">()</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">contains</span><span class="p">(</span><span class="n" style="color: #333;">hashes</span><span class="p">);</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -101,14 +102,14 @@ class HashAgnosticCascadingBloom</td>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * Return true if the element with the given hash values</span></span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * has count >= levels.</span></span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> */</span></span>
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="c"> <span class="n" style="color: #333;">bool</span> <span class="n" style="color: #333;">contains</span><span class="p">(</span><span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left right">size</span>_t</span> <span class="n" style="color: #333;">hashes</span><span class="p">[])</span> <span class="k" style="font-weight: 600;">const</span></span>
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="c"> <span class="n" style="color: #333;">bool</span> <span class="n" style="color: #333;">contains</span><span class="p">(</span><span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;"><span class="idiff left right">hash</span>_t</span> <span class="n" style="color: #333;">hashes</span><span class="p">[])</span> <span class="k" style="font-weight: 600;">const</span></span>
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106
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="c"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="c"> <span class="n" style="color: #333;">assert</span><span class="p">(</span><span class="n" style="color: #333;">m_data</span><span class="p">.</span><span class="n" style="color: #333;">back</span><span class="p">()</span> <span class="o" style="font-weight: 600;">!=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">m_data</span><span class="p">.</span><span class="n" style="color: #333;">back</span><span class="p">()</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">contains</span><span class="p">(</span><span class="n" style="color: #333;">hashes</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/** Add the object with the specified index to this multiset. */</span></span>
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">insert</span><span class="p">(</span><span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left right">size</span>_t</span><span class="o" style="font-weight: 600;">>&</span> <span class="n" style="color: #333;">hashes</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">insert</span><span class="p">(</span><span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;"><span class="idiff left right">hash</span>_t</span><span class="o" style="font-weight: 600;">>&</span> <span class="n" style="color: #333;">hashes</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="c"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="c"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">m_data</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">i</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="c"> <span class="n" style="color: #333;">assert</span><span class="p">(</span><span class="n" style="color: #333;">m_data</span><span class="p">.</span><span class="n" style="color: #333;">at</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="p">)</span> <span class="o" style="font-weight: 600;">!=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">);</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -120,7 +121,7 @@ class HashAgnosticCascadingBloom</td>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC123" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/** Add the object with the specified index to this multiset. */</span></span>
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<pre style="margin: 0;">-<span id="LC123" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">insert</span><span class="p">(</span><span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left right">size</span>_t</span> <span class="n" style="color: #333;">hashes</span><span class="p">[])</span></span>
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">insert</span><span class="p">(</span><span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;"><span class="idiff left right">hash</span>_t</span> <span class="n" style="color: #333;">hashes</span><span class="p">[])</span></span>
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="c"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="c"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">m_data</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">i</span><span class="p">)</span> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="c"> <span class="n" style="color: #333;">assert</span><span class="p">(</span><span class="n" style="color: #333;">m_data</span><span class="p">.</span><span class="n" style="color: #333;">at</span><span class="p">(</span><span class="n" style="color: #333;">i</span><span class="p">)</span> <span class="o" style="font-weight: 600;">!=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">);</span></span>
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<li id="23194536db433c3ad8ea32f7c41936751243e8d7">
<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#23194536db433c3ad8ea32f7c41936751243e8d7"><strong>Bloom/RollingBloomDBGVisitor.h</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -29,6 +29,7 @@ class RollingBloomDBGVisitor : public DefaultBFSVisitor<GraphT></td>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="c"> <span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">pair</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span><span class="p">,</span> <span class="n" style="color: #333;">BloomFilter</span><span class="o" style="font-weight: 600;">*>></span> <span class="n" style="color: #333;">BloomProperties</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="c"> <span class="k" style="font-weight: 600;">typedef</span> <span class="kr" style="font-weight: 600;">typename</span> <span class="n" style="color: #333;">BloomProperties</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">const_iterator</span> <span class="n" style="color: #333;">BloomPropertiesIt</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="c"> <span class="k" style="font-weight: 600;">typedef</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">hash_t</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/** Constructor */</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="c"> <span class="n" style="color: #333;">template</span><span class="o" style="font-weight: 600;"><</span><span class="kr" style="font-weight: 600;">typename</span> <span class="n" style="color: #333;">VertexSetT</span><span class="o" style="font-weight: 600;">></span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -110,7 +111,7 @@ class RollingBloomDBGVisitor : public DefaultBFSVisitor<GraphT></td>
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="c"> <span class="n" style="color: #333;">m_out</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">","</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">it</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">first</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="c"></span>
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left right">size</span>_t</span> <span class="n" style="color: #333;">hashes</span><span class="p">[</span><span class="n" style="color: #333;">MAX_HASHES</span><span class="p">];</span></span>
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="c"> <span class="n" style="color: #333;"><span class="idiff left right">hash</span>_t</span> <span class="n" style="color: #333;">hashes</span><span class="p">[</span><span class="n" style="color: #333;">MAX_HASHES</span><span class="p">];</span></span>
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114
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<pre style="margin: 0;"> <span id="LC115" class="line" lang="c"> <span class="n" style="color: #333;">v</span><span class="p">.</span><span class="n" style="color: #333;">rollingHash</span><span class="p">().</span><span class="n" style="color: #333;">getHashes</span><span class="p">(</span><span class="n" style="color: #333;">hashes</span><span class="p">);</span></span>
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115
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116
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="c"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="n" style="color: #333;">BloomPropertiesIt</span> <span class="n" style="color: #333;">it</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">m_bloomProperties</span><span class="p">.</span><span class="n" style="color: #333;">begin</span><span class="p">();</span> <span class="n" style="color: #333;">it</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">m_bloomProperties</span><span class="p">.</span><span class="n" style="color: #333;">end</span><span class="p">();</span></span>
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<li id="528657d4dd563b35bde5ddc9e8f09e3debf81be5">
<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#528657d4dd563b35bde5ddc9e8f09e3debf81be5"><strong>BloomDBG/RollingBloomDBG.h</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -205,9 +205,10 @@ struct graph_traits< RollingBloomDBG<BF> > {</td>
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/**</span></span>
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * Identifier for accessing a vertex in the graph.</span></span>
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<pre style="margin: 0;">-<span id="LC208" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * The second member of the pair (std::vector<<span class="idiff left right">size</span>_t>) is</span></span>
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * The second member of the pair (std::vector<<span class="idiff left right">hash</span>_t>) is</span></span>
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<pre style="margin: 0;"> <span id="LC209" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * a set of hash values associated with the k-mer.</span></span>
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<pre style="margin: 0;"> <span id="LC210" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> */</span></span>
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="c"> <span class="k" style="font-weight: 600;">typedef</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">hash_t</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="c"> <span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">RollingBloomDBGVertex</span> <span class="n" style="color: #333;">vertex_descriptor</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC213" class="line" lang="c"> <span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">boost</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">directed_tag</span> <span class="n" style="color: #333;">directed_category</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="c"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">traversal_category</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -223,11 +224,11 @@ struct graph_traits< RollingBloomDBG<BF> > {</td>
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<pre style="margin: 0;"> <span id="LC224" class="line" lang="c"> <span class="k" style="font-weight: 600;">typedef</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="n" style="color: #333;">degree_size_type</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="c"> <span class="c1" style="color: #998; font-style: italic;">// VertexListGraph</span></span>
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<pre style="margin: 0;">-<span id="LC226" class="line" lang="c"> <span class="k" style="font-weight: 600;">typedef</span> <span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left right">size</span>_t</span> <span class="n" style="color: #333;">vertices_size_type</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="c"> <span class="k" style="font-weight: 600;">typedef</span> <span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left right">uint64</span>_t</span> <span class="n" style="color: #333;">vertices_size_type</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC228" class="line" lang="c"> <span class="k" style="font-weight: 600;">typedef</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">vertex_iterator</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC229" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC230" class="line" lang="c"> <span class="c1" style="color: #998; font-style: italic;">// EdgeListGraph</span></span>
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<pre style="margin: 0;">-<span id="LC230" class="line" lang="c"> <span class="k" style="font-weight: 600;">typedef</span> <span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left right">size</span>_t</span> <span class="n" style="color: #333;">edges_size_type</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="c"> <span class="k" style="font-weight: 600;">typedef</span> <span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left right">uint64</span>_t</span> <span class="n" style="color: #333;">edges_size_type</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC232" class="line" lang="c"> <span class="k" style="font-weight: 600;">typedef</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">edge_iterator</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC233" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC234" class="line" lang="c"><span class="c1" style="color: #998; font-style: italic;">// AdjacencyGraph</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="439" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -438,7 +439,8 @@ vertex_exists(</td>
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<pre style="margin: 0;"> <span id="LC439" class="line" lang="c"> <span class="k" style="font-weight: 600;">const</span> <span class="kr" style="font-weight: 600;">typename</span> <span class="n" style="color: #333;">graph_traits</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">RollingBloomDBG</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">BloomT</span><span class="o" style="font-weight: 600;">></span> <span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">vertex_descriptor</span><span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">u</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC440" class="line" lang="c"> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">RollingBloomDBG</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">BloomT</span><span class="o" style="font-weight: 600;">>&</span> <span class="n" style="color: #333;">g</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC441" class="line" lang="c"><span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC441" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">hashes</span><span class="p">[</span><span class="n" style="color: #333;">MAX_HASHES</span><span class="p">];</span></span>
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<pre style="margin: 0;">+<span id="LC442" class="line" lang="c"> <span class="k" style="font-weight: 600;">typedef</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">hash_t</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC443" class="line" lang="c"> <span class="n" style="color: #333;">hash_t</span> <span class="n" style="color: #333;">hashes</span><span class="p">[</span><span class="n" style="color: #333;">MAX_HASHES</span><span class="p">];</span></span>
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<pre style="margin: 0;"> <span id="LC444" class="line" lang="c"> <span class="n" style="color: #333;">u</span><span class="p">.</span><span class="n" style="color: #333;">rollingHash</span><span class="p">().</span><span class="n" style="color: #333;">getHashes</span><span class="p">(</span><span class="n" style="color: #333;">hashes</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC445" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">g</span><span class="p">.</span><span class="n" style="color: #333;">m_bloom</span><span class="p">.</span><span class="n" style="color: #333;">contains</span><span class="p">(</span><span class="n" style="color: #333;">hashes</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC446" class="line" lang="c"><span class="p">}</span></span>
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<li id="cfe499e920e3eba1a8545b3c771d3164a8d1034a">
<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#cfe499e920e3eba1a8545b3c771d3164a8d1034a"><strong>BloomDBG/RollingHash.h</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19,11 +19,13 @@ class RollingHash</td>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="c"><span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="c"><span class="nl">private:</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="c"></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="c"> <span class="k" style="font-weight: 600;">typedef</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">hash_t</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/**</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * Determine the canonical hash value, given hash values for</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * forward and reverse-complement of the same k-mer.</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> */</span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left">uint64_t</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">canonicalHash</span></span><span class="p"><span class="idiff">(</span></span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff">uint64_t</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">hash</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff right">uint64</span>_t</span> <span class="n" style="color: #333;">rcHash</span><span class="p">)</span> <span class="k" style="font-weight: 600;">const</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="c"> <span class="n" style="color: #333;"><span class="idiff left">hash_t</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">canonicalHash</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">hash_t</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">hash</span></span><span class="p"><span class="idiff">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">hash</span>_t</span> <span class="n" style="color: #333;">rcHash</span><span class="p">)</span> <span class="k" style="font-weight: 600;">const</span></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="c"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="n" style="color: #333;">rcHash</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">hash</span><span class="p">)</span> <span class="o" style="font-weight: 600;">?</span> <span class="n" style="color: #333;">rcHash</span> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">hash</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="c"> <span class="p">}</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -136,7 +138,7 @@ public:</td>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> *</span></span>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * @param hashes array for returned hash values</span></span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> */</span></span>
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">getHashes</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left right">size</span>_t</span> <span class="n" style="color: #333;">hashes</span><span class="p">[])</span> <span class="k" style="font-weight: 600;">const</span></span>
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">getHashes</span><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left right">hash</span>_t</span> <span class="n" style="color: #333;">hashes</span><span class="p">[])</span> <span class="k" style="font-weight: 600;">const</span></span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="c"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="c"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">m_numHashes</span><span class="p">;</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">i</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="c"> <span class="n" style="color: #333;">hashes</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">NTE64</span><span class="p">(</span><span class="n" style="color: #333;">m_hash</span><span class="p">,</span> <span class="n" style="color: #333;">m_k</span><span class="p">,</span> <span class="n" style="color: #333;">i</span><span class="p">);</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -208,12 +210,12 @@ private:</td>
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<pre style="margin: 0;"> <span id="LC210" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/** k-mer length */</span></span>
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="n" style="color: #333;">m_k</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/** value of first hash function for current k-mer */</span></span>
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<pre style="margin: 0;">-<span id="LC211" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left right">uint64</span>_t</span> <span class="n" style="color: #333;">m_hash1</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="c"> <span class="n" style="color: #333;"><span class="idiff left right">hash</span>_t</span> <span class="n" style="color: #333;">m_hash1</span><span class="p">;</span></span>
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212
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214
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<pre style="margin: 0;"> <span id="LC214" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/** value of first hash function for current k-mer, after</span></span>
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213
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<pre style="margin: 0;"> <span id="LC215" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * reverse-complementing */</span></span>
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<pre style="margin: 0;">-<span id="LC214" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left right">uint64</span>_t</span> <span class="n" style="color: #333;">m_rcHash1</span><span class="p">;</span></span>
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216
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<pre style="margin: 0;">+<span id="LC216" class="line" lang="c"> <span class="n" style="color: #333;"><span class="idiff left right">hash</span>_t</span> <span class="n" style="color: #333;">m_rcHash1</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/** current canonical hash value */</span></span>
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<pre style="margin: 0;">-<span id="LC216" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left right">uint64</span>_t</span> <span class="n" style="color: #333;">m_hash</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="c"> <span class="n" style="color: #333;"><span class="idiff left right">hash</span>_t</span> <span class="n" style="color: #333;">m_hash</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="c"><span class="p">};</span></span>
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="c"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span></pre>
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<li id="9e9ef9b1b7091080742b7405b4197fc9a6cf2800">
<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#9e9ef9b1b7091080742b7405b4197fc9a6cf2800"><strong>BloomDBG/RollingHashIterator.h</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -98,6 +98,7 @@ private:</td>
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC99" class="line" lang="c"><span class="nl">public:</span></span>
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<pre style="margin: 0;"> <span id="LC100" class="line" lang="c"></span>
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="c"> <span class="k" style="font-weight: 600;">typedef</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">hash_t</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/**</span></span>
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * Default constructor. Creates an iterator pointing to</span></span>
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="c"><span class="cm" style="color: #998; font-style: italic;"> * the end of the iterator range.</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -142,7 +143,7 @@ public:</td>
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="c"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="c"></span>
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/** get reference to hash values for current k-mer */</span></span>
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<pre style="margin: 0;">-<span id="LC145" class="line" lang="c"> <span class="k" style="font-weight: 600;">const</span> <span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left right">size</span>_t</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">operator</span><span class="o" style="font-weight: 600;">*</span><span class="p">()</span> <span class="k" style="font-weight: 600;">const</span></span>
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="c"> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;"><span class="idiff left right">hash</span>_t</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">operator</span><span class="o" style="font-weight: 600;">*</span><span class="p">()</span> <span class="k" style="font-weight: 600;">const</span></span>
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="c"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="c"> <span class="n" style="color: #333;">assert</span><span class="p">(</span><span class="n" style="color: #333;">m_pos</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">m_k</span> <span class="o" style="font-weight: 600;"><=</span> <span class="n" style="color: #333;">m_seq</span><span class="p">.</span><span class="n" style="color: #333;">length</span><span class="p">());</span></span>
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="c"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">m_hashes</span><span class="p">;</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -216,7 +217,7 @@ private:</td>
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<pre style="margin: 0;"> <span id="LC217" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/** number of hash functions */</span></span>
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<pre style="margin: 0;"> <span id="LC218" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="n" style="color: #333;">m_numHashes</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/** hash values */</span></span>
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<pre style="margin: 0;">-<span id="LC219" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left right">size</span>_t</span> <span class="n" style="color: #333;">m_hashes</span><span class="p">[</span><span class="n" style="color: #333;">MAX_HASHES</span><span class="p">];</span></span>
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="c"> <span class="n" style="color: #333;"><span class="idiff left right">hash</span>_t</span> <span class="n" style="color: #333;">m_hashes</span><span class="p">[</span><span class="n" style="color: #333;">MAX_HASHES</span><span class="p">];</span></span>
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/** k-mer size */</span></span>
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<pre style="margin: 0;"> <span id="LC222" class="line" lang="c"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="n" style="color: #333;">m_k</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="c"> <span class="cm" style="color: #998; font-style: italic;">/** internal state for rolling hash */</span></span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">2019-08-12 Johnathan Wong <jowong@bcgsc.ca></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Release version 2.2.1</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Fix abyss-bloom for macOS</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">2019-08-01 Johnathan Wong <jowong@bcgsc.ca></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> * Release version 2.2.0</span>
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<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#cc89e9bae60f4855d94b92272217e92ebb5bcf52"><strong>Misc/samtobreak.hs</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -279,7 +279,7 @@ parseArgs = do</td>
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<pre style="margin: 0;"> <span id="LC279" class="line" lang="haskell"> <span class="kr" style="font-weight: 600;">where</span></span>
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<pre style="margin: 0;"> <span id="LC280" class="line" lang="haskell"> <span class="n" style="color: #333;">help</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">putStr</span> <span class="p">(</span><span class="n" style="color: #333;">usageInfo</span> <span class="n" style="color: #333;">usage</span> <span class="n" style="color: #333;">options</span><span class="p">)</span> <span class="o" style="font-weight: 600;">>></span> <span class="n" style="color: #333;">exitSuccess</span></span>
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<pre style="margin: 0;"> <span id="LC281" class="line" lang="haskell"> <span class="n" style="color: #333;">tryHelp</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"Try 'abyss-samtobreak --help' for more information."</span></span>
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<pre style="margin: 0;">-<span id="LC282" class="line" lang="haskell"> <span class="n" style="color: #333;">version</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"abyss-samtobreak (ABySS) 2.2.<span class="idiff left right">0</span></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span></span>
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="haskell"> <span class="n" style="color: #333;">version</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"abyss-samtobreak (ABySS) 2.2.<span class="idiff left right">1</span></span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span></span>
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<pre style="margin: 0;"> <span id="LC283" class="line" lang="haskell"> <span class="n" style="color: #333;">usage</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">"Usage: samtobreak [OPTION]... [FILE]...</span><span class="se" style="color: #d14;">\n\</span></span>
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<pre style="margin: 0;"> <span id="LC284" class="line" lang="haskell"><span class="se" style="color: #d14;">\</span><span class="s" style="color: #d14;">Calculate contig and scaffold contiguity and correctness metrics.</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span></span>
