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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/libmaus2">Debian Med / libmaus2</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109">f9353a7e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-08-19T16:17:20Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.0.657</pre>
</li>
</ul>
<h4>29 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
ChangeLog
</a>
</li>
<li class="file-stats">
<a href="#87e1ff08628052814f9915f64583e2bc052622e1">
autom4te.cache/output.0
</a>
</li>
<li class="file-stats">
<a href="#f04a2fa780fab5f9b3c7dc36b8569f0952e719be">
autom4te.cache/output.1
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<li class="file-stats">
<a href="#418e6ff6d249ab486b581375a60abfa5e5cb9548">
autom4te.cache/output.2
</a>
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<li class="file-stats">
<a href="#931f2452d79a9fde0c930f26bdfd1016cb237b0e">
autom4te.cache/requests
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<li class="file-stats">
<a href="#b963683c5362dd156ab8704a64df661f00f5dfbc">
autom4te.cache/traces.1
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<li class="file-stats">
<a href="#09be8533ff0a6ee5d577f971145ed449399fcda4">
configure
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<li class="file-stats">
<a href="#87db583be5c13c1f7b3c958b10e03d67b6a2ca06">
configure.ac
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<li class="file-stats">
<a href="#67e794015a01b8816bd16290e5f8538236da8245">
src/Makefile.am
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<li class="file-stats">
<a href="#49df23e069b78a534b14d2841918824dddc91a6b">
src/Makefile.in
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<li class="file-stats">
<a href="#7cc9364b6b07eae58b95a5fd9a88fb73161c8263">
src/libmaus2/aio/TempFileArray.hpp
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<li class="file-stats">
<a href="#bd763f31b698f4e8a9c0b5fb6205c8f754241645">
src/libmaus2/autoarray/AutoArray.hpp
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<li class="file-stats">
<a href="#26b31d14d5585f805b9431d7a395c14aad970d5b">
src/libmaus2/bambam/ReadEndsBlockIndexSet.hpp
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<li class="file-stats">
<a href="#4d497ee1e898c1055f8b71e9ec563a29ef92e1e5">
src/libmaus2/bambam/parallel/BlockSortControl.hpp
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<li class="file-stats">
<a href="#03ea54f28a6e81eb66bbb3e8c3b2e899fd117bcd">
src/libmaus2/bambam/parallel/FragReadEndsMergeWorkPackage.hpp
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<li class="file-stats">
<a href="#7977e73f79be4229645fa39c06f64187fe40152a">
src/libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageDispatcher.hpp
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<li class="file-stats">
<a href="#dcfd96938c65aa9168c2d26a5ebc3ada71a70273">
src/libmaus2/bambam/parallel/PairReadEndsMergeWorkPackage.hpp
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<li class="file-stats">
<a href="#4be54fcd86526de1641f620a8cbe6a3b1137200a">
src/libmaus2/bambam/parallel/PairReadEndsMergeWorkPackageDispatcher.hpp
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<li class="file-stats">
<a href="#98f3eac095f5c325c1bfba1f16ee8c49c7ddd583">
<span class="new-file">
+
src/libmaus2/network/ClientSocket.hpp
</span>
</a>
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<li class="file-stats">
<a href="#51e7ab33c4e7aaf6d64efd2f38458df7d116dc89">
src/libmaus2/network/FtpSocket.hpp
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<li class="file-stats">
<a href="#c256e3c4f1a1bb96319a8c14c7b7903f97d06324">
src/libmaus2/network/GnuTLSSocket.hpp
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<li class="file-stats">
<a href="#cb7e5a0c0af198ee9d8f63b52c234fe533f1c820">
src/libmaus2/network/HttpHeader.hpp
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<li class="file-stats">
<a href="#4e81b3983d183629a59930d319ee6b18ba09d351">
<span class="new-file">
+
src/libmaus2/network/ServerSocket.hpp
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<li class="file-stats">
<a href="#bcfeb543389b18954150c59ffd65ff09eac4ba79">
src/libmaus2/network/Socket.hpp
→
src/libmaus2/network/SocketBase.hpp
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<li class="file-stats">
<a href="#e9467faf74358067a78d4515df3859162628f451">
src/libmaus2/network/SocketInputStreamBuffer.hpp
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<li class="file-stats">
<a href="#50963370a464f7667acff79c58f4d9eeb1bed5aa">
src/libmaus2/rank/ImpCacheLineRank.hpp
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<li class="file-stats">
<a href="#43d7da2f721ade5fbfc0bfa4716d6b3e71194453">
src/libmaus2/suffixsort/SkewSuffixSort.hpp
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<li class="file-stats">
<a href="#83f5d3ceaccb726789ffebc5b84875b5649986fd">
src/test/testfqbgzf.cpp
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<li class="file-stats">
<a href="#0a113889f0754a0223fa3ff51f95fdc5e044bca7">
src/test/testparallelbamblocksort.cpp
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</li>
</ul>
<h4>Changes:</h4>
<li id="00fe7828d56d7a3ee4030d6cea057cf13f50e70c">
<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#00fe7828d56d7a3ee4030d6cea057cf13f50e70c"><strong>ChangeLog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">libmaus2 (2.0.657-1) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<td class="diff-line-num new new_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * allow limiting parallelism in fragment merging of BlockSortControl (implicitely reduces number of open files)</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"> -- German Tischler-Höhle <germant@miltenyibiotec.de> Mon, 19 Aug 2019 14:29:09 +0200</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">libmaus2 (2.0.656-1) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * refactoring socket classes</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * refactor and guard against interupted system calls in Socket.hpp</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> -- German Tischler-Höhle <germant@miltenyibiotec.de> Fri, 16 Aug 2019 10:54:29 +0200</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext">libmaus2 (2.0.655-1) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext"> * refactor AutoArray and avoid mismatching alloc/dealloc pairs (do not deallocate memory allocated through new [] using free)</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> -- German Tischler-Höhle <germant@miltenyibiotec.de> Thu, 15 Aug 2019 21:20:31 +0200</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext">libmaus2 (2.0.654-1) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> * remove extraneous include directive in SkewSuffixSort</span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> * add missing include directive in TempFileArray</span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext"> -- German Tischler-Höhle <germant@miltenyibiotec.de> Tue, 13 Aug 2019 15:58:13 +0200</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext">libmaus2 (2.0.653-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> * add getNextReferenceLength/getNextFrontDel/getNextReferenceInterval in BamAlignmentDecoderBase/BamAlignment</span>
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<li id="87e1ff08628052814f9915f64583e2bc052622e1">
<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#87e1ff08628052814f9915f64583e2bc052622e1"><strong>autom4te.cache/output.0</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">@%:@! /bin/sh</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">@%:@ Guess values for system-dependent variables and create Makefiles.</span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">@%:@ Generated by GNU Autoconf 2.69 for libmaus2 2.0.65<span class="idiff left right">2</span>.</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">@%:@ Generated by GNU Autoconf 2.69 for libmaus2 2.0.65<span class="idiff left right">6</span>.</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">@%:@</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">@%:@ Report bugs to <tischler@mpi-cbg.de>.</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">@%:@ </span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="590" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="590" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -590,8 +590,8 @@ MAKEFLAGS=</td>
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<pre style="margin: 0;"> <span id="LC590" class="line" lang="plaintext"># Identity of this package.</span>
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<pre style="margin: 0;"> <span id="LC591" class="line" lang="plaintext">PACKAGE_NAME='libmaus2'</span>
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592
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<pre style="margin: 0;"> <span id="LC592" class="line" lang="plaintext">PACKAGE_TARNAME='libmaus2'</span>
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593
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<pre style="margin: 0;">-<span id="LC593" class="line" lang="plaintext">PACKAGE_VERSION='2.0.65<span class="idiff left right">2</span>'</span>
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<pre style="margin: 0;">-<span id="LC594" class="line" lang="plaintext">PACKAGE_STRING='libmaus2 2.0.65<span class="idiff left right">2</span>'</span>
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593
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<pre style="margin: 0;">+<span id="LC593" class="line" lang="plaintext">PACKAGE_VERSION='2.0.65<span class="idiff left right">6</span>'</span>
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<pre style="margin: 0;">+<span id="LC594" class="line" lang="plaintext">PACKAGE_STRING='libmaus2 2.0.65<span class="idiff left right">6</span>'</span>