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<pre style="margin: 0;"> <span id="LC285" class="line" lang="haskell"></span>
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<li id="5ca61df6fe1e05fd1428aef29756dfd71b6fb5c7">
<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#5ca61df6fe1e05fd1428aef29756dfd71b6fb5c7"><strong>Unittest/BloomDBG/HashAgnosticCascadingBloomTest.cpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -25,7 +25,7 @@ TEST(HashAgnosticCascadingBloom, base)</td>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="cpp"> <span class="n" style="color: #333;">RollingHashIterator</span> <span class="n" style="color: #333;">itB</span><span class="p">(</span><span class="n" style="color: #333;">b</span><span class="p">,</span> <span class="n" style="color: #333;">numHashes</span><span class="p">,</span> <span class="n" style="color: #333;">k</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="cpp"> <span class="n" style="color: #333;">RollingHashIterator</span> <span class="n" style="color: #333;">itC</span><span class="p">(</span><span class="n" style="color: #333;">c</span><span class="p">,</span> <span class="n" style="color: #333;">numHashes</span><span class="p">,</span> <span class="n" style="color: #333;">k</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="cpp"> <span class="n" style="color: #333;">RollingHashIterator</span> <span class="n" style="color: #333;">itD</span><span class="p">(</span><span class="n" style="color: #333;">d</span><span class="p">,</span> <span class="n" style="color: #333;">numHashes</span><span class="p">,</span> <span class="n" style="color: #333;">k</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left right">size</span>_t</span> <span class="n" style="color: #333;">hash</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left right">hash</span>_t</span> <span class="n" style="color: #333;">hash</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="cpp"> <span class="n" style="color: #333;">x</span><span class="p">.</span><span class="n" style="color: #333;">insert</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">itA</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="cpp"> <span class="n" style="color: #333;">EXPECT_EQ</span><span class="p">(</span><span class="n" style="color: #333;">x</span><span class="p">.</span><span class="n" style="color: #333;">popcount</span><span class="p">(),</span> <span class="mi" style="color: #099;">0U</span><span class="p">);</span></span>
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<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#53c5c18861559e737b4981c136014808a2fe5e1e"><strong>Unittest/BloomDBG/RollingBloomDBGTest.cpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -11,6 +11,7 @@ using namespace boost;</td>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="cpp"><span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">RollingBloomDBG</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">BloomFilter</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">Graph</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="cpp"><span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">graph_traits</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">Graph</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">GraphTraits</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="cpp"><span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">graph_traits</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">Graph</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">vertex_descriptor</span> <span class="n" style="color: #333;">V</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="cpp"><span class="k" style="font-weight: 600;">typedef</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">hash_t</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;">/** Test fixture for RollingBloomDBG tests. */</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="cpp"><span class="k" style="font-weight: 600;">class</span> <span class="nc" style="color: #458; font-weight: 600;">RollingBloomDBGTest</span> <span class="o" style="font-weight: 600;">:</span> <span class="k" style="font-weight: 600;">public</span> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">testing</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">Test</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -42,7 +43,7 @@ protected:</td>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * complements of these k-mers.</span></span>
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43
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> */</span></span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left right">size</span>_t</span> <span class="n" style="color: #333;">hashes</span><span class="p">[</span><span class="n" style="color: #333;">MAX_HASHES</span><span class="p">];</span></span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left right">hash</span>_t</span> <span class="n" style="color: #333;">hashes</span><span class="p">[</span><span class="n" style="color: #333;">MAX_HASHES</span><span class="p">];</span></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="cpp"> <span class="n" style="color: #333;">RollingHash</span><span class="p">(</span><span class="s" style="color: #d14;">"CGACT"</span><span class="p">,</span> <span class="n" style="color: #333;">m_numHashes</span><span class="p">,</span> <span class="n" style="color: #333;">m_k</span><span class="p">).</span><span class="n" style="color: #333;">getHashes</span><span class="p">(</span><span class="n" style="color: #333;">hashes</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="cpp"> <span class="n" style="color: #333;">m_bloom</span><span class="p">.</span><span class="n" style="color: #333;">insert</span><span class="p">(</span><span class="n" style="color: #333;">hashes</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="cpp"> <span class="n" style="color: #333;">RollingHash</span><span class="p">(</span><span class="s" style="color: #d14;">"TGACT"</span><span class="p">,</span> <span class="n" style="color: #333;">m_numHashes</span><span class="p">,</span> <span class="n" style="color: #333;">m_k</span><span class="p">).</span><span class="n" style="color: #333;">getHashes</span><span class="p">(</span><span class="n" style="color: #333;">hashes</span><span class="p">);</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -156,7 +157,7 @@ TEST_F(RollingBloomDBGTest, pathTraversal)</td>
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156
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157
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">V</span> <span class="n" style="color: #333;">GACTC</span><span class="p">(</span><span class="s" style="color: #d14;">"GACTC"</span><span class="p">,</span> <span class="n" style="color: #333;">RollingHash</span><span class="p">(</span><span class="s" style="color: #d14;">"GACTC"</span><span class="p">,</span> <span class="n" style="color: #333;">m_numHashes</span><span class="p">,</span> <span class="n" style="color: #333;">m_k</span><span class="p">));</span></span>
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157
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">V</span> <span class="n" style="color: #333;">ACTCG</span><span class="p">(</span><span class="s" style="color: #d14;">"ACTCG"</span><span class="p">,</span> <span class="n" style="color: #333;">RollingHash</span><span class="p">(</span><span class="s" style="color: #d14;">"ACTCG"</span><span class="p">,</span> <span class="n" style="color: #333;">m_numHashes</span><span class="p">,</span> <span class="n" style="color: #333;">m_k</span><span class="p">));</span></span>
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158
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="cpp"></span>
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159
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<pre style="margin: 0;">-<span id="LC159" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left right">size</span>_t</span> <span class="n" style="color: #333;">hashes</span><span class="p">[</span><span class="n" style="color: #333;">MAX_HASHES</span><span class="p">];</span></span>
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160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left right">hash</span>_t</span> <span class="n" style="color: #333;">hashes</span><span class="p">[</span><span class="n" style="color: #333;">MAX_HASHES</span><span class="p">];</span></span>
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160
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<pre style="margin: 0;"> <span id="LC161" class="line" lang="cpp"> <span class="n" style="color: #333;">CGACT</span><span class="p">.</span><span class="n" style="color: #333;">rollingHash</span><span class="p">().</span><span class="n" style="color: #333;">getHashes</span><span class="p">(</span><span class="n" style="color: #333;">hashes</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="cpp"> <span class="n" style="color: #333;">bloom</span><span class="p">.</span><span class="n" style="color: #333;">insert</span><span class="p">(</span><span class="n" style="color: #333;">hashes</span><span class="p">);</span></span>
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162
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="cpp"> <span class="n" style="color: #333;">GACTC</span><span class="p">.</span><span class="n" style="color: #333;">rollingHash</span><span class="p">().</span><span class="n" style="color: #333;">getHashes</span><span class="p">(</span><span class="n" style="color: #333;">hashes</span><span class="p">);</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -268,7 +269,7 @@ protected:</td>
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<pre style="margin: 0;"> <span id="LC269" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * any additional edges in the graph.</span></span>
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<pre style="margin: 0;"> <span id="LC270" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> */</span></span>
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<pre style="margin: 0;"> <span id="LC271" class="line" lang="cpp"></span>
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271
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<pre style="margin: 0;">-<span id="LC271" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;"><span class="idiff left right">size</span>_t</span> <span class="n" style="color: #333;">hashes</span><span class="p">[</span><span class="n" style="color: #333;">MAX_HASHES</span><span class="p">];</span></span>
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left right">hash</span>_t</span> <span class="n" style="color: #333;">hashes</span><span class="p">[</span><span class="n" style="color: #333;">MAX_HASHES</span><span class="p">];</span></span>
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272
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<pre style="margin: 0;"> <span id="LC273" class="line" lang="cpp"> <span class="n" style="color: #333;">RollingHash</span><span class="p">(</span><span class="s" style="color: #d14;">"CGACT"</span><span class="p">,</span> <span class="n" style="color: #333;">m_numHashes</span><span class="p">,</span> <span class="n" style="color: #333;">m_k</span><span class="p">).</span><span class="n" style="color: #333;">getHashes</span><span class="p">(</span><span class="n" style="color: #333;">hashes</span><span class="p">);</span></span>
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273
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<pre style="margin: 0;"> <span id="LC274" class="line" lang="cpp"> <span class="n" style="color: #333;">m_bloom</span><span class="p">.</span><span class="n" style="color: #333;">insert</span><span class="p">(</span><span class="n" style="color: #333;">hashes</span><span class="p">);</span></span>
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274
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<pre style="margin: 0;"> <span id="LC275" class="line" lang="cpp"> <span class="n" style="color: #333;">RollingHash</span><span class="p">(</span><span class="s" style="color: #d14;">"TGACT"</span><span class="p">,</span> <span class="n" style="color: #333;">m_numHashes</span><span class="p">,</span> <span class="n" style="color: #333;">m_k</span><span class="p">).</span><span class="n" style="color: #333;">getHashes</span><span class="p">(</span><span class="n" style="color: #333;">hashes</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="yaml"><span class="na" style="color: #008080;">jobs</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="pi">-</span> <span class="na" style="color: #008080;">job</span><span class="pi">:</span> <span class="s" style="color: #d14;">linux_gcc8_32bit</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="na" style="color: #008080;">pool</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="na" style="color: #008080;">vmImage</span><span class="pi">:</span> <span class="s" style="color: #d14;">Ubuntu 16.04</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="yaml"> <span class="na" style="color: #008080;">steps</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">script</span><span class="pi">:</span> <span class="pi">|</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="yaml"> <span class="no" style="color: #008080;">sudo apt-get update -qq</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="yaml"> <span class="no" style="color: #008080;">sudo apt-get install -qq software-properties-common</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="yaml"> <span class="no" style="color: #008080;">sudo add-apt-repository -y ppa:ubuntu-toolchain-r/test</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="yaml"> <span class="no" style="color: #008080;">sudo apt-get update -qq</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="yaml"> <span class="no" style="color: #008080;">sudo apt-get install -qq autoconf automake gcc g++ libboost-dev libgtest-dev libopenmpi-dev libsparsehash-dev make pandoc</span></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="yaml"> <span class="na" style="color: #008080;">displayName</span><span class="pi">:</span> <span class="s" style="color: #d14;">Install common</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">script</span><span class="pi">:</span> <span class="s" style="color: #d14;">sudo apt-get install -qq gcc-8 g++-8</span></span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="yaml"> <span class="na" style="color: #008080;">displayName</span><span class="pi">:</span> <span class="s" style="color: #d14;">Install gcc-8</span></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">script</span><span class="pi">:</span> <span class="s" style="color: #d14;">sudo apt-get install gcc-8-multilib g++-8-multilib</span></span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="yaml"> <span class="na" style="color: #008080;">displayName</span><span class="pi">:</span> <span class="s" style="color: #d14;">Install 32-bit compilation support</span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">script</span><span class="pi">:</span> <span class="pi">|</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="yaml"> <span class="no" style="color: #008080;">./autogen.sh</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="yaml"> <span class="no" style="color: #008080;">./configure CC=gcc-8 CXX=g++-8 --build=i686-linux-gnu "CFLAGS=-m32" "CXXFLAGS=-m32" "LDFLAGS=-m32" --with-mpi=/usr/lib/openmpi</span></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="yaml"> <span class="no" style="color: #008080;">make -j12 distcheck</span></span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="yaml"> <span class="na" style="color: #008080;">displayName</span><span class="pi">:</span> <span class="s" style="color: #d14;">Compiling ABySS with gcc-8</span></span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="yaml"></span>
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2
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="yaml"><span class="pi">-</span> <span class="na" style="color: #008080;">job</span><span class="pi">:</span> <span class="s" style="color: #d14;">linux_clang6</span></span>
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3
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="yaml"> <span class="na" style="color: #008080;">pool</span><span class="pi">:</span></span>
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4
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25
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="yaml"> <span class="na" style="color: #008080;">vmImage</span><span class="pi">:</span> <span class="s" style="color: #d14;">Ubuntu 16.04</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -118,3 +139,19 @@ jobs:</td>
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="yaml"> <span class="na" style="color: #008080;">displayName</span><span class="pi">:</span> <span class="s" style="color: #d14;">Install clang-format</span></span>
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<td class="diff-line-num old_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">script</span><span class="pi">:</span> <span class="s" style="color: #d14;">make clang-format</span></span>
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141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="yaml"> <span class="na" style="color: #008080;">displayName</span><span class="pi">:</span> <span class="s" style="color: #d14;">Run clang-format</span></span>
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="yaml"></span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="yaml"><span class="pi">-</span> <span class="na" style="color: #008080;">job</span><span class="pi">:</span> <span class="s" style="color: #d14;">macOS_gcc8</span></span>
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144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="yaml"> <span class="na" style="color: #008080;">pool</span><span class="pi">:</span></span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="yaml"> <span class="na" style="color: #008080;">vmImage</span><span class="pi">:</span> <span class="s" style="color: #d14;">macOS-10.14</span></span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="yaml"> <span class="na" style="color: #008080;">steps</span><span class="pi">:</span></span>
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147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">script</span><span class="pi">:</span> <span class="pi">|</span></span>
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148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="yaml"> <span class="no" style="color: #008080;">brew update</span></span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="yaml"> <span class="no" style="color: #008080;">brew install automake boost@1.70 openmpi google-sparsehash make pandoc ghc</span></span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="yaml"> <span class="na" style="color: #008080;">displayName</span><span class="pi">:</span> <span class="s" style="color: #d14;">Install common</span></span>
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151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">script</span><span class="pi">:</span> <span class="s" style="color: #d14;">brew install gcc@8</span></span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="yaml"> <span class="na" style="color: #008080;">displayName</span><span class="pi">:</span> <span class="s" style="color: #d14;">Install gcc</span></span>
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153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">script</span><span class="pi">:</span> <span class="pi">|</span></span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="yaml"> <span class="no" style="color: #008080;">./autogen.sh</span></span>
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155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="yaml"> <span class="no" style="color: #008080;">./configure CC=gcc-8 CXX=g++-8 --with-boost=/usr/local/Cellar/boost/1.70.0/include/ --with-mpi=/usr/local/Cellar/open-mpi/4.0.1_2/ CPPFLAGS=-I/usr/local/Cellar/google-sparsehash/2.0.3/include/</span></span>
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156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="yaml"> <span class="no" style="color: #008080;">make -j12 distcheck</span></span>
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157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="yaml"> <span class="na" style="color: #008080;">displayName</span><span class="pi">:</span> <span class="s" style="color: #d14;">Compiling ABySS with gcc 8</span></span></pre>
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<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#cd06d399cbb97ac80091363ace10b558e194af5f"><strong>bin/abyss-pe</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -398,7 +398,7 @@ help:</td>
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398
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<pre style="margin: 0;"> <span id="LC398" class="line" lang="plaintext"> @echo 'Report bugs to https://github.com/bcgsc/abyss/issues or abyss-users@bcgsc.ca.'</span>
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399
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399
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<pre style="margin: 0;"> <span id="LC399" class="line" lang="plaintext"></span>
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400
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<pre style="margin: 0;"> <span id="LC400" class="line" lang="plaintext">version:</span>
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401
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<pre style="margin: 0;">-<span id="LC401" class="line" lang="plaintext"> @echo "abyss-pe (ABySS) 2.2.<span class="idiff left right">0</span>"</span>
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401
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<pre style="margin: 0;">+<span id="LC401" class="line" lang="plaintext"> @echo "abyss-pe (ABySS) 2.2.<span class="idiff left right">1</span>"</span>
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402
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402
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<pre style="margin: 0;"> <span id="LC402" class="line" lang="plaintext"> @echo "Written by Shaun Jackman and Anthony Raymond."</span>
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403
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403
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<pre style="margin: 0;"> <span id="LC403" class="line" lang="plaintext"> @echo</span>
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404
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404
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<pre style="margin: 0;"> <span id="LC404" class="line" lang="plaintext"> @echo "Copyright 2012 Canada's Michael Smith Genome Science Centre"</span>
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<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#87db583be5c13c1f7b3c958b10e03d67b6a2ca06"><strong>configure.ac</strong></a>
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1
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1
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">AC_PREREQ(2.62)</span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">AC_INIT(ABySS, 2.2.<span class="idiff left right">0</span>, abyss-users@bcgsc.ca, abyss,</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">AC_INIT(ABySS, 2.2.<span class="idiff left right">1</span>, abyss-users@bcgsc.ca, abyss,</span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> http://www.bcgsc.ca/platform/bioinfo/software/abyss)</span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">AC_CONFIG_MACRO_DIR([m4])</span>
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<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">abyss (2.2.1-1) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * New upstream release, should fix failing builds on 32-bit architectures.</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> * Remove unused libgtest-dev dependency, as it is unused and may be causing</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> an error on hurd</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> * debhelper-compat 12</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Standards-Version: 4.4.0</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> * Use secure URI in debian/watch.</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * Set upstream metadata fields: Contact.</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> -- Michael R. Crusoe <michael.crusoe@gmail.com> Tue, 13 Aug 2019 12:38:14 +0200</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">abyss (2.2.0-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"> * New upstream.</span>
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<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">12</span></pre>
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<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,17 +4,16 @@ Uploaders: Andreas Tille <tille@debian.org>,</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Michael R. Crusoe <michael.crusoe@gmail.com></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right"> (>= 12~</span>),</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right">-compat (= 12</span>),</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> python-markdown,</span>
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9
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9
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> libboost-graph-dev,</span>
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10
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10
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> libopenmpi-dev,</span>
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11
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11
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> libsparsehash-dev,</span>
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12
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12
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> libtext-multimarkdown-perl,</span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> libgtest-dev,</span>
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14
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> libsqlite3-dev,</span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"><span class="idiff left right"> </span> pkg-config,</span>
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16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"><span class="idiff left right"> </span> help2man</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">3</span>.0</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"><span class="idiff left right"> </span> pkg-config,</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"><span class="idiff left right"> </span> help2man</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">4</span>.0</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/abyss</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/abyss.git</span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Homepage: http://www.bcgsc.ca/platform/bioinfo/software/abyss</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -27,9 +26,9 @@ Depends: make,</td>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext"> ${perl:Depends},</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> bsdmainutils,</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"># For openmpi error messages:</span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"><span class="idiff left right"> </span> openmpi-common,</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"><span class="idiff left right"> </span> openmpi-common,</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"># for /usr/bin/orted and possibly other MPI components:</span>
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"><span class="idiff left right"> </span> openmpi-bin</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"><span class="idiff left right"> </span> openmpi-bin</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext">Description: de novo, parallel, sequence assembler for short reads</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> ABySS is a de novo, parallel, sequence assembler that is designed for</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> short reads. It may be used to assemble genome or transcriptome</span>
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<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#f5606a935d95a2f20059a7ac1136f47b2edadbf6"><strong>debian/upstream/metadata</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">Name: ABySS</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">Reference:</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> Author: ></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> Jared T. Simpson and Kim Wong and Shaun D. Jackman and</span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> Jacqueline E. Schein and Steven J.M. Jones and İnanç Birol</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> Author: "Jared T. Simpson and Kim Wong and Shaun D. Jackman and Jacqueline E. Schein\</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> \ and Steven J.M. Jones and İnanç Birol\n"</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> Title: "ABySS: A parallel assembler for short read sequence data"</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> Journal: Genome Research</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"> Year: 2009</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -14,9 +13,10 @@ Reference:</td>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> URL: http://genome.cshlp.org/content/19/6/1117</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"> eprint: http://genome.cshlp.org/content/19/6/1117.full.pdf+html</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext">Registry:</span>
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> - Name: bio.tools</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext"> Entry: ABySS</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> - Name: OMICtools</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> Entry: OMICS_00006</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> - Name: SciCrunch</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> Entry: SCR_010709</span></pre>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">- Name: bio.tools</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> Entry: ABySS</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">- Name: OMICtools</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> Entry: OMICS_00006</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">- Name: SciCrunch</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> Entry: SCR_010709</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">Contact: Shaun Jackman <sjackman@gmail.com></span></pre>