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<pre style="margin: 0;"> <span id="LC595" class="line" lang="plaintext">PACKAGE_BUGREPORT='tischler@mpi-cbg.de'</span>
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596
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<pre style="margin: 0;"> <span id="LC596" class="line" lang="plaintext">PACKAGE_URL='https://github.com/gt1/libmaus2'</span>
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597
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<pre style="margin: 0;"> <span id="LC597" class="line" lang="plaintext"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1609,7 +1609,7 @@ if test "$ac_init_help" = "long"; then</td>
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1609
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1609
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<pre style="margin: 0;"> <span id="LC1609" class="line" lang="plaintext"> # Omit some internal or obsolete options to make the list less imposing.</span>
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1610
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1610
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<pre style="margin: 0;"> <span id="LC1610" class="line" lang="plaintext"> # This message is too long to be a string in the A/UX 3.1 sh.</span>
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1611
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1611
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<pre style="margin: 0;"> <span id="LC1611" class="line" lang="plaintext"> cat <<_ACEOF</span>
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1612
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<pre style="margin: 0;">-<span id="LC1612" class="line" lang="plaintext">\`configure' configures libmaus2 2.0.65<span class="idiff left right">2</span> to adapt to many kinds of systems.</span>
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1612
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<pre style="margin: 0;">+<span id="LC1612" class="line" lang="plaintext">\`configure' configures libmaus2 2.0.65<span class="idiff left right">6</span> to adapt to many kinds of systems.</span>
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1613
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1613
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<pre style="margin: 0;"> <span id="LC1613" class="line" lang="plaintext"></span>
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1614
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1614
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<pre style="margin: 0;"> <span id="LC1614" class="line" lang="plaintext">Usage: $0 [OPTION]... [VAR=VALUE]...</span>
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1615
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1615
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<pre style="margin: 0;"> <span id="LC1615" class="line" lang="plaintext"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1681" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1681" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1681,7 +1681,7 @@ fi</td>
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1681
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1681
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<pre style="margin: 0;"> <span id="LC1681" class="line" lang="plaintext"></span>
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1682
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1682
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<pre style="margin: 0;"> <span id="LC1682" class="line" lang="plaintext">if test -n "$ac_init_help"; then</span>
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1683
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1683
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<pre style="margin: 0;"> <span id="LC1683" class="line" lang="plaintext"> case $ac_init_help in</span>
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1684
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<pre style="margin: 0;">-<span id="LC1684" class="line" lang="plaintext"> short | recursive ) echo "Configuration of libmaus2 2.0.65<span class="idiff left right">2</span>:";;</span>
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1684
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<pre style="margin: 0;">+<span id="LC1684" class="line" lang="plaintext"> short | recursive ) echo "Configuration of libmaus2 2.0.65<span class="idiff left right">6</span>:";;</span>
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1685
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1685
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<pre style="margin: 0;"> <span id="LC1685" class="line" lang="plaintext"> esac</span>
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1686
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1686
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<pre style="margin: 0;"> <span id="LC1686" class="line" lang="plaintext"> cat <<\_ACEOF</span>
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1687
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1687
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<pre style="margin: 0;"> <span id="LC1687" class="line" lang="plaintext"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1851" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1851" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1851,7 +1851,7 @@ fi</td>
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1851
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1851
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<pre style="margin: 0;"> <span id="LC1851" class="line" lang="plaintext">test -n "$ac_init_help" && exit $ac_status</span>
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1852
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1852
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<pre style="margin: 0;"> <span id="LC1852" class="line" lang="plaintext">if $ac_init_version; then</span>
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1853
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1853
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<pre style="margin: 0;"> <span id="LC1853" class="line" lang="plaintext"> cat <<\_ACEOF</span>
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<pre style="margin: 0;">-<span id="LC1854" class="line" lang="plaintext">libmaus2 configure 2.0.65<span class="idiff left right">2</span></span>
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<pre style="margin: 0;">+<span id="LC1854" class="line" lang="plaintext">libmaus2 configure 2.0.65<span class="idiff left right">6</span></span>
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<pre style="margin: 0;"> <span id="LC1855" class="line" lang="plaintext">generated by GNU Autoconf 2.69</span>
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<pre style="margin: 0;"> <span id="LC1856" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC1857" class="line" lang="plaintext">Copyright (C) 2012 Free Software Foundation, Inc.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2724,7 +2724,7 @@ cat >config.log <<_ACEOF</td>
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2724
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2724
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<pre style="margin: 0;"> <span id="LC2724" class="line" lang="plaintext">This file contains any messages produced by compilers while</span>
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2725
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<pre style="margin: 0;"> <span id="LC2725" class="line" lang="plaintext">running configure, to aid debugging if configure makes a mistake.</span>
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<pre style="margin: 0;"> <span id="LC2726" class="line" lang="plaintext"></span>
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2727
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<pre style="margin: 0;">-<span id="LC2727" class="line" lang="plaintext">It was created by libmaus2 $as_me 2.0.65<span class="idiff left right">2</span>, which was</span>
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2727
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<pre style="margin: 0;">+<span id="LC2727" class="line" lang="plaintext">It was created by libmaus2 $as_me 2.0.65<span class="idiff left right">6</span>, which was</span>
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2728
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<pre style="margin: 0;"> <span id="LC2728" class="line" lang="plaintext">generated by GNU Autoconf 2.69. Invocation command line was</span>
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2729
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<pre style="margin: 0;"> <span id="LC2729" class="line" lang="plaintext"></span>
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2730
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<pre style="margin: 0;"> <span id="LC2730" class="line" lang="plaintext"> $ $0 $@</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3072,7 +3072,7 @@ ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $</td>
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<pre style="margin: 0;"> <span id="LC3072" class="line" lang="plaintext">ac_compiler_gnu=$ac_cv_c_compiler_gnu</span>
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<pre style="margin: 0;"> <span id="LC3073" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3074" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC3075" class="line" lang="plaintext">LIBRARY_VERSION=2:65<span class="idiff left right">2</span>:0</span>
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<pre style="margin: 0;">+<span id="LC3075" class="line" lang="plaintext">LIBRARY_VERSION=2:65<span class="idiff left right">6</span>:0</span>
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<pre style="margin: 0;"> <span id="LC3076" class="line" lang="plaintext">{ $as_echo "$as_me:${as_lineno-$LINENO}: Configuring for source in directory ${srcdir}" >&5</span>
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3077
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<pre style="margin: 0;"> <span id="LC3077" class="line" lang="plaintext">$as_echo "$as_me: Configuring for source in directory ${srcdir}" >&6;}</span>
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<pre style="margin: 0;"> <span id="LC3078" class="line" lang="plaintext">ac_aux_dir=</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12628,7 +12628,7 @@ fi</td>
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<pre style="margin: 0;"> <span id="LC12628" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12629" class="line" lang="plaintext"># Define the identity of the package.</span>
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<pre style="margin: 0;"> <span id="LC12630" class="line" lang="plaintext"> PACKAGE='libmaus2'</span>
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<pre style="margin: 0;">-<span id="LC12631" class="line" lang="plaintext"> VERSION='2.0.65<span class="idiff left right">2</span>'</span>
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<pre style="margin: 0;">+<span id="LC12631" class="line" lang="plaintext"> VERSION='2.0.65<span class="idiff left right">6</span>'</span>
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12632
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<pre style="margin: 0;"> <span id="LC12632" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12633" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12634" class="line" lang="plaintext">cat >>confdefs.h <<_ACEOF</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="28157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="28157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -28157,7 +28157,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1</td>
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28157
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28157
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<pre style="margin: 0;"> <span id="LC28157" class="line" lang="plaintext"># report actual input values of CONFIG_FILES etc. instead of their</span>
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28158
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28158
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<pre style="margin: 0;"> <span id="LC28158" class="line" lang="plaintext"># values after options handling.</span>
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28159
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<pre style="margin: 0;"> <span id="LC28159" class="line" lang="plaintext">ac_log="</span>
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<pre style="margin: 0;">-<span id="LC28160" class="line" lang="plaintext">This file was extended by libmaus2 $as_me 2.0.65<span class="idiff left right">2</span>, which was</span>
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<pre style="margin: 0;">+<span id="LC28160" class="line" lang="plaintext">This file was extended by libmaus2 $as_me 2.0.65<span class="idiff left right">6</span>, which was</span>
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<pre style="margin: 0;"> <span id="LC28161" class="line" lang="plaintext">generated by GNU Autoconf 2.69. Invocation command line was</span>
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28162
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<pre style="margin: 0;"> <span id="LC28162" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC28163" class="line" lang="plaintext"> CONFIG_FILES = $CONFIG_FILES</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="28224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -28224,7 +28224,7 @@ _ACEOF</td>
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28224
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28224
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<pre style="margin: 0;"> <span id="LC28224" class="line" lang="plaintext">cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1</span>
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28225
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28225
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<pre style="margin: 0;"> <span id="LC28225" class="line" lang="plaintext">ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"</span>
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28226
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28226
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<pre style="margin: 0;"> <span id="LC28226" class="line" lang="plaintext">ac_cs_version="\\</span>
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28227
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<pre style="margin: 0;">-<span id="LC28227" class="line" lang="plaintext">libmaus2 config.status 2.0.65<span class="idiff left right">2</span></span>
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28227
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<pre style="margin: 0;">+<span id="LC28227" class="line" lang="plaintext">libmaus2 config.status 2.0.65<span class="idiff left right">6</span></span>
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28228
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28228
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<pre style="margin: 0;"> <span id="LC28228" class="line" lang="plaintext">configured by $0, generated by GNU Autoconf 2.69,</span>
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28229
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28229
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<pre style="margin: 0;"> <span id="LC28229" class="line" lang="plaintext"> with options \\"\$ac_cs_config\\"</span>
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28230
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28230
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<pre style="margin: 0;"> <span id="LC28230" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#f04a2fa780fab5f9b3c7dc36b8569f0952e719be"><strong>autom4te.cache/output.1</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">@%:@! /bin/sh</span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">@%:@ Guess values for system-dependent variables and create Makefiles.</span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">@%:@ Generated by GNU Autoconf 2.69 for libmaus2 2.0.65<span class="idiff left right">3</span>.</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">@%:@ Generated by GNU Autoconf 2.69 for libmaus2 2.0.65<span class="idiff left right">7</span>.</span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">@%:@</span>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">@%:@ Report bugs to <tischler@mpi-cbg.de>.</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">@%:@ </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -590,8 +590,8 @@ MAKEFLAGS=</td>
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590
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590
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<pre style="margin: 0;"> <span id="LC590" class="line" lang="plaintext"># Identity of this package.</span>
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<pre style="margin: 0;"> <span id="LC591" class="line" lang="plaintext">PACKAGE_NAME='libmaus2'</span>
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<pre style="margin: 0;"> <span id="LC592" class="line" lang="plaintext">PACKAGE_TARNAME='libmaus2'</span>
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<pre style="margin: 0;">-<span id="LC593" class="line" lang="plaintext">PACKAGE_VERSION='2.0.65<span class="idiff left right">3</span>'</span>
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<pre style="margin: 0;">-<span id="LC594" class="line" lang="plaintext">PACKAGE_STRING='libmaus2 2.0.65<span class="idiff left right">3</span>'</span>
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<pre style="margin: 0;">+<span id="LC593" class="line" lang="plaintext">PACKAGE_VERSION='2.0.65<span class="idiff left right">7</span>'</span>
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<pre style="margin: 0;">+<span id="LC594" class="line" lang="plaintext">PACKAGE_STRING='libmaus2 2.0.65<span class="idiff left right">7</span>'</span>
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<pre style="margin: 0;"> <span id="LC595" class="line" lang="plaintext">PACKAGE_BUGREPORT='tischler@mpi-cbg.de'</span>
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<pre style="margin: 0;"> <span id="LC596" class="line" lang="plaintext">PACKAGE_URL='https://github.com/gt1/libmaus2'</span>
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<pre style="margin: 0;"> <span id="LC597" class="line" lang="plaintext"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1609,7 +1609,7 @@ if test "$ac_init_help" = "long"; then</td>
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1609
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1609
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<pre style="margin: 0;"> <span id="LC1609" class="line" lang="plaintext"> # Omit some internal or obsolete options to make the list less imposing.</span>
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<pre style="margin: 0;"> <span id="LC1610" class="line" lang="plaintext"> # This message is too long to be a string in the A/UX 3.1 sh.</span>
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<pre style="margin: 0;"> <span id="LC1611" class="line" lang="plaintext"> cat <<_ACEOF</span>
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<pre style="margin: 0;">-<span id="LC1612" class="line" lang="plaintext">\`configure' configures libmaus2 2.0.65<span class="idiff left right">3</span> to adapt to many kinds of systems.</span>
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<pre style="margin: 0;">+<span id="LC1612" class="line" lang="plaintext">\`configure' configures libmaus2 2.0.65<span class="idiff left right">7</span> to adapt to many kinds of systems.</span>