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<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#68ef9f98c01c7eecd4c605cc26048a06f3304b79"><strong>debian/watch</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">version=4</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">https://github.com/bcgsc/abyss/releases .*/archive/(\d[\d.-]+)\.(?:tar(?:\.gz|\.bz2)?|tgz)</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"># http://www.bcgsc.ca/downloads/abyss/ abyss-(.+)\.tar\.gz</span></pre>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"># http<span class="idiff left right">s</span>://www.bcgsc.ca/downloads/abyss/ abyss-(.+)\.tar\.gz</span></pre>
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<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#54545de904c655f7c6b1ed6e0f6e947540dbf202"><strong>doc/ABYSS.1</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">.TH ABYSS "1" "2015-May" "ABYSS (ABySS) 2.2.<span class="idiff left right">0</span>" "User Commands"</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">.TH ABYSS "1" "2015-May" "ABYSS (ABySS) 2.2.<span class="idiff left right">1</span>" "User Commands"</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">.SH NAME</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">ABYSS \- assemble short reads into contigs</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">.SH SYNOPSIS</span>
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<li id="210a6761e540ac8179e4a92fdffba66759a77e27">
<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#210a6761e540ac8179e4a92fdffba66759a77e27"><strong>doc/abyss-pe.1</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">.TH abyss-pe "1" "2015-May" "abyss-pe (ABySS) 2.2.<span class="idiff left right">0</span>" "User Commands"</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">.TH abyss-pe "1" "2015-May" "abyss-pe (ABySS) 2.2.<span class="idiff left right">1</span>" "User Commands"</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">.SH NAME</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">abyss-pe - assemble reads into contigs</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">.SH SYNOPSIS</span>
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<li id="58b9c1ec4a434e1b73496c894a35770e972461a5">
<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#58b9c1ec4a434e1b73496c894a35770e972461a5"><strong>doc/abyss-tofastq.1</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">.TH abyss-tofastq "1" "2015-May" "ABySS 2.2.<span class="idiff left right">0</span>" "User Commands"</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">.TH abyss-tofastq "1" "2015-May" "ABySS 2.2.<span class="idiff left right">1</span>" "User Commands"</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">.SH NAME</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">abyss-tofastq \- convert various file formats to FASTQ format</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">.br</span>
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<li id="cbbd8af65bcc4c0a765dac52801f71b178112919">
<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#cbbd8af65bcc4c0a765dac52801f71b178112919"><strong>vendor/btl_bloomfilter/.clang-format</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">BasedOnStyle: Mozilla</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">AlignAfterOpenBracket: AlwaysBreak</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">AlignOperands: true</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">ColumnLimit: 100</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">ContinuationIndentWidth: 4</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">IndentCaseLabels: false</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">IndentWidth: 4</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">TabWidth: 4</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">UseTab: ForIndentation</span></pre>
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<li id="b03f7f596b7b1bf96596c664a0d3235f3fac32dd">
<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#b03f7f596b7b1bf96596c664a0d3235f3fac32dd"><strong>vendor/btl_bloomfilter/.gitignore</strong></a>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">INSTALL</span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">Makefile</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">Makefile.in</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext">Tests/AdHoc/BloomFilterTests</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">Tests/AdHoc/ParallelFilter</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext">Tests/Unit/BloomFilterTests</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">aclocal.m4</span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">autom4te.cache</span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">autoscan-*.log</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext">autoscan.log</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">compile</span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">config.guess</span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext">config.h</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">config.h.in</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">config.status</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">config.sub</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">configure</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">configure.scan</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">depcomp</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">install-sh</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext">missing</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">stamp-h1</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">test-driver</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">*.Po</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">*.Tpo</span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">*.log</span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext">*.o</span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext">*.trs</span></pre>
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<br>
</li>
<li id="ba85440559127e1940ed693583a0f91b6f694814">
<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#ba85440559127e1940ed693583a0f91b6f694814"><strong>vendor/btl_bloomfilter/COPYING</strong>
deleted
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">LICENSE AGREEMENT (ACADEMIC USE)</span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">CAREFULLY READ THE FOLLOWING TERMS AND CONDITIONS. This License Agreement (the “Agreement”) is a legal contract between you, your employer, educational institution or organization (collectively, “You”) and the BC Cancer Agency Branch (“BCCA”) with respect to the license of the [insert name of product], including all associated documentation (collectively, the “Product”). </span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">BCCA is willing to license the Product to You only if You accept the terms and conditions of this Agreement. By clicking on the “I ACCEPT” button, or by copying, downloading, accessing or otherwise using the Product, You automatically agree to be bound by the terms of this Agreement. If You do not wish to be bound by the terms of this Agreement, do not copy, download, access or otherwise use the Product.</span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext">1. AUTHORITY: In the event that You are an educational institution or organization, Your representative who is clicking the “I ACCEPT” button, or otherwise copying, downloading, accessing or using the Product hereby, in their personal capacity, represents and warrants that they possess the legal authority to enter into this Agreement on Your behalf and to bind You to the terms of this Agreement.</span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">2. LICENSE TO USE: BCCA hereby grants to You a personal, non-exclusive, non-transferable, limited license to use the Product solely for internal, non-commercial use for non-profit research or educational purposes only on the terms and conditions contained in this Agreement. The Product may be installed on a maximum of one machine per Qualified User at Your premises only. A copy of the Product installed on a single common machine may be shared for internal use by Qualified Users only. In order to be a “Qualified User”, an individual must be a student, researcher, professor, instructor or staff member of a non-profit educational institution or organization who uses the Product solely for non-profit research or educational purposes.</span>
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<td class="diff-line-num old old_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext">3. RESTRICTIONS: You acknowledge and agree that You shall not, and shall not authorize any third party to:</span>
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<td class="diff-line-num old old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">(a) make copies of the Product, except as provided in Section 2 and except for a single backup copy, and any such copy together with the original must be kept in Your possession or control;</span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext">(b) modify,, adapt, decompile, disassemble, translate into another computer language, create derivative works of, or otherwise reverse engineer the Product, or disclose any trade secrets relating to the Product, except as permitted in Section 5;</span>
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9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">(c) license, sublicense, distribute, sell, lease, transfer, assign, trade, rent or publish the Product or any part thereof and/or copies thereof, to any third party;</span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext">(d) use the Product to process any data other than Your own;</span>
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<td class="diff-line-num old old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">(e) use the Product or any part thereof for any commercial or for-profit purpose or any other purpose other than as permitted in Section 2; or</span>
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext">(f) use, without its express permission, the name of BCCA.</span>
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<td class="diff-line-num old old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext">4. INTELLECTUAL PROPERTY RIGHTS: Subject to Section 5 below, all patents, copyrights, trade secrets, service marks, trademarks and other proprietary rights in or related to the Product and any improvements, modifications and enhancements thereof are and will remain the exclusive property of BCCA or its licensors. You agree that You will not, either during or after the termination of this Agreement, contest or challenge the title to or the intellectual property rights of BCCA or its licensors in the Product or any portion thereof.</span>
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<td class="diff-line-num old old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext">5. OWNERSHIP OF IMPROVEMENTS: In the event that the Product, in the form provided to You, includes source code (the “Source Code”), You are entitled to make improvements, modifications and enhancements to the Source Code (collectively, “Improvements”) which Improvements are to be used by You for non-profit research and educational purposes only and You shall be the owner of those Improvements that You directly make and of all intellectual property rights to such Improvements, subject to the foregoing limits on Your use and distribution of such Improvements. You hereby grant to BCCA a perpetual, non-exclusive, worldwide, fully-paid, irrevocable license to use such Improvements for any purposes whatsoever, and to sublicense such Improvements including the right for third parties to sublicense the same, in perpetuity to the extent such rights are not limited in duration under applicable law, without identifying or seeking Your consent. Notwithstanding the foregoing, You acknowledge that BCCA and its licensors will retain or own all rights in and to any pre-existing code or other technology, content and data that may be incorporated in the Improvements. For greater certainty, this Section applies solely to the Source Code and shall not give You any rights with respect to the object code or any other portion or format of the Product which use, for greater certainty, is limited as set forth in this Agreement including as set out in Section 3.(b) above. You acknowledge and agree that you will provide copies of Improvements to BCCA in such format as reasonably requested by BCCA at any time upon the request of BCCA.</span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext">6. CONFIDENTIALITY: You acknowledge that the Product is and incorporates confidential and proprietary information developed, acquired by or licensed to BCCA. You will take all reasonable precautions necessary to safeguard the confidentiality of the Product, and will not disclose any information about the Product to any other person without BCCA’s prior written consent. You will not allow the removal or defacement of any confidential or proprietary notice placed on the Product. You acknowledge that any breach of this Section 6 will cause irreparable harm to BCCA and its licensors.</span>
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<td class="diff-line-num old old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext">7. NO WARRANTIES: This Product is provided to You by BCCA in order to allow You to obtain access to leading academic research. The Product is provided to you on an “as is” basis without warranty of any kind. No warranty, representation or condition either express or implied, including without limitation, any implied warranty or condition of merchantability, non-infringement, performance, durability or fitness for a particular purpose or use shall apply. BCCA does not warrant that the Product will operate on a continuous or trouble free basis.</span>
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<td class="diff-line-num old old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext">8. LIMITATION OF LIABILITY: To the maximum extent permitted by applicable law, in no event shall the aggregate liability of BCCA to You exceed the amount You have paid to acquire the Product (“Maximum amount”) and where You have not paid any amount for the Product then the Maximum Amount shall be deemed to be CDN$1,000. in no event shall BCCA be liable for any indirect, incidental, consequential, or special damages, including without limitation any damages for lost profits or savings, regardless of whether they have been advised of the possibility of such damage. Except to the extent that the laws of a competent jurisdiction require liabilities beyond and despite these limitations, exclusions and disclaimers, these limitations, exclusions and disclaimers shall apply whether an action, claim or demand arises from a breach of warranty or condition, breach of contract, negligence, strict liability or any other kind of civil or statutory liability connected with or arising from this Agreement. You agree that the foregoing disclaimer of warranties and limitation of liability are fair in light of the nature of the rights granted herein and the amount of fees paid by You in respect of the Product.</span>
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext">9. INDEMNITY: You will indemnify, defend and hold harmless BCCA, its board of directors, staff and agents from and against any and all liability, loss, damage, action, claim or expense (including attorney’s fees and costs at trial and appellate levels) in connection with any claim, suit, action, demand or judgement (collectively, “Claim”) arising out of, connected with, resulting from, or sustained as a result of Your use of the Product or the downloading of the Product, including without limitation, any Claim relating to infringement of BCCA’s intellectual property rights or the intellectual property rights of any third party.</span>
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext">10. SUPPORT AND MAINTENANCE: You acknowledge and agree that, unless and to the extent expressly agreed by BCCA in a separate written document, the Product is provided to You without any support or maintenance from BCCA and, for greater certainty, BCCA shall have no obligation to issue any update or upgrade to any Product.</span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext">11. TERM: This Agreement is effective until terminated. You may terminate this Agreement at any time by ceasing use of the Product and destroying or deleting any copies of the Product. This Agreement will terminate immediately without notice from BCCA if You fail to comply with any provision of this Agreement. BCCA may terminate this Agreement at any time upon notice to you where BCCA determines, in its sole discretion, that any continued use of the Product could infringe the rights of any third parties. Upon termination of this Agreement, and in any event upon BCCA delivering You notice of termination, You shall immediately purge all Products from Your computer system(s), return to BCCA all copies of the Product that are in Your possession or control, and cease any further development of any Improvements. On any termination of this Agreement Sections 1, 4, 6, 7, 8, 9, 13 and 14 shall survive such termination.</span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext">12. GOVERNMENT END USERS: Where any of the Product is used, duplicated or disclosed by or to the United States government or a government contractor or sub contractor, it is provided with RESTRICTED RIGHTS as defined in Title 48 CFR 52.227-19 and is subject to the following: Title 48 CFR 2.101, 52.227-19, 227.7201 through 227.7202-4, FAR 52.227-14, and FAR 52.227-19(c)(1-2) and (6/87), and where applicable, the customary software license, as described in Title 48 CFR 227-7202 with respect to commercial software and commercial software documentation including DFAR 252.227-7013, DFAR 252,227-7014, DFAR 252.227-7015 and DFAR 252.7018, all as applicable.</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext">13. USE OF THE DOWNLOAD SERVICE: You acknowledge and agree that you will be responsible for all costs, charges and taxes (where applicable) arising out of Your use of the Product and the downloading of the Product. You acknowledge that You are responsible for supplying any hardware or software necessary to use the Product pursuant to this Agreement.</span>
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<td class="diff-line-num old old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext">14. GENERAL PROVISIONS:</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext">(a) This Agreement will be governed by the laws of the Province of British Columbia, and the laws of Canada applicable therein, excluding any rules of private international law that lead to the application of the laws of any other jurisdiction. The United Nations Convention on Contracts for the International Sale of Goods (1980) does not apply to this Agreement. The courts of the Province of British Columbia shall have non-exclusive jurisdiction to hear any matter arising in connection with this Agreement.</span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext">(b) USE OF THE PRODUCT IS PROHIBITED IN ANY JURISDICTION WHICH DOES NOT GIVE EFFECT TO THE TERMS OF THIS AGREEMENT.</span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext">(c) You agree that no joint venture, partnership, employment, consulting or agency relationship exists between You and BCCA as a result of this Agreement or Your use of the Product.</span>
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<td class="diff-line-num old old_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext">(d) You hereby consent to Your contact information and any other personally identifiable information that You provide to us being disclosed to and maintained and used by us and our business partners for the purposes of (i) managing and developing our respective businesses and operations; (ii) marketing products and services to You and your staff; and (iii) developing new and enhancing existing products. You further agree that we may provide this information to other persons as required to satisfy any legal requirements and to any person that acquires some or all of the assets of BCCA. Where any of the personally identifiable information that You provide to us is in respect of individuals other than Yourself (such as Your staff) then You represent and warrant to use that You have obtained all necessary consents and authorizations from such individuals in order to comply with this provision. Please see the BCCA website for further information regarding personally identifiable information.</span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext">(e) This Agreement is the entire Agreement between You and BCCA relating to this subject matter. You will not contest the validity of this Agreement merely because it is in electronic form. No modification of this Agreement will be binding, unless in writing and accepted by an authorized representative of each party. </span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext">(f) The provisions of this Agreement are severable in that if any provision in the Agreement is determined to be invalid or unenforceable under any controlling body of law, that will not affect the validity or enforceability of the remaining provisions of the Agreement.</span>
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<td class="diff-line-num old old_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext">(g) You agree to print out or download a copy of this Agreement and retain it for Your records.</span>
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<td class="diff-line-num old old_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext">(h) You consent to the use of the English language in this Agreement.</span>
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<td class="diff-line-num old old_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext">(i) You may not assign this Agreement or any of Your rights or obligations hereunder without BCCA’s prior written consent. BCCA, at its sole discretion may assign this Agreement without notice to You.</span></pre>
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<li id="e3f37eab696b4aa1d5f374ff558e61467f9f2262">
<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#e3f37eab696b4aa1d5f374ff558e61467f9f2262"><strong>vendor/btl_bloomfilter/LICENSE</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext"> GNU GENERAL PUBLIC LICENSE</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"> Version 3, 29 June 2007</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> Everyone is permitted to copy and distribute verbatim copies</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> of this license document, but changing it is not allowed.</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> Preamble</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> The GNU General Public License is a free, copyleft license for</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">software and other kinds of works.</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> The licenses for most software and other practical works are designed</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">to take away your freedom to share and change the works. By contrast,</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext">the GNU General Public License is intended to guarantee your freedom to</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">share and change all versions of a program--to make sure it remains free</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext">software for all its users. We, the Free Software Foundation, use the</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext">GNU General Public License for most of our software; it applies also to</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext">any other work released this way by its authors. You can apply it to</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">your programs, too.</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> When we speak of free software, we are referring to freedom, not</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext">price. Our General Public Licenses are designed to make sure that you</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext">have the freedom to distribute copies of free software (and charge for</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">them if you wish), that you receive source code or can get it if you</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext">want it, that you can change the software or use pieces of it in new</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext">free programs, and that you know you can do these things.</span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"></span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> To protect your rights, we need to prevent others from denying you</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext">these rights or asking you to surrender the rights. Therefore, you have</span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext">certain responsibilities if you distribute copies of the software, or if</span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext">you modify it: responsibilities to respect the freedom of others.</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> For example, if you distribute copies of such a program, whether</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext">gratis or for a fee, you must pass on to the recipients the same</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext">freedoms that you received. You must make sure that they, too, receive</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext">or can get the source code. And you must show them these terms so they</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext">know their rights.</span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext"> Developers that use the GNU GPL protect your rights with two steps:</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext">(1) assert copyright on the software, and (2) offer you this License</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext">giving you legal permission to copy, distribute and/or modify it.</span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> For the developers' and authors' protection, the GPL clearly explains</span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext">that there is no warranty for this free software. For both users' and</span>
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext">authors' sake, the GPL requires that modified versions be marked as</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext">changed, so that their problems will not be attributed erroneously to</span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext">authors of previous versions.</span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> Some devices are designed to deny users access to install or run</span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext">modified versions of the software inside them, although the manufacturer</span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext">can do so. This is fundamentally incompatible with the aim of</span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext">protecting users' freedom to change the software. The systematic</span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext">pattern of such abuse occurs in the area of products for individuals to</span>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext">use, which is precisely where it is most unacceptable. Therefore, we</span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="plaintext">have designed this version of the GPL to prohibit the practice for those</span>
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext">products. If such problems arise substantially in other domains, we</span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="plaintext">stand ready to extend this provision to those domains in future versions</span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext">of the GPL, as needed to protect the freedom of users.</span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> Finally, every program is threatened constantly by software patents.</span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext">States should not allow patents to restrict development and use of</span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext">software on general-purpose computers, but in those that do, we wish to</span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext">avoid the special danger that patents applied to a free program could</span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext">make it effectively proprietary. To prevent this, the GPL assures that</span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext">patents cannot be used to render the program non-free.</span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"></span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext"> The precise terms and conditions for copying, distribution and</span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext">modification follow.</span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="plaintext"></span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="plaintext"> TERMS AND CONDITIONS</span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext"></span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext"> 0. Definitions.</span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext"></span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="plaintext"> "This License" refers to version 3 of the GNU General Public License.</span>
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="plaintext"></span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="plaintext"> "Copyright" also means copyright-like laws that apply to other kinds of</span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext">works, such as semiconductor masks.</span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="plaintext"></span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="plaintext"> "The Program" refers to any copyrightable work licensed under this</span>