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<pre style="margin: 0;"> <span id="LC1613" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC1614" class="line" lang="plaintext">Usage: $0 [OPTION]... [VAR=VALUE]...</span>
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<pre style="margin: 0;"> <span id="LC1615" class="line" lang="plaintext"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1681,7 +1681,7 @@ fi</td>
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1681
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<pre style="margin: 0;"> <span id="LC1681" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC1682" class="line" lang="plaintext">if test -n "$ac_init_help"; then</span>
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1683
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1683
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<pre style="margin: 0;"> <span id="LC1683" class="line" lang="plaintext"> case $ac_init_help in</span>
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1684
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<pre style="margin: 0;">-<span id="LC1684" class="line" lang="plaintext"> short | recursive ) echo "Configuration of libmaus2 2.0.65<span class="idiff left right">3</span>:";;</span>
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1684
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<pre style="margin: 0;">+<span id="LC1684" class="line" lang="plaintext"> short | recursive ) echo "Configuration of libmaus2 2.0.65<span class="idiff left right">7</span>:";;</span>
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1685
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<pre style="margin: 0;"> <span id="LC1685" class="line" lang="plaintext"> esac</span>
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1686
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1686
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<pre style="margin: 0;"> <span id="LC1686" class="line" lang="plaintext"> cat <<\_ACEOF</span>
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1687
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1687
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<pre style="margin: 0;"> <span id="LC1687" class="line" lang="plaintext"></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1851" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1851,7 +1851,7 @@ fi</td>
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<pre style="margin: 0;"> <span id="LC1851" class="line" lang="plaintext">test -n "$ac_init_help" && exit $ac_status</span>
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1852
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1852
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<pre style="margin: 0;"> <span id="LC1852" class="line" lang="plaintext">if $ac_init_version; then</span>
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1853
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1853
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<pre style="margin: 0;"> <span id="LC1853" class="line" lang="plaintext"> cat <<\_ACEOF</span>
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<pre style="margin: 0;">-<span id="LC1854" class="line" lang="plaintext">libmaus2 configure 2.0.65<span class="idiff left right">3</span></span>
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<pre style="margin: 0;">+<span id="LC1854" class="line" lang="plaintext">libmaus2 configure 2.0.65<span class="idiff left right">7</span></span>
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<pre style="margin: 0;"> <span id="LC1855" class="line" lang="plaintext">generated by GNU Autoconf 2.69</span>
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1856
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<pre style="margin: 0;"> <span id="LC1856" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC1857" class="line" lang="plaintext">Copyright (C) 2012 Free Software Foundation, Inc.</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2724" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2724,7 +2724,7 @@ cat >config.log <<_ACEOF</td>
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2724
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2724
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<pre style="margin: 0;"> <span id="LC2724" class="line" lang="plaintext">This file contains any messages produced by compilers while</span>
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2725
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2725
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<pre style="margin: 0;"> <span id="LC2725" class="line" lang="plaintext">running configure, to aid debugging if configure makes a mistake.</span>
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2726
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2726
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<pre style="margin: 0;"> <span id="LC2726" class="line" lang="plaintext"></span>
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2727
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<pre style="margin: 0;">-<span id="LC2727" class="line" lang="plaintext">It was created by libmaus2 $as_me 2.0.65<span class="idiff left right">3</span>, which was</span>
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2727
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<pre style="margin: 0;">+<span id="LC2727" class="line" lang="plaintext">It was created by libmaus2 $as_me 2.0.65<span class="idiff left right">7</span>, which was</span>
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2728
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2728
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<pre style="margin: 0;"> <span id="LC2728" class="line" lang="plaintext">generated by GNU Autoconf 2.69. Invocation command line was</span>
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2729
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2729
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<pre style="margin: 0;"> <span id="LC2729" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC2730" class="line" lang="plaintext"> $ $0 $@</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3072,7 +3072,7 @@ ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $</td>
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<pre style="margin: 0;"> <span id="LC3072" class="line" lang="plaintext">ac_compiler_gnu=$ac_cv_c_compiler_gnu</span>
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3073
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<pre style="margin: 0;"> <span id="LC3073" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3074" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC3075" class="line" lang="plaintext">LIBRARY_VERSION=2:65<span class="idiff left right">3</span>:0</span>
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<pre style="margin: 0;">+<span id="LC3075" class="line" lang="plaintext">LIBRARY_VERSION=2:65<span class="idiff left right">7</span>:0</span>
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<pre style="margin: 0;"> <span id="LC3076" class="line" lang="plaintext">{ $as_echo "$as_me:${as_lineno-$LINENO}: Configuring for source in directory ${srcdir}" >&5</span>
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<pre style="margin: 0;"> <span id="LC3077" class="line" lang="plaintext">$as_echo "$as_me: Configuring for source in directory ${srcdir}" >&6;}</span>
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<pre style="margin: 0;"> <span id="LC3078" class="line" lang="plaintext">ac_aux_dir=</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12628,7 +12628,7 @@ fi</td>
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<pre style="margin: 0;"> <span id="LC12628" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12629" class="line" lang="plaintext"># Define the identity of the package.</span>
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<pre style="margin: 0;"> <span id="LC12630" class="line" lang="plaintext"> PACKAGE='libmaus2'</span>
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<pre style="margin: 0;">-<span id="LC12631" class="line" lang="plaintext"> VERSION='2.0.65<span class="idiff left right">3</span>'</span>
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<pre style="margin: 0;">+<span id="LC12631" class="line" lang="plaintext"> VERSION='2.0.65<span class="idiff left right">7</span>'</span>
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<pre style="margin: 0;"> <span id="LC12632" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12633" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12634" class="line" lang="plaintext">cat >>confdefs.h <<_ACEOF</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -28157,7 +28157,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1</td>
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<pre style="margin: 0;"> <span id="LC28157" class="line" lang="plaintext"># report actual input values of CONFIG_FILES etc. instead of their</span>
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28158
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<pre style="margin: 0;"> <span id="LC28158" class="line" lang="plaintext"># values after options handling.</span>
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28159
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<pre style="margin: 0;"> <span id="LC28159" class="line" lang="plaintext">ac_log="</span>
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<pre style="margin: 0;">-<span id="LC28160" class="line" lang="plaintext">This file was extended by libmaus2 $as_me 2.0.65<span class="idiff left right">3</span>, which was</span>
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<pre style="margin: 0;">+<span id="LC28160" class="line" lang="plaintext">This file was extended by libmaus2 $as_me 2.0.65<span class="idiff left right">7</span>, which was</span>
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<pre style="margin: 0;"> <span id="LC28161" class="line" lang="plaintext">generated by GNU Autoconf 2.69. Invocation command line was</span>
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<pre style="margin: 0;"> <span id="LC28162" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC28163" class="line" lang="plaintext"> CONFIG_FILES = $CONFIG_FILES</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -28224,7 +28224,7 @@ _ACEOF</td>
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<pre style="margin: 0;"> <span id="LC28224" class="line" lang="plaintext">cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1</span>
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<pre style="margin: 0;"> <span id="LC28225" class="line" lang="plaintext">ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"</span>
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<pre style="margin: 0;"> <span id="LC28226" class="line" lang="plaintext">ac_cs_version="\\</span>
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<pre style="margin: 0;">-<span id="LC28227" class="line" lang="plaintext">libmaus2 config.status 2.0.65<span class="idiff left right">3</span></span>
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<pre style="margin: 0;">+<span id="LC28227" class="line" lang="plaintext">libmaus2 config.status 2.0.65<span class="idiff left right">7</span></span>
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<pre style="margin: 0;"> <span id="LC28228" class="line" lang="plaintext">configured by $0, generated by GNU Autoconf 2.69,</span>
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<pre style="margin: 0;"> <span id="LC28229" class="line" lang="plaintext"> with options \\"\$ac_cs_config\\"</span>
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<pre style="margin: 0;"> <span id="LC28230" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#418e6ff6d249ab486b581375a60abfa5e5cb9548"><strong>autom4te.cache/output.2</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">@%:@! /bin/sh</span>
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2
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">@%:@ Guess values for system-dependent variables and create Makefiles.</span>
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3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext">@%:@ Generated by GNU Autoconf 2.69 for libmaus2 2.0.65<span class="idiff left right">3</span>.</span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">@%:@ Generated by GNU Autoconf 2.69 for libmaus2 2.0.65<span class="idiff left right">7</span>.</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">@%:@</span>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">@%:@ Report bugs to <tischler@mpi-cbg.de>.</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">@%:@ </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -590,8 +590,8 @@ MAKEFLAGS=</td>
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590
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<pre style="margin: 0;"> <span id="LC590" class="line" lang="plaintext"># Identity of this package.</span>
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591
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<pre style="margin: 0;"> <span id="LC591" class="line" lang="plaintext">PACKAGE_NAME='libmaus2'</span>
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592
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592
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<pre style="margin: 0;"> <span id="LC592" class="line" lang="plaintext">PACKAGE_TARNAME='libmaus2'</span>
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593
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<pre style="margin: 0;">-<span id="LC593" class="line" lang="plaintext">PACKAGE_VERSION='2.0.65<span class="idiff left right">3</span>'</span>
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594
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<pre style="margin: 0;">-<span id="LC594" class="line" lang="plaintext">PACKAGE_STRING='libmaus2 2.0.65<span class="idiff left right">3</span>'</span>
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<pre style="margin: 0;">+<span id="LC593" class="line" lang="plaintext">PACKAGE_VERSION='2.0.65<span class="idiff left right">7</span>'</span>
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<pre style="margin: 0;">+<span id="LC594" class="line" lang="plaintext">PACKAGE_STRING='libmaus2 2.0.65<span class="idiff left right">7</span>'</span>
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595
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595
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<pre style="margin: 0;"> <span id="LC595" class="line" lang="plaintext">PACKAGE_BUGREPORT='tischler@mpi-cbg.de'</span>
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596
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<pre style="margin: 0;"> <span id="LC596" class="line" lang="plaintext">PACKAGE_URL='https://github.com/gt1/libmaus2'</span>
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597
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<pre style="margin: 0;"> <span id="LC597" class="line" lang="plaintext"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1609,7 +1609,7 @@ if test "$ac_init_help" = "long"; then</td>
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1609
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1609
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<pre style="margin: 0;"> <span id="LC1609" class="line" lang="plaintext"> # Omit some internal or obsolete options to make the list less imposing.</span>
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1610
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1610
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<pre style="margin: 0;"> <span id="LC1610" class="line" lang="plaintext"> # This message is too long to be a string in the A/UX 3.1 sh.</span>
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1611
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1611
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<pre style="margin: 0;"> <span id="LC1611" class="line" lang="plaintext"> cat <<_ACEOF</span>
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1612
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<pre style="margin: 0;">-<span id="LC1612" class="line" lang="plaintext">\`configure' configures libmaus2 2.0.65<span class="idiff left right">3</span> to adapt to many kinds of systems.</span>
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1612
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<pre style="margin: 0;">+<span id="LC1612" class="line" lang="plaintext">\`configure' configures libmaus2 2.0.65<span class="idiff left right">7</span> to adapt to many kinds of systems.</span>
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1613
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1613
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<pre style="margin: 0;"> <span id="LC1613" class="line" lang="plaintext"></span>
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1614
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1614
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<pre style="margin: 0;"> <span id="LC1614" class="line" lang="plaintext">Usage: $0 [OPTION]... [VAR=VALUE]...</span>
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1615
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1615
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<pre style="margin: 0;"> <span id="LC1615" class="line" lang="plaintext"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1681" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1681" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1681,7 +1681,7 @@ fi</td>
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1681
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1681
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<pre style="margin: 0;"> <span id="LC1681" class="line" lang="plaintext"></span>
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1682
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1682
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<pre style="margin: 0;"> <span id="LC1682" class="line" lang="plaintext">if test -n "$ac_init_help"; then</span>
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1683
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1683
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<pre style="margin: 0;"> <span id="LC1683" class="line" lang="plaintext"> case $ac_init_help in</span>
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1684
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<pre style="margin: 0;">-<span id="LC1684" class="line" lang="plaintext"> short | recursive ) echo "Configuration of libmaus2 2.0.65<span class="idiff left right">3</span>:";;</span>
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1684
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<pre style="margin: 0;">+<span id="LC1684" class="line" lang="plaintext"> short | recursive ) echo "Configuration of libmaus2 2.0.65<span class="idiff left right">7</span>:";;</span>
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1685
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1685
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<pre style="margin: 0;"> <span id="LC1685" class="line" lang="plaintext"> esac</span>
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1686
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1686
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<pre style="margin: 0;"> <span id="LC1686" class="line" lang="plaintext"> cat <<\_ACEOF</span>
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1687
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1687