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<td class="diff-line-num new new_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="plaintext">License. Each licensee is addressed as "you". "Licensees" and</span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="plaintext">"recipients" may be individuals or organizations.</span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="plaintext"> To "modify" a work means to copy from or adapt all or part of the work</span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext">in a fashion requiring copyright permission, other than the making of an</span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="plaintext">exact copy. The resulting work is called a "modified version" of the</span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="plaintext">earlier work or a work "based on" the earlier work.</span>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="plaintext"></span>
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89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext"> A "covered work" means either the unmodified Program or a work based</span>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="plaintext">on the Program.</span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="plaintext"></span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="plaintext"> To "propagate" a work means to do anything with it that, without</span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="plaintext">permission, would make you directly or secondarily liable for</span>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="plaintext">infringement under applicable copyright law, except executing it on a</span>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext">computer or modifying a private copy. Propagation includes copying,</span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="plaintext">distribution (with or without modification), making available to the</span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="plaintext">public, and in some countries other activities as well.</span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="plaintext"></span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="plaintext"> To "convey" a work means any kind of propagation that enables other</span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext">parties to make or receive copies. Mere interaction with a user through</span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="plaintext">a computer network, with no transfer of a copy, is not conveying.</span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="plaintext"> An interactive user interface displays "Appropriate Legal Notices"</span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="plaintext">to the extent that it includes a convenient and prominently visible</span>
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<td class="diff-line-num new new_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="plaintext">feature that (1) displays an appropriate copyright notice, and (2)</span>
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<td class="diff-line-num new new_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="plaintext">tells the user that there is no warranty for the work (except to the</span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="plaintext">extent that warranties are provided), that licensees may convey the</span>
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<td class="diff-line-num new new_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="plaintext">work under this License, and how to view a copy of this License. If</span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="plaintext">the interface presents a list of user commands or options, such as a</span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="plaintext">menu, a prominent item in the list meets this criterion.</span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="plaintext"></span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="plaintext"> 1. Source Code.</span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="plaintext"> The "source code" for a work means the preferred form of the work</span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="plaintext">for making modifications to it. "Object code" means any non-source</span>
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="plaintext">form of a work.</span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="plaintext"> A "Standard Interface" means an interface that either is an official</span>
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="plaintext">standard defined by a recognized standards body, or, in the case of</span>
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="plaintext">interfaces specified for a particular programming language, one that</span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="plaintext">is widely used among developers working in that language.</span>
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122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="plaintext"> The "System Libraries" of an executable work include anything, other</span>
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="plaintext">than the work as a whole, that (a) is included in the normal form of</span>
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="plaintext">packaging a Major Component, but which is not part of that Major</span>
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="plaintext">Component, and (b) serves only to enable use of the work with that</span>
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="plaintext">Major Component, or to implement a Standard Interface for which an</span>
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="plaintext">implementation is available to the public in source code form. A</span>
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<td class="diff-line-num new new_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="plaintext">"Major Component", in this context, means a major essential component</span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="plaintext">(kernel, window system, and so on) of the specific operating system</span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="plaintext">(if any) on which the executable work runs, or a compiler used to</span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext">produce the work, or an object code interpreter used to run it.</span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="plaintext"> The "Corresponding Source" for a work in object code form means all</span>
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<td class="diff-line-num new new_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="plaintext">the source code needed to generate, install, and (for an executable</span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="plaintext">work) run the object code and to modify the work, including scripts to</span>
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<td class="diff-line-num new new_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="plaintext">control those activities. However, it does not include the work's</span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="plaintext">System Libraries, or general-purpose tools or generally available free</span>
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139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="plaintext">programs which are used unmodified in performing those activities but</span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="plaintext">which are not part of the work. For example, Corresponding Source</span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="plaintext">includes interface definition files associated with source files for</span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="plaintext">the work, and the source code for shared libraries and dynamically</span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="plaintext">linked subprograms that the work is specifically designed to require,</span>
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144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="plaintext">such as by intimate data communication or control flow between those</span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="plaintext">subprograms and other parts of the work.</span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="plaintext"></span>
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147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="plaintext"> The Corresponding Source need not include anything that users</span>
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<td class="diff-line-num new new_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="plaintext">can regenerate automatically from other parts of the Corresponding</span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="plaintext">Source.</span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="plaintext"></span>
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151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="plaintext"> The Corresponding Source for a work in source code form is that</span>
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<td class="diff-line-num new new_line" data-linenumber="152" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="plaintext">same work.</span>
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153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="plaintext"></span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="plaintext"> 2. Basic Permissions.</span>
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155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="plaintext"> All rights granted under this License are granted for the term of</span>
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<td class="diff-line-num new new_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="plaintext">copyright on the Program, and are irrevocable provided the stated</span>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="plaintext">conditions are met. This License explicitly affirms your unlimited</span>
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<td class="diff-line-num new new_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="plaintext">permission to run the unmodified Program. The output from running a</span>
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160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="plaintext">covered work is covered by this License only if the output, given its</span>
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161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="plaintext">content, constitutes a covered work. This License acknowledges your</span>
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<td class="diff-line-num new new_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="plaintext">rights of fair use or other equivalent, as provided by copyright law.</span>
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163
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="plaintext"></span>
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164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="plaintext"> You may make, run and propagate covered works that you do not</span>
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165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="plaintext">convey, without conditions so long as your license otherwise remains</span>
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166
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="plaintext">in force. You may convey covered works to others for the sole purpose</span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="plaintext">of having them make modifications exclusively for you, or provide you</span>
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168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="plaintext">with facilities for running those works, provided that you comply with</span>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="plaintext">the terms of this License in conveying all material for which you do</span>
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170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="plaintext">not control copyright. Those thus making or running the covered works</span>
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171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="plaintext">for you must do so exclusively on your behalf, under your direction</span>
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172
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="plaintext">and control, on terms that prohibit them from making any copies of</span>
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173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="plaintext">your copyrighted material outside their relationship with you.</span>
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174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="plaintext"></span>
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175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="plaintext"> Conveying under any other circumstances is permitted solely under</span>
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<td class="diff-line-num new new_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="plaintext">the conditions stated below. Sublicensing is not allowed; section 10</span>
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<td class="diff-line-num new new_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="plaintext">makes it unnecessary.</span>
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178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="plaintext"> 3. Protecting Users' Legal Rights From Anti-Circumvention Law.</span>
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<td class="diff-line-num new new_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="plaintext"> No covered work shall be deemed part of an effective technological</span>
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<td class="diff-line-num new new_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="plaintext">measure under any applicable law fulfilling obligations under article</span>
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<td class="diff-line-num new new_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
183
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="plaintext">11 of the WIPO copyright treaty adopted on 20 December 1996, or</span>
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<td class="diff-line-num new new_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="plaintext">similar laws prohibiting or restricting circumvention of such</span>
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185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="plaintext">measures.</span>
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186
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<pre style="margin: 0;">+<span id="LC186" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
187
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<pre style="margin: 0;">+<span id="LC187" class="line" lang="plaintext"> When you convey a covered work, you waive any legal power to forbid</span>
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<td class="diff-line-num new new_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
188
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="plaintext">circumvention of technological measures to the extent such circumvention</span>
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<td class="diff-line-num new new_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
189
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="plaintext">is effected by exercising rights under this License with respect to</span>
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190
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="plaintext">the covered work, and you disclaim any intention to limit operation or</span>
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<td class="diff-line-num new new_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="plaintext">modification of the work as a means of enforcing, against the work's</span>
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<td class="diff-line-num new new_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
192
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="plaintext">users, your or third parties' legal rights to forbid circumvention of</span>
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<td class="diff-line-num new new_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
193
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="plaintext">technological measures.</span>
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194
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="plaintext"></span>
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195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="plaintext"> 4. Conveying Verbatim Copies.</span>
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196
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="plaintext"></span>
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197
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="plaintext"> You may convey verbatim copies of the Program's source code as you</span>
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198
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="plaintext">receive it, in any medium, provided that you conspicuously and</span>
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<td class="diff-line-num new new_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
199
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="plaintext">appropriately publish on each copy an appropriate copyright notice;</span>
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200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="plaintext">keep intact all notices stating that this License and any</span>
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201
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="plaintext">non-permissive terms added in accord with section 7 apply to the code;</span>
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202
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="plaintext">keep intact all notices of the absence of any warranty; and give all</span>
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203
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="plaintext">recipients a copy of this License along with the Program.</span>
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204
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
205
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<pre style="margin: 0;">+<span id="LC205" class="line" lang="plaintext"> You may charge any price or no price for each copy that you convey,</span>
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="plaintext">and you may offer support or warranty protection for a fee.</span>
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="plaintext"> 5. Conveying Modified Source Versions.</span>
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209
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="plaintext"></span>
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210
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="plaintext"> You may convey a work based on the Program, or the modifications to</span>
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211
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="plaintext">produce it from the Program, in the form of source code under the</span>
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="plaintext">terms of section 4, provided that you also meet all of these conditions:</span>
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="plaintext"> a) The work must carry prominent notices stating that you modified</span>
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215
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<pre style="margin: 0;">+<span id="LC215" class="line" lang="plaintext"> it, and giving a relevant date.</span>
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<pre style="margin: 0;">+<span id="LC216" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="plaintext"> b) The work must carry prominent notices stating that it is</span>
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="plaintext"> released under this License and any conditions added under section</span>
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="plaintext"> 7. This requirement modifies the requirement in section 4 to</span>
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="plaintext"> "keep intact all notices".</span>
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="plaintext"> c) You must license the entire work, as a whole, under this</span>
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="plaintext"> License to anyone who comes into possession of a copy. This</span>
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="plaintext"> License will therefore apply, along with any applicable section 7</span>
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="plaintext"> additional terms, to the whole of the work, and all its parts,</span>
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="plaintext"> regardless of how they are packaged. This License gives no</span>
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="plaintext"> permission to license the work in any other way, but it does not</span>
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="plaintext"> invalidate such permission if you have separately received it.</span>
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="plaintext"> d) If the work has interactive user interfaces, each must display</span>
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="plaintext"> Appropriate Legal Notices; however, if the Program has interactive</span>
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<pre style="margin: 0;">+<span id="LC232" class="line" lang="plaintext"> interfaces that do not display Appropriate Legal Notices, your</span>
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<pre style="margin: 0;">+<span id="LC233" class="line" lang="plaintext"> work need not make them do so.</span>
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<pre style="margin: 0;">+<span id="LC234" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC235" class="line" lang="plaintext"> A compilation of a covered work with other separate and independent</span>
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236
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="plaintext">works, which are not by their nature extensions of the covered work,</span>
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237
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="plaintext">and which are not combined with it such as to form a larger program,</span>
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238
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<pre style="margin: 0;">+<span id="LC238" class="line" lang="plaintext">in or on a volume of a storage or distribution medium, is called an</span>
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239
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="plaintext">"aggregate" if the compilation and its resulting copyright are not</span>
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240
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="plaintext">used to limit the access or legal rights of the compilation's users</span>
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241
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="plaintext">beyond what the individual works permit. Inclusion of a covered work</span>
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242
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="plaintext">in an aggregate does not cause this License to apply to the other</span>
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="plaintext">parts of the aggregate.</span>
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<pre style="margin: 0;">+<span id="LC244" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC245" class="line" lang="plaintext"> 6. Conveying Non-Source Forms.</span>
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<pre style="margin: 0;">+<span id="LC246" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC247" class="line" lang="plaintext"> You may convey a covered work in object code form under the terms</span>
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<pre style="margin: 0;">+<span id="LC248" class="line" lang="plaintext">of sections 4 and 5, provided that you also convey the</span>
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<pre style="margin: 0;">+<span id="LC249" class="line" lang="plaintext">machine-readable Corresponding Source under the terms of this License,</span>
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<pre style="margin: 0;">+<span id="LC250" class="line" lang="plaintext">in one of these ways:</span>
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<pre style="margin: 0;">+<span id="LC251" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC252" class="line" lang="plaintext"> a) Convey the object code in, or embodied in, a physical product</span>
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<pre style="margin: 0;">+<span id="LC253" class="line" lang="plaintext"> (including a physical distribution medium), accompanied by the</span>
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<pre style="margin: 0;">+<span id="LC254" class="line" lang="plaintext"> Corresponding Source fixed on a durable physical medium</span>
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<pre style="margin: 0;">+<span id="LC255" class="line" lang="plaintext"> customarily used for software interchange.</span>
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<pre style="margin: 0;">+<span id="LC256" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC257" class="line" lang="plaintext"> b) Convey the object code in, or embodied in, a physical product</span>
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<td class="diff-line-num new new_line" data-linenumber="258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
258
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<pre style="margin: 0;">+<span id="LC258" class="line" lang="plaintext"> (including a physical distribution medium), accompanied by a</span>
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<td class="diff-line-num new new_line" data-linenumber="259" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
259
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<pre style="margin: 0;">+<span id="LC259" class="line" lang="plaintext"> written offer, valid for at least three years and valid for as</span>
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260
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<pre style="margin: 0;">+<span id="LC260" class="line" lang="plaintext"> long as you offer spare parts or customer support for that product</span>
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<td class="diff-line-num new new_line" data-linenumber="261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
261
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<pre style="margin: 0;">+<span id="LC261" class="line" lang="plaintext"> model, to give anyone who possesses the object code either (1) a</span>
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<td class="diff-line-num new new_line" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
262
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<pre style="margin: 0;">+<span id="LC262" class="line" lang="plaintext"> copy of the Corresponding Source for all the software in the</span>
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<td class="diff-line-num new new_line" data-linenumber="263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
263
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<pre style="margin: 0;">+<span id="LC263" class="line" lang="plaintext"> product that is covered by this License, on a durable physical</span>
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<td class="diff-line-num new new_line" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
264
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<pre style="margin: 0;">+<span id="LC264" class="line" lang="plaintext"> medium customarily used for software interchange, for a price no</span>
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<td class="diff-line-num new new_line" data-linenumber="265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
265
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<pre style="margin: 0;">+<span id="LC265" class="line" lang="plaintext"> more than your reasonable cost of physically performing this</span>
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266
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<pre style="margin: 0;">+<span id="LC266" class="line" lang="plaintext"> conveying of source, or (2) access to copy the</span>
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267
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<pre style="margin: 0;">+<span id="LC267" class="line" lang="plaintext"> Corresponding Source from a network server at no charge.</span>
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268
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<pre style="margin: 0;">+<span id="LC268" class="line" lang="plaintext"></span>
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269
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<pre style="margin: 0;">+<span id="LC269" class="line" lang="plaintext"> c) Convey individual copies of the object code with a copy of the</span>
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270
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="plaintext"> written offer to provide the Corresponding Source. This</span>
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271
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<pre style="margin: 0;">+<span id="LC271" class="line" lang="plaintext"> alternative is allowed only occasionally and noncommercially, and</span>
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272
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="plaintext"> only if you received the object code with such an offer, in accord</span>
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273
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="plaintext"> with subsection 6b.</span>
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274
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="plaintext"></span>
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275
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="plaintext"> d) Convey the object code by offering access from a designated</span>