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<pre style="margin: 0;"> <span id="LC1687" class="line" lang="plaintext"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1851" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1851" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1851,7 +1851,7 @@ fi</td>
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1851
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1851
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<pre style="margin: 0;"> <span id="LC1851" class="line" lang="plaintext">test -n "$ac_init_help" && exit $ac_status</span>
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1852
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1852
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<pre style="margin: 0;"> <span id="LC1852" class="line" lang="plaintext">if $ac_init_version; then</span>
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1853
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1853
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<pre style="margin: 0;"> <span id="LC1853" class="line" lang="plaintext"> cat <<\_ACEOF</span>
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<pre style="margin: 0;">-<span id="LC1854" class="line" lang="plaintext">libmaus2 configure 2.0.65<span class="idiff left right">3</span></span>
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<pre style="margin: 0;">+<span id="LC1854" class="line" lang="plaintext">libmaus2 configure 2.0.65<span class="idiff left right">7</span></span>
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<pre style="margin: 0;"> <span id="LC1855" class="line" lang="plaintext">generated by GNU Autoconf 2.69</span>
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<pre style="margin: 0;"> <span id="LC1856" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC1857" class="line" lang="plaintext">Copyright (C) 2012 Free Software Foundation, Inc.</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2724,7 +2724,7 @@ cat >config.log <<_ACEOF</td>
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2724
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2724
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<pre style="margin: 0;"> <span id="LC2724" class="line" lang="plaintext">This file contains any messages produced by compilers while</span>
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2725
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<pre style="margin: 0;"> <span id="LC2725" class="line" lang="plaintext">running configure, to aid debugging if configure makes a mistake.</span>
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<pre style="margin: 0;"> <span id="LC2726" class="line" lang="plaintext"></span>
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2727
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<pre style="margin: 0;">-<span id="LC2727" class="line" lang="plaintext">It was created by libmaus2 $as_me 2.0.65<span class="idiff left right">3</span>, which was</span>
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2727
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<pre style="margin: 0;">+<span id="LC2727" class="line" lang="plaintext">It was created by libmaus2 $as_me 2.0.65<span class="idiff left right">7</span>, which was</span>
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2728
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<pre style="margin: 0;"> <span id="LC2728" class="line" lang="plaintext">generated by GNU Autoconf 2.69. Invocation command line was</span>
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2729
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<pre style="margin: 0;"> <span id="LC2729" class="line" lang="plaintext"></span>
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2730
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<pre style="margin: 0;"> <span id="LC2730" class="line" lang="plaintext"> $ $0 $@</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3072,7 +3072,7 @@ ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $</td>
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<pre style="margin: 0;"> <span id="LC3072" class="line" lang="plaintext">ac_compiler_gnu=$ac_cv_c_compiler_gnu</span>
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<pre style="margin: 0;"> <span id="LC3073" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC3074" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC3075" class="line" lang="plaintext">LIBRARY_VERSION=2:65<span class="idiff left right">3</span>:0</span>
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<pre style="margin: 0;">+<span id="LC3075" class="line" lang="plaintext">LIBRARY_VERSION=2:65<span class="idiff left right">7</span>:0</span>
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<pre style="margin: 0;"> <span id="LC3076" class="line" lang="plaintext">{ $as_echo "$as_me:${as_lineno-$LINENO}: Configuring for source in directory ${srcdir}" >&5</span>
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3077
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<pre style="margin: 0;"> <span id="LC3077" class="line" lang="plaintext">$as_echo "$as_me: Configuring for source in directory ${srcdir}" >&6;}</span>
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<pre style="margin: 0;"> <span id="LC3078" class="line" lang="plaintext">ac_aux_dir=</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12628,7 +12628,7 @@ fi</td>
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<pre style="margin: 0;"> <span id="LC12628" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12629" class="line" lang="plaintext"># Define the identity of the package.</span>
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<pre style="margin: 0;"> <span id="LC12630" class="line" lang="plaintext"> PACKAGE='libmaus2'</span>
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<pre style="margin: 0;">-<span id="LC12631" class="line" lang="plaintext"> VERSION='2.0.65<span class="idiff left right">3</span>'</span>
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<pre style="margin: 0;">+<span id="LC12631" class="line" lang="plaintext"> VERSION='2.0.65<span class="idiff left right">7</span>'</span>
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<pre style="margin: 0;"> <span id="LC12632" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12633" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC12634" class="line" lang="plaintext">cat >>confdefs.h <<_ACEOF</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="28157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -28157,7 +28157,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1</td>
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28157
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<pre style="margin: 0;"> <span id="LC28157" class="line" lang="plaintext"># report actual input values of CONFIG_FILES etc. instead of their</span>
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28158
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<pre style="margin: 0;"> <span id="LC28158" class="line" lang="plaintext"># values after options handling.</span>
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28159
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<pre style="margin: 0;"> <span id="LC28159" class="line" lang="plaintext">ac_log="</span>
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<pre style="margin: 0;">-<span id="LC28160" class="line" lang="plaintext">This file was extended by libmaus2 $as_me 2.0.65<span class="idiff left right">3</span>, which was</span>
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<pre style="margin: 0;">+<span id="LC28160" class="line" lang="plaintext">This file was extended by libmaus2 $as_me 2.0.65<span class="idiff left right">7</span>, which was</span>
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<pre style="margin: 0;"> <span id="LC28161" class="line" lang="plaintext">generated by GNU Autoconf 2.69. Invocation command line was</span>
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28162
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<pre style="margin: 0;"> <span id="LC28162" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC28163" class="line" lang="plaintext"> CONFIG_FILES = $CONFIG_FILES</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="28224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -28224,7 +28224,7 @@ _ACEOF</td>
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28224
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28224
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<pre style="margin: 0;"> <span id="LC28224" class="line" lang="plaintext">cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1</span>
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28225
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28225
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<pre style="margin: 0;"> <span id="LC28225" class="line" lang="plaintext">ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"</span>
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28226
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28226
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<pre style="margin: 0;"> <span id="LC28226" class="line" lang="plaintext">ac_cs_version="\\</span>
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28227
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<pre style="margin: 0;">-<span id="LC28227" class="line" lang="plaintext">libmaus2 config.status 2.0.65<span class="idiff left right">3</span></span>
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<pre style="margin: 0;">+<span id="LC28227" class="line" lang="plaintext">libmaus2 config.status 2.0.65<span class="idiff left right">7</span></span>
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28228
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28228
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<pre style="margin: 0;"> <span id="LC28228" class="line" lang="plaintext">configured by $0, generated by GNU Autoconf 2.69,</span>
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28229
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28229
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<pre style="margin: 0;"> <span id="LC28229" class="line" lang="plaintext"> with options \\"\$ac_cs_config\\"</span>
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28230
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<pre style="margin: 0;"> <span id="LC28230" class="line" lang="plaintext"></span>
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<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#931f2452d79a9fde0c930f26bdfd1016cb237b0e"><strong>autom4te.cache/requests</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -44,198 +44,198 @@</td>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> 'configure.ac'</span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> ],</span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> {</span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="plaintext"> '_LT_AC_LOCK' => 1,</span>
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<pre style="margin: 0;">-<span id="LC48" class="line" lang="plaintext"> 'AM_SET_LEADING_DOT' => 1,</span>
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49
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="plaintext"> 'LT_OUTPUT' => 1,</span>
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50
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<pre style="margin: 0;">-<span id="LC50" class="line" lang="plaintext"> '_LTDL_SETUP' => 1,</span>
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51
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<pre style="margin: 0;">-<span id="LC51" class="line" lang="plaintext"> 'AM_AUX_DIR_EXPAND' => 1,</span>
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52
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="plaintext"> 'AC_DISABLE_STATIC' => 1,</span>
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> 'PKG_CHECK_VAR' => 1,</span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> 'AM_SANITY_CHECK' => 1,</span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> '_LT_AC_LANG_F77_CONFIG' => 1,</span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext"> 'AM_RUN_LOG' => 1,</span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> 'AC_LIBTOOL_PROG_LD_SHLIBS' => 1,</span>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> 'AC_LTDL_DLSYM_USCORE' => 1,</span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext"> 'LT_SYS_SYMBOL_USCORE' => 1,</span>
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53
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="plaintext"> 'AC_ENABLE_STATIC' => 1,</span>
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54
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="plaintext"> '<span class="idiff left right">AC_PATH_TOOL_PREFIX</span>' => 1,</span>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="plaintext"> '<span class="idiff left right">LTVERSION_VERSION</span>' => 1,</span>
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55
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<td class="diff-line-num new_line" data-linenumber="56" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
56
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="plaintext"> 'AM_ENABLE_STATIC' => 1,</span>
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56
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<pre style="margin: 0;">-<span id="LC56" class="line" lang="plaintext"> '_LT_AC_PROG_CXXCPP' => 1,</span>
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57
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="plaintext"> '_LT_LIBOBJ' => 1,</span>
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58
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext"> '_m4_warn' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
59
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="plaintext"> 'AM_PROG_CC_C_O' => 1,</span>
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60
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="plaintext"> 'AM_PROG_LIBTOOL' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="61" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
61
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="plaintext"> '_LT_AC_LANG_GCJ_CONFIG' => 1,</span>
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62
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="plaintext"> 'LT_LIB_DLLOAD' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="63" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
63
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="plaintext"> 'AM_PROG_LD' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="64" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
64
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<td class="diff-line-num new_line old" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="plaintext"> 'LT_PROG_GCJ' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
65
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<td class="diff-line-num new_line old" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="plaintext"> 'AC_PATH_MAGIC' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
66
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<td class="diff-line-num new_line old" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="plaintext"> 'AC_LIBTOOL_LANG_CXX_CONFIG' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="67" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
67
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<td class="diff-line-num new_line old" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="plaintext"> '_LT_AC_LANG_C_CONFIG' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
68
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<td class="diff-line-num new_line old" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC68" class="line" lang="plaintext"> 'AC_PROG_LD_GNU' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
69
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<td class="diff-line-num new_line old" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="plaintext"> '_LT_AC_LANG_GCJ' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="70" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
70
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<td class="diff-line-num new_line old" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="plaintext"> 'AC_CHECK_LIBM' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
71
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<pre style="margin: 0;">-<span id="LC71" class="line" lang="plaintext"> 'AC_DISABLE_SHARED' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="72" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
72
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<td class="diff-line-num new_line old" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="plaintext"> '_AM_CONFIG_MACRO_DIRS' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
73
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<td class="diff-line-num new_line old" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="plaintext"> 'LT_PROG_GO' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
74
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<td class="diff-line-num new_line old" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="plaintext"> 'AM_RUN_LOG' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
75
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<td class="diff-line-num new_line old" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC75" class="line" lang="plaintext"> 'AC_LTDL_PREOPEN' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
76
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<td class="diff-line-num new_line old" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="plaintext"> '_LT_AC_PROG_ECHO_BACKSLASH' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="plaintext"> 'AC_LIBTOOL_PROG_COMPILER_NO_RTTI' => 1,</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="77" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
77
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<td class="diff-line-num new_line" data-linenumber="58" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
58
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC58" class="line" lang="plaintext"> 'AM_PROG_CC_STDC' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="78" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
78
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<td class="diff-line-num new_line old" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="plaintext"> 'AC_LIBTOOL_SYS_LIB_STRIP' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="79" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
79
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<td class="diff-line-num new_line old" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="plaintext"> '_LT_AC_TRY_DLOPEN_SELF' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="80" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
80
</td>
<td class="diff-line-num new_line old" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="plaintext"> 'AC_LIBTOOL_GCJ' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
81
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<td class="diff-line-num new_line old" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="plaintext"> 'AC_LIBLTDL_CONVENIENCE' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="82" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
82
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<td class="diff-line-num new_line old" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC82" class="line" lang="plaintext"> 'AC_PROG_NM' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
83
</td>
<td class="diff-line-num new_line old" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="plaintext"> 'AM_DISABLE_STATIC' => 1,</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