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<td class="diff-line-num new new_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
276
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="plaintext"> place (gratis or for a charge), and offer equivalent access to the</span>
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<td class="diff-line-num new new_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
277
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="plaintext"> Corresponding Source in the same way through the same place at no</span>
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<td class="diff-line-num new new_line" data-linenumber="278" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
278
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="plaintext"> further charge. You need not require recipients to copy the</span>
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<td class="diff-line-num new new_line" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
279
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="plaintext"> Corresponding Source along with the object code. If the place to</span>
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<td class="diff-line-num new new_line" data-linenumber="280" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
280
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="plaintext"> copy the object code is a network server, the Corresponding Source</span>
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<td class="diff-line-num new new_line" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
281
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<pre style="margin: 0;">+<span id="LC281" class="line" lang="plaintext"> may be on a different server (operated by you or a third party)</span>
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<td class="diff-line-num new new_line" data-linenumber="282" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
282
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="plaintext"> that supports equivalent copying facilities, provided you maintain</span>
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<td class="diff-line-num new new_line" data-linenumber="283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC283" class="line" lang="plaintext"> clear directions next to the object code saying where to find the</span>
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284
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<pre style="margin: 0;">+<span id="LC284" class="line" lang="plaintext"> Corresponding Source. Regardless of what server hosts the</span>
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285
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<pre style="margin: 0;">+<span id="LC285" class="line" lang="plaintext"> Corresponding Source, you remain obligated to ensure that it is</span>
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286
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<pre style="margin: 0;">+<span id="LC286" class="line" lang="plaintext"> available for as long as needed to satisfy these requirements.</span>
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287
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<pre style="margin: 0;">+<span id="LC287" class="line" lang="plaintext"></span>
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288
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<pre style="margin: 0;">+<span id="LC288" class="line" lang="plaintext"> e) Convey the object code using peer-to-peer transmission, provided</span>
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289
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="plaintext"> you inform other peers where the object code and Corresponding</span>
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290
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<pre style="margin: 0;">+<span id="LC290" class="line" lang="plaintext"> Source of the work are being offered to the general public at no</span>
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291
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<pre style="margin: 0;">+<span id="LC291" class="line" lang="plaintext"> charge under subsection 6d.</span>
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292
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<pre style="margin: 0;">+<span id="LC292" class="line" lang="plaintext"></span>
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293
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<pre style="margin: 0;">+<span id="LC293" class="line" lang="plaintext"> A separable portion of the object code, whose source code is excluded</span>
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294
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<pre style="margin: 0;">+<span id="LC294" class="line" lang="plaintext">from the Corresponding Source as a System Library, need not be</span>
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295
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<pre style="margin: 0;">+<span id="LC295" class="line" lang="plaintext">included in conveying the object code work.</span>
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296
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<pre style="margin: 0;">+<span id="LC296" class="line" lang="plaintext"></span>
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297
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<pre style="margin: 0;">+<span id="LC297" class="line" lang="plaintext"> A "User Product" is either (1) a "consumer product", which means any</span>
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298
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<pre style="margin: 0;">+<span id="LC298" class="line" lang="plaintext">tangible personal property which is normally used for personal, family,</span>
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299
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<pre style="margin: 0;">+<span id="LC299" class="line" lang="plaintext">or household purposes, or (2) anything designed or sold for incorporation</span>
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300
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<pre style="margin: 0;">+<span id="LC300" class="line" lang="plaintext">into a dwelling. In determining whether a product is a consumer product,</span>
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301
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<pre style="margin: 0;">+<span id="LC301" class="line" lang="plaintext">doubtful cases shall be resolved in favor of coverage. For a particular</span>
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302
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<pre style="margin: 0;">+<span id="LC302" class="line" lang="plaintext">product received by a particular user, "normally used" refers to a</span>
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303
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<pre style="margin: 0;">+<span id="LC303" class="line" lang="plaintext">typical or common use of that class of product, regardless of the status</span>
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304
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<pre style="margin: 0;">+<span id="LC304" class="line" lang="plaintext">of the particular user or of the way in which the particular user</span>
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<td class="diff-line-num new new_line" data-linenumber="305" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
305
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<pre style="margin: 0;">+<span id="LC305" class="line" lang="plaintext">actually uses, or expects or is expected to use, the product. A product</span>
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<td class="diff-line-num new new_line" data-linenumber="306" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
306
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<pre style="margin: 0;">+<span id="LC306" class="line" lang="plaintext">is a consumer product regardless of whether the product has substantial</span>
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<td class="diff-line-num new new_line" data-linenumber="307" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
307
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<pre style="margin: 0;">+<span id="LC307" class="line" lang="plaintext">commercial, industrial or non-consumer uses, unless such uses represent</span>
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<td class="diff-line-num new new_line" data-linenumber="308" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
308
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<pre style="margin: 0;">+<span id="LC308" class="line" lang="plaintext">the only significant mode of use of the product.</span>
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<td class="diff-line-num new new_line" data-linenumber="309" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
309
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<pre style="margin: 0;">+<span id="LC309" class="line" lang="plaintext"></span>
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310
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<pre style="margin: 0;">+<span id="LC310" class="line" lang="plaintext"> "Installation Information" for a User Product means any methods,</span>
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311
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<pre style="margin: 0;">+<span id="LC311" class="line" lang="plaintext">procedures, authorization keys, or other information required to install</span>
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312
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<pre style="margin: 0;">+<span id="LC312" class="line" lang="plaintext">and execute modified versions of a covered work in that User Product from</span>
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313
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<pre style="margin: 0;">+<span id="LC313" class="line" lang="plaintext">a modified version of its Corresponding Source. The information must</span>
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314
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<pre style="margin: 0;">+<span id="LC314" class="line" lang="plaintext">suffice to ensure that the continued functioning of the modified object</span>
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315
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<pre style="margin: 0;">+<span id="LC315" class="line" lang="plaintext">code is in no case prevented or interfered with solely because</span>
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316
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<pre style="margin: 0;">+<span id="LC316" class="line" lang="plaintext">modification has been made.</span>
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317
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<pre style="margin: 0;">+<span id="LC317" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="318" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
318
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<pre style="margin: 0;">+<span id="LC318" class="line" lang="plaintext"> If you convey an object code work under this section in, or with, or</span>
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319
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<pre style="margin: 0;">+<span id="LC319" class="line" lang="plaintext">specifically for use in, a User Product, and the conveying occurs as</span>
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320
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<pre style="margin: 0;">+<span id="LC320" class="line" lang="plaintext">part of a transaction in which the right of possession and use of the</span>
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321
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<pre style="margin: 0;">+<span id="LC321" class="line" lang="plaintext">User Product is transferred to the recipient in perpetuity or for a</span>
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322
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<pre style="margin: 0;">+<span id="LC322" class="line" lang="plaintext">fixed term (regardless of how the transaction is characterized), the</span>
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323
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<pre style="margin: 0;">+<span id="LC323" class="line" lang="plaintext">Corresponding Source conveyed under this section must be accompanied</span>
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324
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<pre style="margin: 0;">+<span id="LC324" class="line" lang="plaintext">by the Installation Information. But this requirement does not apply</span>
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325
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<pre style="margin: 0;">+<span id="LC325" class="line" lang="plaintext">if neither you nor any third party retains the ability to install</span>
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326
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<pre style="margin: 0;">+<span id="LC326" class="line" lang="plaintext">modified object code on the User Product (for example, the work has</span>
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327
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<pre style="margin: 0;">+<span id="LC327" class="line" lang="plaintext">been installed in ROM).</span>
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328
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<pre style="margin: 0;">+<span id="LC328" class="line" lang="plaintext"></span>
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329
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<pre style="margin: 0;">+<span id="LC329" class="line" lang="plaintext"> The requirement to provide Installation Information does not include a</span>
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330
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<pre style="margin: 0;">+<span id="LC330" class="line" lang="plaintext">requirement to continue to provide support service, warranty, or updates</span>
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<td class="diff-line-num new new_line" data-linenumber="331" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
331
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<pre style="margin: 0;">+<span id="LC331" class="line" lang="plaintext">for a work that has been modified or installed by the recipient, or for</span>
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<td class="diff-line-num new new_line" data-linenumber="332" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
332
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<pre style="margin: 0;">+<span id="LC332" class="line" lang="plaintext">the User Product in which it has been modified or installed. Access to a</span>
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<td class="diff-line-num new new_line" data-linenumber="333" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
333
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<pre style="margin: 0;">+<span id="LC333" class="line" lang="plaintext">network may be denied when the modification itself materially and</span>
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<td class="diff-line-num new new_line" data-linenumber="334" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
334
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<pre style="margin: 0;">+<span id="LC334" class="line" lang="plaintext">adversely affects the operation of the network or violates the rules and</span>
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<pre style="margin: 0;">+<span id="LC335" class="line" lang="plaintext">protocols for communication across the network.</span>
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336
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<pre style="margin: 0;">+<span id="LC336" class="line" lang="plaintext"></span>
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337
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<pre style="margin: 0;">+<span id="LC337" class="line" lang="plaintext"> Corresponding Source conveyed, and Installation Information provided,</span>
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338
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<pre style="margin: 0;">+<span id="LC338" class="line" lang="plaintext">in accord with this section must be in a format that is publicly</span>
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339
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<pre style="margin: 0;">+<span id="LC339" class="line" lang="plaintext">documented (and with an implementation available to the public in</span>
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340
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<pre style="margin: 0;">+<span id="LC340" class="line" lang="plaintext">source code form), and must require no special password or key for</span>
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341
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<pre style="margin: 0;">+<span id="LC341" class="line" lang="plaintext">unpacking, reading or copying.</span>
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342
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<pre style="margin: 0;">+<span id="LC342" class="line" lang="plaintext"></span>
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343
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<pre style="margin: 0;">+<span id="LC343" class="line" lang="plaintext"> 7. Additional Terms.</span>
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344
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<pre style="margin: 0;">+<span id="LC344" class="line" lang="plaintext"></span>
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345
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<pre style="margin: 0;">+<span id="LC345" class="line" lang="plaintext"> "Additional permissions" are terms that supplement the terms of this</span>
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346
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<pre style="margin: 0;">+<span id="LC346" class="line" lang="plaintext">License by making exceptions from one or more of its conditions.</span>
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347
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<pre style="margin: 0;">+<span id="LC347" class="line" lang="plaintext">Additional permissions that are applicable to the entire Program shall</span>
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348
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<pre style="margin: 0;">+<span id="LC348" class="line" lang="plaintext">be treated as though they were included in this License, to the extent</span>
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349
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<pre style="margin: 0;">+<span id="LC349" class="line" lang="plaintext">that they are valid under applicable law. If additional permissions</span>
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350
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<pre style="margin: 0;">+<span id="LC350" class="line" lang="plaintext">apply only to part of the Program, that part may be used separately</span>
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351
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<pre style="margin: 0;">+<span id="LC351" class="line" lang="plaintext">under those permissions, but the entire Program remains governed by</span>
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352
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<pre style="margin: 0;">+<span id="LC352" class="line" lang="plaintext">this License without regard to the additional permissions.</span>
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353
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<pre style="margin: 0;">+<span id="LC353" class="line" lang="plaintext"></span>
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354
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<pre style="margin: 0;">+<span id="LC354" class="line" lang="plaintext"> When you convey a copy of a covered work, you may at your option</span>
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355
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<pre style="margin: 0;">+<span id="LC355" class="line" lang="plaintext">remove any additional permissions from that copy, or from any part of</span>
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356
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<pre style="margin: 0;">+<span id="LC356" class="line" lang="plaintext">it. (Additional permissions may be written to require their own</span>
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<pre style="margin: 0;">+<span id="LC357" class="line" lang="plaintext">removal in certain cases when you modify the work.) You may place</span>
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<pre style="margin: 0;">+<span id="LC358" class="line" lang="plaintext">additional permissions on material, added by you to a covered work,</span>
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<pre style="margin: 0;">+<span id="LC359" class="line" lang="plaintext">for which you have or can give appropriate copyright permission.</span>
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<pre style="margin: 0;">+<span id="LC360" class="line" lang="plaintext"></span>
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361
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<pre style="margin: 0;">+<span id="LC361" class="line" lang="plaintext"> Notwithstanding any other provision of this License, for material you</span>
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362
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<pre style="margin: 0;">+<span id="LC362" class="line" lang="plaintext">add to a covered work, you may (if authorized by the copyright holders of</span>
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363
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<pre style="margin: 0;">+<span id="LC363" class="line" lang="plaintext">that material) supplement the terms of this License with terms:</span>
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364
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<pre style="margin: 0;">+<span id="LC364" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="365" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
365
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<pre style="margin: 0;">+<span id="LC365" class="line" lang="plaintext"> a) Disclaiming warranty or limiting liability differently from the</span>
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366
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<pre style="margin: 0;">+<span id="LC366" class="line" lang="plaintext"> terms of sections 15 and 16 of this License; or</span>
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367
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<pre style="margin: 0;">+<span id="LC367" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="368" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
368
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<pre style="margin: 0;">+<span id="LC368" class="line" lang="plaintext"> b) Requiring preservation of specified reasonable legal notices or</span>
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369
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<pre style="margin: 0;">+<span id="LC369" class="line" lang="plaintext"> author attributions in that material or in the Appropriate Legal</span>
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370
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<pre style="margin: 0;">+<span id="LC370" class="line" lang="plaintext"> Notices displayed by works containing it; or</span>
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371
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<pre style="margin: 0;">+<span id="LC371" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="372" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
372
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<pre style="margin: 0;">+<span id="LC372" class="line" lang="plaintext"> c) Prohibiting misrepresentation of the origin of that material, or</span>
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373
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<pre style="margin: 0;">+<span id="LC373" class="line" lang="plaintext"> requiring that modified versions of such material be marked in</span>
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374
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<pre style="margin: 0;">+<span id="LC374" class="line" lang="plaintext"> reasonable ways as different from the original version; or</span>
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375
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<pre style="margin: 0;">+<span id="LC375" class="line" lang="plaintext"></span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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376
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<pre style="margin: 0;">+<span id="LC376" class="line" lang="plaintext"> d) Limiting the use for publicity purposes of names of licensors or</span>
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<td class="diff-line-num new new_line" data-linenumber="377" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
377
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<pre style="margin: 0;">+<span id="LC377" class="line" lang="plaintext"> authors of the material; or</span>
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<td class="diff-line-num new new_line" data-linenumber="378" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
378
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<pre style="margin: 0;">+<span id="LC378" class="line" lang="plaintext"></span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="379" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
379
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<pre style="margin: 0;">+<span id="LC379" class="line" lang="plaintext"> e) Declining to grant rights under trademark law for use of some</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="380" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
380
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<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC380" class="line" lang="plaintext"> trade names, trademarks, or service marks; or</span>
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<td class="diff-line-num new new_line" data-linenumber="381" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
381
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<pre style="margin: 0;">+<span id="LC381" class="line" lang="plaintext"></span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="382" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
382
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<pre style="margin: 0;">+<span id="LC382" class="line" lang="plaintext"> f) Requiring indemnification of licensors and authors of that</span>
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383
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<pre style="margin: 0;">+<span id="LC383" class="line" lang="plaintext"> material by anyone who conveys the material (or modified versions of</span>
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<td class="diff-line-num new new_line" data-linenumber="384" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
384
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<pre style="margin: 0;">+<span id="LC384" class="line" lang="plaintext"> it) with contractual assumptions of liability to the recipient, for</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="385" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
385
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<pre style="margin: 0;">+<span id="LC385" class="line" lang="plaintext"> any liability that these contractual assumptions directly impose on</span>
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<td class="diff-line-num new new_line" data-linenumber="386" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
386
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<pre style="margin: 0;">+<span id="LC386" class="line" lang="plaintext"> those licensors and authors.</span>
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387
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<pre style="margin: 0;">+<span id="LC387" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="388" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
388
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<pre style="margin: 0;">+<span id="LC388" class="line" lang="plaintext"> All other non-permissive additional terms are considered "further</span>
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<td class="diff-line-num new new_line" data-linenumber="389" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
389
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<pre style="margin: 0;">+<span id="LC389" class="line" lang="plaintext">restrictions" within the meaning of section 10. If the Program as you</span>
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<td class="diff-line-num new new_line" data-linenumber="390" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
390
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<pre style="margin: 0;">+<span id="LC390" class="line" lang="plaintext">received it, or any part of it, contains a notice stating that it is</span>
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<td class="diff-line-num new new_line" data-linenumber="391" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
391
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<pre style="margin: 0;">+<span id="LC391" class="line" lang="plaintext">governed by this License along with a term that is a further</span>
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<td class="diff-line-num new new_line" data-linenumber="392" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
392
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<pre style="margin: 0;">+<span id="LC392" class="line" lang="plaintext">restriction, you may remove that term. If a license document contains</span>
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<td class="diff-line-num new new_line" data-linenumber="393" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
393
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<pre style="margin: 0;">+<span id="LC393" class="line" lang="plaintext">a further restriction but permits relicensing or conveying under this</span>
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<td class="diff-line-num new new_line" data-linenumber="394" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
394
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<pre style="margin: 0;">+<span id="LC394" class="line" lang="plaintext">License, you may add to a covered work material governed by the terms</span>
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395
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<pre style="margin: 0;">+<span id="LC395" class="line" lang="plaintext">of that license document, provided that the further restriction does</span>
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396
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<pre style="margin: 0;">+<span id="LC396" class="line" lang="plaintext">not survive such relicensing or conveying.</span>
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397
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<pre style="margin: 0;">+<span id="LC397" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
398
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<pre style="margin: 0;">+<span id="LC398" class="line" lang="plaintext"> If you add terms to a covered work in accord with this section, you</span>
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399
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<pre style="margin: 0;">+<span id="LC399" class="line" lang="plaintext">must place, in the relevant source files, a statement of the</span>
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400
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<pre style="margin: 0;">+<span id="LC400" class="line" lang="plaintext">additional terms that apply to those files, or a notice indicating</span>
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401
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<pre style="margin: 0;">+<span id="LC401" class="line" lang="plaintext">where to find the applicable terms.</span>
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402
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<pre style="margin: 0;">+<span id="LC402" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="403" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
403
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<pre style="margin: 0;">+<span id="LC403" class="line" lang="plaintext"> Additional terms, permissive or non-permissive, may be stated in the</span>
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404
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<pre style="margin: 0;">+<span id="LC404" class="line" lang="plaintext">form of a separately written license, or stated as exceptions;</span>
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405
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<pre style="margin: 0;">+<span id="LC405" class="line" lang="plaintext">the above requirements apply either way.</span>
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406
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<pre style="margin: 0;">+<span id="LC406" class="line" lang="plaintext"></span>
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407
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<pre style="margin: 0;">+<span id="LC407" class="line" lang="plaintext"> 8. Termination.</span>
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408
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<pre style="margin: 0;">+<span id="LC408" class="line" lang="plaintext"></span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="409" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
409
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<pre style="margin: 0;">+<span id="LC409" class="line" lang="plaintext"> You may not propagate or modify a covered work except as expressly</span>
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<td class="diff-line-num new old_line" data-linenumber="0" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="410" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
410
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<pre style="margin: 0;">+<span id="LC410" class="line" lang="plaintext">provided under this License. Any attempt otherwise to propagate or</span>
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<td class="diff-line-num new new_line" data-linenumber="411" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
411
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<pre style="margin: 0;">+<span id="LC411" class="line" lang="plaintext">modify it is void, and will automatically terminate your rights under</span>
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<td class="diff-line-num new new_line" data-linenumber="412" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
412
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<pre style="margin: 0;">+<span id="LC412" class="line" lang="plaintext">this License (including any patent licenses granted under the third</span>
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413
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<pre style="margin: 0;">+<span id="LC413" class="line" lang="plaintext">paragraph of section 11).</span>
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414
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<pre style="margin: 0;">+<span id="LC414" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="415" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
415
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<pre style="margin: 0;">+<span id="LC415" class="line" lang="plaintext"> However, if you cease all violation of this License, then your</span>
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<td class="diff-line-num new new_line" data-linenumber="416" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
416
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<pre style="margin: 0;">+<span id="LC416" class="line" lang="plaintext">license from a particular copyright holder is reinstated (a)</span>
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<td class="diff-line-num new new_line" data-linenumber="417" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
417
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<pre style="margin: 0;">+<span id="LC417" class="line" lang="plaintext">provisionally, unless and until the copyright holder explicitly and</span>
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<td class="diff-line-num new new_line" data-linenumber="418" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
418
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<pre style="margin: 0;">+<span id="LC418" class="line" lang="plaintext">finally terminates your license, and (b) permanently, if the copyright</span>
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<td class="diff-line-num new new_line" data-linenumber="419" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
419
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<pre style="margin: 0;">+<span id="LC419" class="line" lang="plaintext">holder fails to notify you of the violation by some reasonable means</span>
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420
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<pre style="margin: 0;">+<span id="LC420" class="line" lang="plaintext">prior to 60 days after the cessation.</span>
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421
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<pre style="margin: 0;">+<span id="LC421" class="line" lang="plaintext"></span>
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422
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<pre style="margin: 0;">+<span id="LC422" class="line" lang="plaintext"> Moreover, your license from a particular copyright holder is</span>
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423
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<pre style="margin: 0;">+<span id="LC423" class="line" lang="plaintext">reinstated permanently if the copyright holder notifies you of the</span>
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424
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<pre style="margin: 0;">+<span id="LC424" class="line" lang="plaintext">violation by some reasonable means, this is the first time you have</span>
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425
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<pre style="margin: 0;">+<span id="LC425" class="line" lang="plaintext">received notice of violation of this License (for any work) from that</span>
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426
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<pre style="margin: 0;">+<span id="LC426" class="line" lang="plaintext">copyright holder, and you cure the violation prior to 30 days after</span>
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427
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<pre style="margin: 0;">+<span id="LC427" class="line" lang="plaintext">your receipt of the notice.</span>
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428
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<pre style="margin: 0;">+<span id="LC428" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="429" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
429
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<pre style="margin: 0;">+<span id="LC429" class="line" lang="plaintext"> Termination of your rights under this section does not terminate the</span>
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430
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<pre style="margin: 0;">+<span id="LC430" class="line" lang="plaintext">licenses of parties who have received copies or rights from you under</span>
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431
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<pre style="margin: 0;">+<span id="LC431" class="line" lang="plaintext">this License. If your rights have been terminated and not permanently</span>
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432
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<pre style="margin: 0;">+<span id="LC432" class="line" lang="plaintext">reinstated, you do not qualify to receive new licenses for the same</span>
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433
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<pre style="margin: 0;">+<span id="LC433" class="line" lang="plaintext">material under section 10.</span>
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434
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<pre style="margin: 0;">+<span id="LC434" class="line" lang="plaintext"></span>
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435
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<pre style="margin: 0;">+<span id="LC435" class="line" lang="plaintext"> 9. Acceptance Not Required for Having Copies.</span>
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436
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<pre style="margin: 0;">+<span id="LC436" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="437" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
437
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<pre style="margin: 0;">+<span id="LC437" class="line" lang="plaintext"> You are not required to accept this License in order to receive or</span>
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<td class="diff-line-num new new_line" data-linenumber="438" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
438
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<pre style="margin: 0;">+<span id="LC438" class="line" lang="plaintext">run a copy of the Program. Ancillary propagation of a covered work</span>
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439
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<pre style="margin: 0;">+<span id="LC439" class="line" lang="plaintext">occurring solely as a consequence of using peer-to-peer transmission</span>
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440
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<pre style="margin: 0;">+<span id="LC440" class="line" lang="plaintext">to receive a copy likewise does not require acceptance. However,</span>
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441
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<pre style="margin: 0;">+<span id="LC441" class="line" lang="plaintext">nothing other than this License grants you permission to propagate or</span>
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442
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<pre style="margin: 0;">+<span id="LC442" class="line" lang="plaintext">modify any covered work. These actions infringe copyright if you do</span>
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443
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<pre style="margin: 0;">+<span id="LC443" class="line" lang="plaintext">not accept this License. Therefore, by modifying or propagating a</span>
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444
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<pre style="margin: 0;">+<span id="LC444" class="line" lang="plaintext">covered work, you indicate your acceptance of this License to do so.</span>
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445
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<pre style="margin: 0;">+<span id="LC445" class="line" lang="plaintext"></span>
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446
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<pre style="margin: 0;">+<span id="LC446" class="line" lang="plaintext"> 10. Automatic Licensing of Downstream Recipients.</span>
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447
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<pre style="margin: 0;">+<span id="LC447" class="line" lang="plaintext"></span>
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448
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<pre style="margin: 0;">+<span id="LC448" class="line" lang="plaintext"> Each time you convey a covered work, the recipient automatically</span>
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449
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<pre style="margin: 0;">+<span id="LC449" class="line" lang="plaintext">receives a license from the original licensors, to run, modify and</span>
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450
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<pre style="margin: 0;">+<span id="LC450" class="line" lang="plaintext">propagate that work, subject to this License. You are not responsible</span>
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451
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<pre style="margin: 0;">+<span id="LC451" class="line" lang="plaintext">for enforcing compliance by third parties with this License.</span>
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452
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<pre style="margin: 0;">+<span id="LC452" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC453" class="line" lang="plaintext"> An "entity transaction" is a transaction transferring control of an</span>
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<pre style="margin: 0;">+<span id="LC454" class="line" lang="plaintext">organization, or substantially all assets of one, or subdividing an</span>
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455
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<pre style="margin: 0;">+<span id="LC455" class="line" lang="plaintext">organization, or merging organizations. If propagation of a covered</span>
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456
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<pre style="margin: 0;">+<span id="LC456" class="line" lang="plaintext">work results from an entity transaction, each party to that</span>
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457
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<pre style="margin: 0;">+<span id="LC457" class="line" lang="plaintext">transaction who receives a copy of the work also receives whatever</span>
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458
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<pre style="margin: 0;">+<span id="LC458" class="line" lang="plaintext">licenses to the work the party's predecessor in interest had or could</span>
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459
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<pre style="margin: 0;">+<span id="LC459" class="line" lang="plaintext">give under the previous paragraph, plus a right to possession of the</span>
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460
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<pre style="margin: 0;">+<span id="LC460" class="line" lang="plaintext">Corresponding Source of the work from the predecessor in interest, if</span>
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461
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<pre style="margin: 0;">+<span id="LC461" class="line" lang="plaintext">the predecessor has it or can get it with reasonable efforts.</span>
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<pre style="margin: 0;">+<span id="LC462" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC463" class="line" lang="plaintext"> You may not impose any further restrictions on the exercise of the</span>
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<pre style="margin: 0;">+<span id="LC464" class="line" lang="plaintext">rights granted or affirmed under this License. For example, you may</span>
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465
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<pre style="margin: 0;">+<span id="LC465" class="line" lang="plaintext">not impose a license fee, royalty, or other charge for exercise of</span>
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466
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<pre style="margin: 0;">+<span id="LC466" class="line" lang="plaintext">rights granted under this License, and you may not initiate litigation</span>
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467
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<pre style="margin: 0;">+<span id="LC467" class="line" lang="plaintext">(including a cross-claim or counterclaim in a lawsuit) alleging that</span>
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468
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<pre style="margin: 0;">+<span id="LC468" class="line" lang="plaintext">any patent claim is infringed by making, using, selling, offering for</span>
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469
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<pre style="margin: 0;">+<span id="LC469" class="line" lang="plaintext">sale, or importing the Program or any portion of it.</span>
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470
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<pre style="margin: 0;">+<span id="LC470" class="line" lang="plaintext"></span>
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471
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<pre style="margin: 0;">+<span id="LC471" class="line" lang="plaintext"> 11. Patents.</span>
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472
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<pre style="margin: 0;">+<span id="LC472" class="line" lang="plaintext"></span>
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473
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<pre style="margin: 0;">+<span id="LC473" class="line" lang="plaintext"> A "contributor" is a copyright holder who authorizes use under this</span>
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474
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<pre style="margin: 0;">+<span id="LC474" class="line" lang="plaintext">License of the Program or a work on which the Program is based. The</span>
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475
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<pre style="margin: 0;">+<span id="LC475" class="line" lang="plaintext">work thus licensed is called the contributor's "contributor version".</span>
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476
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<pre style="margin: 0;">+<span id="LC476" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="477" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
477
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<pre style="margin: 0;">+<span id="LC477" class="line" lang="plaintext"> A contributor's "essential patent claims" are all patent claims</span>
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478
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<pre style="margin: 0;">+<span id="LC478" class="line" lang="plaintext">owned or controlled by the contributor, whether already acquired or</span>
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479
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<pre style="margin: 0;">+<span id="LC479" class="line" lang="plaintext">hereafter acquired, that would be infringed by some manner, permitted</span>
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480
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<pre style="margin: 0;">+<span id="LC480" class="line" lang="plaintext">by this License, of making, using, or selling its contributor version,</span>
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481
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<pre style="margin: 0;">+<span id="LC481" class="line" lang="plaintext">but do not include claims that would be infringed only as a</span>
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482
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<pre style="margin: 0;">+<span id="LC482" class="line" lang="plaintext">consequence of further modification of the contributor version. For</span>
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483
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<pre style="margin: 0;">+<span id="LC483" class="line" lang="plaintext">purposes of this definition, "control" includes the right to grant</span>
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484
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<pre style="margin: 0;">+<span id="LC484" class="line" lang="plaintext">patent sublicenses in a manner consistent with the requirements of</span>
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485
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<pre style="margin: 0;">+<span id="LC485" class="line" lang="plaintext">this License.</span>
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486
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<pre style="margin: 0;">+<span id="LC486" class="line" lang="plaintext"></span>
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487
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<pre style="margin: 0;">+<span id="LC487" class="line" lang="plaintext"> Each contributor grants you a non-exclusive, worldwide, royalty-free</span>
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488
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<pre style="margin: 0;">+<span id="LC488" class="line" lang="plaintext">patent license under the contributor's essential patent claims, to</span>
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<td class="diff-line-num new new_line" data-linenumber="489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
489
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<pre style="margin: 0;">+<span id="LC489" class="line" lang="plaintext">make, use, sell, offer for sale, import and otherwise run, modify and</span>
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<td class="diff-line-num new new_line" data-linenumber="490" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
490
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<pre style="margin: 0;">+<span id="LC490" class="line" lang="plaintext">propagate the contents of its contributor version.</span>
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491
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<pre style="margin: 0;">+<span id="LC491" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="492" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
492
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<pre style="margin: 0;">+<span id="LC492" class="line" lang="plaintext"> In the following three paragraphs, a "patent license" is any express</span>
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<td class="diff-line-num new new_line" data-linenumber="493" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
493
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<pre style="margin: 0;">+<span id="LC493" class="line" lang="plaintext">agreement or commitment, however denominated, not to enforce a patent</span>
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494
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<pre style="margin: 0;">+<span id="LC494" class="line" lang="plaintext">(such as an express permission to practice a patent or covenant not to</span>
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<td class="diff-line-num new new_line" data-linenumber="495" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
495
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<pre style="margin: 0;">+<span id="LC495" class="line" lang="plaintext">sue for patent infringement). To "grant" such a patent license to a</span>
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496
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<pre style="margin: 0;">+<span id="LC496" class="line" lang="plaintext">party means to make such an agreement or commitment not to enforce a</span>
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497
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<pre style="margin: 0;">+<span id="LC497" class="line" lang="plaintext">patent against the party.</span>
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498
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<pre style="margin: 0;">+<span id="LC498" class="line" lang="plaintext"></span>
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499
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<pre style="margin: 0;">+<span id="LC499" class="line" lang="plaintext"> If you convey a covered work, knowingly relying on a patent license,</span>
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500
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<pre style="margin: 0;">+<span id="LC500" class="line" lang="plaintext">and the Corresponding Source of the work is not available for anyone</span>
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501
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<pre style="margin: 0;">+<span id="LC501" class="line" lang="plaintext">to copy, free of charge and under the terms of this License, through a</span>
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502
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<pre style="margin: 0;">+<span id="LC502" class="line" lang="plaintext">publicly available network server or other readily accessible means,</span>
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503
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<pre style="margin: 0;">+<span id="LC503" class="line" lang="plaintext">then you must either (1) cause the Corresponding Source to be so</span>
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504
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<pre style="margin: 0;">+<span id="LC504" class="line" lang="plaintext">available, or (2) arrange to deprive yourself of the benefit of the</span>
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<td class="diff-line-num new new_line" data-linenumber="505" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
505
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<pre style="margin: 0;">+<span id="LC505" class="line" lang="plaintext">patent license for this particular work, or (3) arrange, in a manner</span>
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<td class="diff-line-num new new_line" data-linenumber="506" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
506
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<pre style="margin: 0;">+<span id="LC506" class="line" lang="plaintext">consistent with the requirements of this License, to extend the patent</span>
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<td class="diff-line-num new new_line" data-linenumber="507" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
507
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<pre style="margin: 0;">+<span id="LC507" class="line" lang="plaintext">license to downstream recipients. "Knowingly relying" means you have</span>
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<td class="diff-line-num new new_line" data-linenumber="508" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
508
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<pre style="margin: 0;">+<span id="LC508" class="line" lang="plaintext">actual knowledge that, but for the patent license, your conveying the</span>
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<td class="diff-line-num new new_line" data-linenumber="509" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
509
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<pre style="margin: 0;">+<span id="LC509" class="line" lang="plaintext">covered work in a country, or your recipient's use of the covered work</span>
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<td class="diff-line-num new new_line" data-linenumber="510" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
510
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<pre style="margin: 0;">+<span id="LC510" class="line" lang="plaintext">in a country, would infringe one or more identifiable patents in that</span>
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<td class="diff-line-num new new_line" data-linenumber="511" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
511
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<pre style="margin: 0;">+<span id="LC511" class="line" lang="plaintext">country that you have reason to believe are valid.</span>
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512
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<pre style="margin: 0;">+<span id="LC512" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="513" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
513
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<pre style="margin: 0;">+<span id="LC513" class="line" lang="plaintext"> If, pursuant to or in connection with a single transaction or</span>
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<td class="diff-line-num new new_line" data-linenumber="514" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
514
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<pre style="margin: 0;">+<span id="LC514" class="line" lang="plaintext">arrangement, you convey, or propagate by procuring conveyance of, a</span>
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515
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<pre style="margin: 0;">+<span id="LC515" class="line" lang="plaintext">covered work, and grant a patent license to some of the parties</span>
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<td class="diff-line-num new new_line" data-linenumber="516" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
516
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<pre style="margin: 0;">+<span id="LC516" class="line" lang="plaintext">receiving the covered work authorizing them to use, propagate, modify</span>
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<td class="diff-line-num new new_line" data-linenumber="517" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
517
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<pre style="margin: 0;">+<span id="LC517" class="line" lang="plaintext">or convey a specific copy of the covered work, then the patent license</span>
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518
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<pre style="margin: 0;">+<span id="LC518" class="line" lang="plaintext">you grant is automatically extended to all recipients of the covered</span>
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519
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<pre style="margin: 0;">+<span id="LC519" class="line" lang="plaintext">work and works based on it.</span>
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520
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<pre style="margin: 0;">+<span id="LC520" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="521" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
521
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<pre style="margin: 0;">+<span id="LC521" class="line" lang="plaintext"> A patent license is "discriminatory" if it does not include within</span>
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<td class="diff-line-num new new_line" data-linenumber="522" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
522
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<pre style="margin: 0;">+<span id="LC522" class="line" lang="plaintext">the scope of its coverage, prohibits the exercise of, or is</span>
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<td class="diff-line-num new new_line" data-linenumber="523" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
523
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<pre style="margin: 0;">+<span id="LC523" class="line" lang="plaintext">conditioned on the non-exercise of one or more of the rights that are</span>
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524
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<pre style="margin: 0;">+<span id="LC524" class="line" lang="plaintext">specifically granted under this License. You may not convey a covered</span>
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525
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<pre style="margin: 0;">+<span id="LC525" class="line" lang="plaintext">work if you are a party to an arrangement with a third party that is</span>
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526
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<pre style="margin: 0;">+<span id="LC526" class="line" lang="plaintext">in the business of distributing software, under which you make payment</span>
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527
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<pre style="margin: 0;">+<span id="LC527" class="line" lang="plaintext">to the third party based on the extent of your activity of conveying</span>
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528
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<pre style="margin: 0;">+<span id="LC528" class="line" lang="plaintext">the work, and under which the third party grants, to any of the</span>
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529
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<pre style="margin: 0;">+<span id="LC529" class="line" lang="plaintext">parties who would receive the covered work from you, a discriminatory</span>
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530
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<pre style="margin: 0;">+<span id="LC530" class="line" lang="plaintext">patent license (a) in connection with copies of the covered work</span>
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<td class="diff-line-num new new_line" data-linenumber="531" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
531
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<pre style="margin: 0;">+<span id="LC531" class="line" lang="plaintext">conveyed by you (or copies made from those copies), or (b) primarily</span>
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532
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<pre style="margin: 0;">+<span id="LC532" class="line" lang="plaintext">for and in connection with specific products or compilations that</span>
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533
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<pre style="margin: 0;">+<span id="LC533" class="line" lang="plaintext">contain the covered work, unless you entered into that arrangement,</span>
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534
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<pre style="margin: 0;">+<span id="LC534" class="line" lang="plaintext">or that patent license was granted, prior to 28 March 2007.</span>
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535
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<pre style="margin: 0;">+<span id="LC535" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="536" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
536
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<pre style="margin: 0;">+<span id="LC536" class="line" lang="plaintext"> Nothing in this License shall be construed as excluding or limiting</span>
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537
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<pre style="margin: 0;">+<span id="LC537" class="line" lang="plaintext">any implied license or other defenses to infringement that may</span>
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538
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<pre style="margin: 0;">+<span id="LC538" class="line" lang="plaintext">otherwise be available to you under applicable patent law.</span>
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539
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<pre style="margin: 0;">+<span id="LC539" class="line" lang="plaintext"></span>
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540
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<pre style="margin: 0;">+<span id="LC540" class="line" lang="plaintext"> 12. No Surrender of Others' Freedom.</span>
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541
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<pre style="margin: 0;">+<span id="LC541" class="line" lang="plaintext"></span>
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542
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<pre style="margin: 0;">+<span id="LC542" class="line" lang="plaintext"> If conditions are imposed on you (whether by court order, agreement or</span>
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543
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<pre style="margin: 0;">+<span id="LC543" class="line" lang="plaintext">otherwise) that contradict the conditions of this License, they do not</span>
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544
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<pre style="margin: 0;">+<span id="LC544" class="line" lang="plaintext">excuse you from the conditions of this License. If you cannot convey a</span>
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545
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<pre style="margin: 0;">+<span id="LC545" class="line" lang="plaintext">covered work so as to satisfy simultaneously your obligations under this</span>
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546
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<pre style="margin: 0;">+<span id="LC546" class="line" lang="plaintext">License and any other pertinent obligations, then as a consequence you may</span>
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547
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<pre style="margin: 0;">+<span id="LC547" class="line" lang="plaintext">not convey it at all. For example, if you agree to terms that obligate you</span>
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548
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<pre style="margin: 0;">+<span id="LC548" class="line" lang="plaintext">to collect a royalty for further conveying from those to whom you convey</span>
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549
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<pre style="margin: 0;">+<span id="LC549" class="line" lang="plaintext">the Program, the only way you could satisfy both those terms and this</span>
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550
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<pre style="margin: 0;">+<span id="LC550" class="line" lang="plaintext">License would be to refrain entirely from conveying the Program.</span>
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551
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<pre style="margin: 0;">+<span id="LC551" class="line" lang="plaintext"></span>
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552
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<pre style="margin: 0;">+<span id="LC552" class="line" lang="plaintext"> 13. Use with the GNU Affero General Public License.</span>
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553
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<pre style="margin: 0;">+<span id="LC553" class="line" lang="plaintext"></span>
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554
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<pre style="margin: 0;">+<span id="LC554" class="line" lang="plaintext"> Notwithstanding any other provision of this License, you have</span>
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555
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<pre style="margin: 0;">+<span id="LC555" class="line" lang="plaintext">permission to link or combine any covered work with a work licensed</span>
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556
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<pre style="margin: 0;">+<span id="LC556" class="line" lang="plaintext">under version 3 of the GNU Affero General Public License into a single</span>
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557
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<pre style="margin: 0;">+<span id="LC557" class="line" lang="plaintext">combined work, and to convey the resulting work. The terms of this</span>
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558
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<pre style="margin: 0;">+<span id="LC558" class="line" lang="plaintext">License will continue to apply to the part which is the covered work,</span>
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559
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<pre style="margin: 0;">+<span id="LC559" class="line" lang="plaintext">but the special requirements of the GNU Affero General Public License,</span>
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560
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<pre style="margin: 0;">+<span id="LC560" class="line" lang="plaintext">section 13, concerning interaction through a network will apply to the</span>
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561
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<pre style="margin: 0;">+<span id="LC561" class="line" lang="plaintext">combination as such.</span>
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562
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<pre style="margin: 0;">+<span id="LC562" class="line" lang="plaintext"></span>
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563
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<pre style="margin: 0;">+<span id="LC563" class="line" lang="plaintext"> 14. Revised Versions of this License.</span>
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564
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<pre style="margin: 0;">+<span id="LC564" class="line" lang="plaintext"></span>
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565
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<pre style="margin: 0;">+<span id="LC565" class="line" lang="plaintext"> The Free Software Foundation may publish revised and/or new versions of</span>
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566
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<pre style="margin: 0;">+<span id="LC566" class="line" lang="plaintext">the GNU General Public License from time to time. Such new versions will</span>
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567
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<pre style="margin: 0;">+<span id="LC567" class="line" lang="plaintext">be similar in spirit to the present version, but may differ in detail to</span>
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568
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<pre style="margin: 0;">+<span id="LC568" class="line" lang="plaintext">address new problems or concerns.</span>
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569
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<pre style="margin: 0;">+<span id="LC569" class="line" lang="plaintext"></span>
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570
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<pre style="margin: 0;">+<span id="LC570" class="line" lang="plaintext"> Each version is given a distinguishing version number. If the</span>
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571
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<pre style="margin: 0;">+<span id="LC571" class="line" lang="plaintext">Program specifies that a certain numbered version of the GNU General</span>
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<td class="diff-line-num new new_line" data-linenumber="572" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
572
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<pre style="margin: 0;">+<span id="LC572" class="line" lang="plaintext">Public License "or any later version" applies to it, you have the</span>
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573
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<pre style="margin: 0;">+<span id="LC573" class="line" lang="plaintext">option of following the terms and conditions either of that numbered</span>
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<td class="diff-line-num new new_line" data-linenumber="574" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
574
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<pre style="margin: 0;">+<span id="LC574" class="line" lang="plaintext">version or of any later version published by the Free Software</span>
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575
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<pre style="margin: 0;">+<span id="LC575" class="line" lang="plaintext">Foundation. If the Program does not specify a version number of the</span>
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576
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<pre style="margin: 0;">+<span id="LC576" class="line" lang="plaintext">GNU General Public License, you may choose any version ever published</span>
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577
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<pre style="margin: 0;">+<span id="LC577" class="line" lang="plaintext">by the Free Software Foundation.</span>
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578
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<pre style="margin: 0;">+<span id="LC578" class="line" lang="plaintext"></span>
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579
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<pre style="margin: 0;">+<span id="LC579" class="line" lang="plaintext"> If the Program specifies that a proxy can decide which future</span>
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580
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<pre style="margin: 0;">+<span id="LC580" class="line" lang="plaintext">versions of the GNU General Public License can be used, that proxy's</span>
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581
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<pre style="margin: 0;">+<span id="LC581" class="line" lang="plaintext">public statement of acceptance of a version permanently authorizes you</span>
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582
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<pre style="margin: 0;">+<span id="LC582" class="line" lang="plaintext">to choose that version for the Program.</span>
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583
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<pre style="margin: 0;">+<span id="LC583" class="line" lang="plaintext"></span>
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584
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<pre style="margin: 0;">+<span id="LC584" class="line" lang="plaintext"> Later license versions may give you additional or different</span>
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585
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<pre style="margin: 0;">+<span id="LC585" class="line" lang="plaintext">permissions. However, no additional obligations are imposed on any</span>
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586
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<pre style="margin: 0;">+<span id="LC586" class="line" lang="plaintext">author or copyright holder as a result of your choosing to follow a</span>
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587
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<pre style="margin: 0;">+<span id="LC587" class="line" lang="plaintext">later version.</span>
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588
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<pre style="margin: 0;">+<span id="LC588" class="line" lang="plaintext"></span>
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589
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<pre style="margin: 0;">+<span id="LC589" class="line" lang="plaintext"> 15. Disclaimer of Warranty.</span>
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590
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<pre style="margin: 0;">+<span id="LC590" class="line" lang="plaintext"></span>
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591
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<pre style="margin: 0;">+<span id="LC591" class="line" lang="plaintext"> THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY</span>
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592
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<pre style="margin: 0;">+<span id="LC592" class="line" lang="plaintext">APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT</span>
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593
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<pre style="margin: 0;">+<span id="LC593" class="line" lang="plaintext">HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY</span>
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594
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<pre style="margin: 0;">+<span id="LC594" class="line" lang="plaintext">OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO,</span>
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595
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<pre style="margin: 0;">+<span id="LC595" class="line" lang="plaintext">THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR</span>
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596
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<pre style="margin: 0;">+<span id="LC596" class="line" lang="plaintext">PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM</span>
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<td class="diff-line-num new new_line" data-linenumber="597" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
597
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<pre style="margin: 0;">+<span id="LC597" class="line" lang="plaintext">IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF</span>
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<td class="diff-line-num new new_line" data-linenumber="598" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
598
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<pre style="margin: 0;">+<span id="LC598" class="line" lang="plaintext">ALL NECESSARY SERVICING, REPAIR OR CORRECTION.</span>
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599
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<pre style="margin: 0;">+<span id="LC599" class="line" lang="plaintext"></span>
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600
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<pre style="margin: 0;">+<span id="LC600" class="line" lang="plaintext"> 16. Limitation of Liability.</span>
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601
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<pre style="margin: 0;">+<span id="LC601" class="line" lang="plaintext"></span>
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602
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<pre style="margin: 0;">+<span id="LC602" class="line" lang="plaintext"> IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING</span>
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603
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<pre style="margin: 0;">+<span id="LC603" class="line" lang="plaintext">WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS</span>
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604
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<pre style="margin: 0;">+<span id="LC604" class="line" lang="plaintext">THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY</span>
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605
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<pre style="margin: 0;">+<span id="LC605" class="line" lang="plaintext">GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE</span>
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606
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<pre style="margin: 0;">+<span id="LC606" class="line" lang="plaintext">USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF</span>
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607
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<pre style="margin: 0;">+<span id="LC607" class="line" lang="plaintext">DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD</span>
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608
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<pre style="margin: 0;">+<span id="LC608" class="line" lang="plaintext">PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),</span>
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609
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<pre style="margin: 0;">+<span id="LC609" class="line" lang="plaintext">EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF</span>
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610
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<pre style="margin: 0;">+<span id="LC610" class="line" lang="plaintext">SUCH DAMAGES.</span>
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611
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<pre style="margin: 0;">+<span id="LC611" class="line" lang="plaintext"></span>
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612
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<pre style="margin: 0;">+<span id="LC612" class="line" lang="plaintext"> 17. Interpretation of Sections 15 and 16.</span>
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613
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<pre style="margin: 0;">+<span id="LC613" class="line" lang="plaintext"></span>
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614
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<pre style="margin: 0;">+<span id="LC614" class="line" lang="plaintext"> If the disclaimer of warranty and limitation of liability provided</span>
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615
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<pre style="margin: 0;">+<span id="LC615" class="line" lang="plaintext">above cannot be given local legal effect according to their terms,</span>
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616
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<pre style="margin: 0;">+<span id="LC616" class="line" lang="plaintext">reviewing courts shall apply local law that most closely approximates</span>
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617
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<pre style="margin: 0;">+<span id="LC617" class="line" lang="plaintext">an absolute waiver of all civil liability in connection with the</span>
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<td class="diff-line-num new new_line" data-linenumber="618" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
618
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<pre style="margin: 0;">+<span id="LC618" class="line" lang="plaintext">Program, unless a warranty or assumption of liability accompanies a</span>
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619
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<pre style="margin: 0;">+<span id="LC619" class="line" lang="plaintext">copy of the Program in return for a fee.</span>
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620
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<pre style="margin: 0;">+<span id="LC620" class="line" lang="plaintext"></span>
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621
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<pre style="margin: 0;">+<span id="LC621" class="line" lang="plaintext"> END OF TERMS AND CONDITIONS</span>
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622
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<pre style="margin: 0;">+<span id="LC622" class="line" lang="plaintext"></span>
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623
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<pre style="margin: 0;">+<span id="LC623" class="line" lang="plaintext"> How to Apply These Terms to Your New Programs</span>
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624
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<pre style="margin: 0;">+<span id="LC624" class="line" lang="plaintext"></span>
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625
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<pre style="margin: 0;">+<span id="LC625" class="line" lang="plaintext"> If you develop a new program, and you want it to be of the greatest</span>
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626
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<pre style="margin: 0;">+<span id="LC626" class="line" lang="plaintext">possible use to the public, the best way to achieve this is to make it</span>
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627
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<pre style="margin: 0;">+<span id="LC627" class="line" lang="plaintext">free software which everyone can redistribute and change under these terms.</span>
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628
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<pre style="margin: 0;">+<span id="LC628" class="line" lang="plaintext"></span>
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629
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<pre style="margin: 0;">+<span id="LC629" class="line" lang="plaintext"> To do so, attach the following notices to the program. It is safest</span>
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630
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<pre style="margin: 0;">+<span id="LC630" class="line" lang="plaintext">to attach them to the start of each source file to most effectively</span>
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631
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<pre style="margin: 0;">+<span id="LC631" class="line" lang="plaintext">state the exclusion of warranty; and each file should have at least</span>
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632
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<pre style="margin: 0;">+<span id="LC632" class="line" lang="plaintext">the "copyright" line and a pointer to where the full notice is found.</span>
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633
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<pre style="margin: 0;">+<span id="LC633" class="line" lang="plaintext"></span>
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634
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<pre style="margin: 0;">+<span id="LC634" class="line" lang="plaintext"> <one line to give the program's name and a brief idea of what it does.></span>
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635
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<pre style="margin: 0;">+<span id="LC635" class="line" lang="plaintext"> Copyright (C) <year> <name of author></span>
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636
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<pre style="margin: 0;">+<span id="LC636" class="line" lang="plaintext"></span>
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637
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<pre style="margin: 0;">+<span id="LC637" class="line" lang="plaintext"> This program is free software: you can redistribute it and/or modify</span>
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638
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<pre style="margin: 0;">+<span id="LC638" class="line" lang="plaintext"> it under the terms of the GNU General Public License as published by</span>
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639
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<pre style="margin: 0;">+<span id="LC639" class="line" lang="plaintext"> the Free Software Foundation, either version 3 of the License, or</span>
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640
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<pre style="margin: 0;">+<span id="LC640" class="line" lang="plaintext"> (at your option) any later version.</span>
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641
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<pre style="margin: 0;">+<span id="LC641" class="line" lang="plaintext"></span>
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642
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<pre style="margin: 0;">+<span id="LC642" class="line" lang="plaintext"> This program is distributed in the hope that it will be useful,</span>
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643
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<pre style="margin: 0;">+<span id="LC643" class="line" lang="plaintext"> but WITHOUT ANY WARRANTY; without even the implied warranty of</span>
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644
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<pre style="margin: 0;">+<span id="LC644" class="line" lang="plaintext"> MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span>
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645
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<pre style="margin: 0;">+<span id="LC645" class="line" lang="plaintext"> GNU General Public License for more details.</span>
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646
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<pre style="margin: 0;">+<span id="LC646" class="line" lang="plaintext"></span>
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647
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<pre style="margin: 0;">+<span id="LC647" class="line" lang="plaintext"> You should have received a copy of the GNU General Public License</span>
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648
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<pre style="margin: 0;">+<span id="LC648" class="line" lang="plaintext"> along with this program. If not, see <https://www.gnu.org/licenses/>.</span>
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649
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<pre style="margin: 0;">+<span id="LC649" class="line" lang="plaintext"></span>
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650
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<pre style="margin: 0;">+<span id="LC650" class="line" lang="plaintext">Also add information on how to contact you by electronic and paper mail.</span>
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651
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<pre style="margin: 0;">+<span id="LC651" class="line" lang="plaintext"></span>
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652
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<pre style="margin: 0;">+<span id="LC652" class="line" lang="plaintext"> If the program does terminal interaction, make it output a short</span>
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653
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<pre style="margin: 0;">+<span id="LC653" class="line" lang="plaintext">notice like this when it starts in an interactive mode:</span>
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654
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<pre style="margin: 0;">+<span id="LC654" class="line" lang="plaintext"></span>
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655
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<pre style="margin: 0;">+<span id="LC655" class="line" lang="plaintext"> <program> Copyright (C) <year> <name of author></span>
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656
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<pre style="margin: 0;">+<span id="LC656" class="line" lang="plaintext"> This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.</span>
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657
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<pre style="margin: 0;">+<span id="LC657" class="line" lang="plaintext"> This is free software, and you are welcome to redistribute it</span>
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658
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<pre style="margin: 0;">+<span id="LC658" class="line" lang="plaintext"> under certain conditions; type `show c' for details.</span>
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659
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<pre style="margin: 0;">+<span id="LC659" class="line" lang="plaintext"></span>
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660
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<pre style="margin: 0;">+<span id="LC660" class="line" lang="plaintext">The hypothetical commands `show w' and `show c' should show the appropriate</span>
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661
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<pre style="margin: 0;">+<span id="LC661" class="line" lang="plaintext">parts of the General Public License. Of course, your program's commands</span>
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662
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<pre style="margin: 0;">+<span id="LC662" class="line" lang="plaintext">might be different; for a GUI interface, you would use an "about box".</span>
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663
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<pre style="margin: 0;">+<span id="LC663" class="line" lang="plaintext"></span>
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664
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<pre style="margin: 0;">+<span id="LC664" class="line" lang="plaintext"> You should also get your employer (if you work as a programmer) or school,</span>
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665
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<pre style="margin: 0;">+<span id="LC665" class="line" lang="plaintext">if any, to sign a "copyright disclaimer" for the program, if necessary.</span>
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666
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<pre style="margin: 0;">+<span id="LC666" class="line" lang="plaintext">For more information on this, and how to apply and follow the GNU GPL, see</span>
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667
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<pre style="margin: 0;">+<span id="LC667" class="line" lang="plaintext"><https://www.gnu.org/licenses/>.</span>
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668
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<pre style="margin: 0;">+<span id="LC668" class="line" lang="plaintext"></span>
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669
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<pre style="margin: 0;">+<span id="LC669" class="line" lang="plaintext"> The GNU General Public License does not permit incorporating your program</span>
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<pre style="margin: 0;">+<span id="LC670" class="line" lang="plaintext">into proprietary programs. If your program is a subroutine library, you</span>
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<pre style="margin: 0;">+<span id="LC671" class="line" lang="plaintext">may consider it more useful to permit linking proprietary applications with</span>
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672
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<pre style="margin: 0;">+<span id="LC672" class="line" lang="plaintext">the library. If this is what you want to do, use the GNU Lesser General</span>
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673
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<pre style="margin: 0;">+<span id="LC673" class="line" lang="plaintext">Public License instead of this License. But first, please read</span>
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674
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<pre style="margin: 0;">+<span id="LC674" class="line" lang="plaintext"><https://www.gnu.org/licenses/why-not-lgpl.html>.</span></pre>
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<li id="d2b63be0a8fb089e3c066d6465ec45d15c9ea5e9">
<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#d2b63be0a8fb089e3c066d6465ec45d15c9ea5e9"><strong>vendor/btl_bloomfilter/Tests/AdHoc/BloomFilterTests.cpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -120,6 +120,8 @@ main()</td>
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120
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="cpp"></span>
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121
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="cpp"> <span class="n" style="color: #333;">cout</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"premade bf tests done"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#if __linux__</span></span>
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124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="cpp"></span>
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123
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// memory leak tests</span></span>
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="cpp"> <span class="n" style="color: #333;">BloomFilter</span><span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">filter3</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">BloomFilter</span><span class="p">(</span><span class="n" style="color: #333;">filterSize</span><span class="p">,</span> <span class="mi" style="color: #099;">5</span><span class="p">,</span> <span class="mi" style="color: #099;">20</span><span class="p">);</span></span>
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127
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="cpp"></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -138,6 +140,8 @@ main()</td>
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138
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140
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="cpp"> <span class="n" style="color: #333;">cout</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"memory leak prevention tests done"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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139
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141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="cpp"> <span class="n" style="color: #333;">cout</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">memory_usage</span><span class="p">()</span> <span class="o" style="font-weight: 600;">-</span> <span class="n" style="color: #333;">memUsage</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"kb"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="cpp"></span>
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141
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="cpp"> <span class="n" style="color: #333;">remove</span><span class="p">(</span><span class="n" style="color: #333;">filename</span><span class="p">.</span><span class="n" style="color: #333;">c_str</span><span class="p">());</span></span>
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="cpp"></span>
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143
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// //check parallelized code speed</span></span>
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<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#99bac1f2a5a2c65cbb10f170efcd0f09412240b6"><strong>vendor/btl_bloomfilter/azure-pipelines.yml</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="yaml"><span class="na" style="color: #008080;">pool</span><span class="pi">:</span></span>
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="yaml"> <span class="na" style="color: #008080;">vmImage</span><span class="pi">:</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">Ubuntu</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">16.04"</span></span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="yaml"><span class="na" style="color: #008080;">jobs</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="yaml"><span class="pi">-</span> <span class="na" style="color: #008080;">job</span><span class="pi">:</span> <span class="s" style="color: #d14;">linux_gcc_default</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="yaml"> <span class="na" style="color: #008080;">pool</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="yaml"> <span class="na" style="color: #008080;">vmImage</span><span class="pi">:</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">Ubuntu</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">16.04"</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="yaml"> <span class="na" style="color: #008080;">steps</span><span class="pi">:</span></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">script</span><span class="pi">:</span> <span class="pi">|</span></span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="yaml"> <span class="no" style="color: #008080;">./autogen.sh</span></span>
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8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="yaml"> <span class="no" style="color: #008080;">./configure</span></span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="yaml"> <span class="no" style="color: #008080;">make distcheck</span></span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="yaml"> <span class="na" style="color: #008080;">displayName</span><span class="pi">:</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">Compile</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">btl_bloomfilter</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">with</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">gcc_default"</span></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">script</span><span class="pi">:</span> <span class="pi">|</span></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="yaml"> <span class="no" style="color: #008080;">curl https://apt.llvm.org/llvm-snapshot.gpg.key | sudo apt-key add -</span></span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="yaml"> <span class="no" style="color: #008080;">sudo apt-add-repository "deb http://apt.llvm.org/xenial/ llvm-toolchain-xenial-8 main"</span></span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="yaml"> <span class="no" style="color: #008080;">sudo apt-get update</span></span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="yaml"> <span class="no" style="color: #008080;">sudo apt-get install -y --no-install-recommends clang-format-8</span></span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="yaml"> <span class="no" style="color: #008080;">sudo ln -s clang-format-8 /usr/bin/clang-format</span></span>
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<td class="diff-line-num new new_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="yaml"> <span class="na" style="color: #008080;">displayName</span><span class="pi">:</span> <span class="s" style="color: #d14;">Install clang-format</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">script</span><span class="pi">:</span> <span class="s" style="color: #d14;">make clang-format</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="yaml"> <span class="na" style="color: #008080;">displayName</span><span class="pi">:</span> <span class="s" style="color: #d14;">Run clang-format</span></span>
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3
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20
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="yaml"></span>
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4
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="yaml"><span class="na" style="color: #008080;">steps</span><span class="pi">:</span></span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="yaml"><span class="pi">-</span> <span class="na" style="color: #008080;">script</span><span class="pi">:</span> <span class="pi">|</span></span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="yaml"> <span class="no" style="color: #008080;">./autogen.sh</span></span>
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7
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="yaml"> <span class="no" style="color: #008080;">./configure</span></span>
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8
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="yaml"> <span class="no" style="color: #008080;">make distcheck</span></span>
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9
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<td class="diff-line-num new_line old" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="yaml"> <span class="na" style="color: #008080;">displayName</span><span class="pi">:</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">Compile</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">btl_bloomfilter"</span></span>
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10
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="yaml"><span class="pi">-</span> <span class="na" style="color: #008080;">script</span><span class="pi">:</span> <span class="pi">|</span></span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="yaml"> <span class="no" style="color: #008080;">curl https://apt.llvm.org/llvm-snapshot.gpg.key | sudo apt-key add -</span></span>
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12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="yaml"> <span class="no" style="color: #008080;">sudo apt-add-repository "deb http://apt.llvm.org/xenial/ llvm-toolchain-xenial-8 main"</span></span>
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13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="yaml"> <span class="no" style="color: #008080;">sudo apt-get update</span></span>
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14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="yaml"> <span class="no" style="color: #008080;">sudo apt-get install -y --no-install-recommends clang-format-8</span></span>
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15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="yaml"> <span class="no" style="color: #008080;">sudo ln -s clang-format-8 /usr/bin/clang-format</span></span>
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<td class="diff-line-num old old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
16
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<td class="diff-line-num new_line old" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="yaml"> <span class="na" style="color: #008080;">displayName</span><span class="pi">:</span> <span class="s" style="color: #d14;">Install clang-format</span></span>
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<td class="diff-line-num old old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
17
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<td class="diff-line-num new_line old" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="yaml"><span class="pi">-</span> <span class="na" style="color: #008080;">script</span><span class="pi">:</span> <span class="s" style="color: #d14;">make clang-format</span></span>
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18
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<td class="diff-line-num new_line old" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="yaml"> <span class="na" style="color: #008080;">displayName</span><span class="pi">:</span> <span class="s" style="color: #d14;">Run clang-format</span></span></pre>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="yaml"><span class="pi">-</span> <span class="na" style="color: #008080;">job</span><span class="pi">:</span> <span class="s" style="color: #d14;">linux_clang6</span></span>
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<td class="diff-line-num new new_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="yaml"> <span class="na" style="color: #008080;">pool</span><span class="pi">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="yaml"> <span class="na" style="color: #008080;">vmImage</span><span class="pi">:</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">Ubuntu</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">16.04"</span></span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="yaml"> <span class="na" style="color: #008080;">steps</span><span class="pi">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">script</span><span class="pi">:</span> <span class="s" style="color: #d14;">sudo apt-get install -qq clang-6.0</span></span>
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<td class="diff-line-num new new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="yaml"> <span class="na" style="color: #008080;">displayName</span><span class="pi">:</span> <span class="s" style="color: #d14;">Install clang-6.0</span></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">script</span><span class="pi">:</span> <span class="pi">|</span></span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="yaml"> <span class="no" style="color: #008080;">./autogen.sh</span></span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="yaml"> <span class="no" style="color: #008080;">./configure CC=clang-6.0 CXX=clang++-6.0</span></span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="yaml"> <span class="no" style="color: #008080;">make distcheck</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="yaml"> <span class="na" style="color: #008080;">displayName</span><span class="pi">:</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">Compile</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">btl_bloomfilter</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">with</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">clang</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">6.0"</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="yaml"></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="yaml"><span class="pi">-</span> <span class="na" style="color: #008080;">job</span><span class="pi">:</span> <span class="s" style="color: #d14;">macOS_gcc_default</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="yaml"> <span class="na" style="color: #008080;">pool</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="yaml"> <span class="na" style="color: #008080;">vmImage</span><span class="pi">:</span> <span class="s" style="color: #d14;">macOS-10.14</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="yaml"> <span class="na" style="color: #008080;">steps</span><span class="pi">:</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">script</span><span class="pi">:</span> <span class="pi">|</span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="yaml"> <span class="no" style="color: #008080;">brew update</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="yaml"> <span class="no" style="color: #008080;">brew install automake</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="yaml"> <span class="na" style="color: #008080;">displayName</span><span class="pi">:</span> <span class="s" style="color: #d14;">Install automake</span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="yaml"> <span class="pi">-</span> <span class="na" style="color: #008080;">script</span><span class="pi">:</span> <span class="pi">|</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="yaml"> <span class="no" style="color: #008080;">./autogen.sh</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="yaml"> <span class="no" style="color: #008080;">./configure</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="yaml"> <span class="no" style="color: #008080;">make distcheck</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="yaml"> <span class="na" style="color: #008080;">displayName</span><span class="pi">:</span> <span class="s2" style="color: #d14;">"</span><span class="s" style="color: #d14;">Compile</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">btl_bloomfilter</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">with</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">default</span><span class="nv" style="color: #008080;"> </span><span class="s" style="color: #d14;">gcc"</span></span></pre>
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<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#4294b5e82ebfcb245650796703eba040c24264ba"><strong>vendor/btl_bloomfilter/configure.ac</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2,7 +2,7 @@</td>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"># Process this file with autoconf to produce a configure script.</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"></span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">AC_PREREQ(2.59)</span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">AC_INIT(BLOOMFILTER, 1.2.<span class="idiff left right">0</span>, cjustin@bcgsc.ca)</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">AC_INIT(BLOOMFILTER, 1.2.<span class="idiff left right">1</span>, cjustin@bcgsc.ca)</span>
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">AC_CANONICAL_SYSTEM</span>
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7
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7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext"></span>
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8
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8
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">AM_INIT_AUTOMAKE()</span>
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<li id="4c633b113aaad82a11a9a119cdb18eca389d8c33">
<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#4c633b113aaad82a11a9a119cdb18eca389d8c33"><strong>vendor/btl_bloomfilter/swig/test.pl</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#!/usr/bin/perl</span></span>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#!/usr/bin/<span class="idiff left right">env </span>perl</span></span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="perl"></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">FindBin</span><span class="p">;</span></span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">lib</span> <span class="p">"</span><span class="si" style="color: #d14;">$FindBin</span><span class="s2" style="color: #d14;">::Bin/./</span><span class="p">";</span></span>
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3
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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">BloomFilter</span><span class="p">;</span></span>
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4
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="perl"></span>
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5
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#Same inputs as the adhoc tests</span></span>
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<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#b06bc278883dadcc3aa38d074db7824aa8b83094"><strong>vendor/btl_bloomfilter/swig/testBloom_rolling.pl</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#!/usr/bin/perl</span></span>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#!/usr/bin/<span class="idiff left right">env </span>perl</span></span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="perl"></span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="perl"></span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#AUTHOR</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -31,6 +31,7 @@ use FindBin;</td>
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31
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#perl 5.10.0</span></span>
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<td class="diff-line-num old_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#use lib "/projects/rwarren_prj2/LINKS/paper/links_v1.5.2/lib/Bloom-Faster-1.7/bloom5-16-3/lib/site_perl/5.16.3/x86_64-linux";###rebuild against PERL version or replace by pre-built</span></span>
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33
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#use Bloom::Faster;</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">lib</span> <span class="p">"</span><span class="si" style="color: #d14;">$FindBin</span><span class="s2" style="color: #d14;">::Bin/./</span><span class="p">";</span></span>
</pre>
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34
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<td class="diff-line-num new_line" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">BloomFilter</span><span class="p">;</span></span>
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35
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nn" style="color: #555;">Getopt::</span><span class="nv" style="color: #008080;">Std</span><span class="p">;</span></span>
</pre>
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36
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nn" style="color: #555;">Net::</span><span class="nv" style="color: #008080;">SMTP</span><span class="p">;</span></span>
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<li id="975bf1721e67148aa7b12f71c9ca1e6c9de5ab8c">
<a href="https://salsa.debian.org/med-team/abyss/compare/030e2cb2973695b79fda1c2d99594713e5efa096...acb475098819c0d7d7a34465551fe3df2d4f9804#975bf1721e67148aa7b12f71c9ca1e6c9de5ab8c"><strong>vendor/btl_bloomfilter/swig/writeBloom_rolling.pl</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#!/usr/bin/perl</span></span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#!/usr/bin/<span class="idiff left right">env </span>perl</span></span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="perl"></span>
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3
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="perl"></span>
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4
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#AUTHOR</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -31,6 +31,7 @@ use FindBin;</td>
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31
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#perl 5.10.0</span></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#use lib "$FindBin::Bin/../lib/Bloom-Faster-1.7/bloom5-16-3/lib/site_perl/5.16.3/x86_64-linux";###rebuild against PERL version or replace by pre-built</span></span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="perl"><span class="c1" style="color: #998; font-style: italic;">#use Bloom::Faster;</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">lib</span> <span class="p">"</span><span class="si" style="color: #d14;">$FindBin</span><span class="s2" style="color: #d14;">::Bin/./</span><span class="p">";</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nv" style="color: #008080;">BloomFilter</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nn" style="color: #555;">Getopt::</span><span class="nv" style="color: #008080;">Std</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="perl"><span class="k" style="font-weight: 600;">use</span> <span class="nn" style="color: #555;">Net::</span><span class="nv" style="color: #008080;">SMTP</span><span class="p">;</span></span>
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