84
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<td class="diff-line-num new_line old" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="plaintext"> 'AC_LIBTOOL_SYS_DYNAMIC_LINKER' => 1,</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="59" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
59
</td>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="plaintext"> '_AM_OUTPUT_DEPENDENCY_COMMANDS' => 1,</span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="60" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
60
</td>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="plaintext"> 'fp_C_PROTOTYPES' => 1,</span>
</pre>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="plaintext"> 'PKG_INSTALLDIR' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="62" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="plaintext"> 'AC_LIB_LTDL' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="63" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="plaintext"> '_LT_DLL_DEF_P' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="64" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="plaintext"> 'LTDL_INIT' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="65" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="plaintext"> '_LT_COMPILER_OPTION' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="plaintext"> 'LT_SYS_DLSEARCH_PATH' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="67" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="plaintext"> 'AC_LTDL_SHLIBPATH' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="68" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="plaintext"> 'AM_ENABLE_SHARED' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="plaintext"> 'AM_CONDITIONAL' => 1,</span>
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<td class="diff-line-num old_line" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
85
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<td class="diff-line-num new_line" data-linenumber="70" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
70
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="plaintext"> 'AM_MISSING_HAS_RUN' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
86
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<td class="diff-line-num new_line old" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="plaintext"> 'AC_CONFIG_MACRO_DIR' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
87
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="plaintext"> 'AM_C_PROTOTYPES' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
88
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<td class="diff-line-num new_line old" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="plaintext"> 'AC_LIBTOOL_SYS_MAX_CMD_LEN' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
89
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<td class="diff-line-num new_line old" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="plaintext"> 'LTOBSOLETE_VERSION' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
90
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<td class="diff-line-num new_line old" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="plaintext"> 'AC_ENABLE_SHARED' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
91
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<td class="diff-line-num new_line old" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC91" class="line" lang="plaintext"> '_LT_PROG_ECHO_BACKSLASH' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
92
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<td class="diff-line-num new_line old" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC92" class="line" lang="plaintext"> 'AC_PROG_LD_RELOAD_FLAG' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="71" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="plaintext"> 'AC_LIBTOOL_FC' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="72" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="plaintext"> 'PKG_PROG_PKG_CONFIG' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="73" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="plaintext"> 'LT_INIT' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="74" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="plaintext"> 'LT_SUPPORTED_TAG' => 1,</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
93
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<td class="diff-line-num new_line" data-linenumber="75" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
75
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="plaintext"> 'AC_LIBTOOL_PROG_LD_HARDCODE_LIBPATH' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
94
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<td class="diff-line-num new_line old" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC94" class="line" lang="plaintext"> 'LTVERSION_VERSION' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
95
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<td class="diff-line-num new_line old" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="plaintext"> '_LT_COMPILER_BOILERPLATE' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
96
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<td class="diff-line-num new_line old" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC96" class="line" lang="plaintext"> '_LT_PROG_F77' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
97
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<td class="diff-line-num new_line old" data-linenumber="76" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC97" class="line" lang="plaintext"> 'AC_CONFIG_MACRO_DIR_TRACE' => 1,</span>
</pre>
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98
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<pre style="margin: 0;">-<span id="LC98" class="line" lang="plaintext"> '_LT_AC_LANG_RC_CONFIG' => 1,</span>
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99
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<pre style="margin: 0;">-<span id="LC99" class="line" lang="plaintext"> 'LT_PATH_NM' => 1,</span>
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100
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="plaintext"> 'AC_LIBTOOL_CONFIG' => 1,</span>
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101
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<pre style="margin: 0;">-<span id="LC101" class="line" lang="plaintext"> 'AC_LIBTOOL_PROG_COMPILER_PIC' => 1,</span>
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102
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<pre style="margin: 0;">-<span id="LC102" class="line" lang="plaintext"> 'm4_pattern_allow' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
103
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<pre style="margin: 0;">-<span id="LC103" class="line" lang="plaintext"> '_LT_REQUIRED_DARWIN_CHECKS' => 1,</span>
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104
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<pre style="margin: 0;">-<span id="LC104" class="line" lang="plaintext"> '_LT_AC_LANG_CXX' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
105
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="plaintext"> '_LT_PREPARE_SED_QUOTE_VARS' => 1,</span>
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106
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<pre style="margin: 0;">-<span id="LC106" class="line" lang="plaintext"> 'PKG_CHECK_EXISTS' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
107
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<pre style="margin: 0;">-<span id="LC107" class="line" lang="plaintext"> 'AC_DEPLIBS_CHECK_METHOD' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
108
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<pre style="margin: 0;">-<span id="LC108" class="line" lang="plaintext"> 'AC_LIBTOOL_LANG_C_CONFIG' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
109
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<pre style="margin: 0;">-<span id="LC109" class="line" lang="plaintext"> 'LTDL_INIT' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
110
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<pre style="margin: 0;">-<span id="LC110" class="line" lang="plaintext"> 'LT_SYS_DLOPEN_DEPLIBS' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
111
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="plaintext"> 'LT_FUNC_DLSYM_USCORE' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
112
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<pre style="margin: 0;">-<span id="LC112" class="line" lang="plaintext"> 'AC_PROG_LD' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
113
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<pre style="margin: 0;">-<span id="LC113" class="line" lang="plaintext"> 'AM_DISABLE_SHARED' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
114
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="plaintext"> 'AC_LIBTOOL_PROG_CC_C_O' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="plaintext"> 'include' => 1,</span>
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115
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77
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="plaintext"> '_AM_PROG_TAR' => 1,</span>
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116
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<pre style="margin: 0;">-<span id="LC116" class="line" lang="plaintext"> '<span class="idiff left right">PKG_INSTALLDIR</span>' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
117
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<pre style="margin: 0;">-<span id="LC117" class="line" lang="plaintext"> '<span class="idiff left right">_LT_PROG_CXX</span>' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
118
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<pre style="margin: 0;">-<span id="LC118" class="line" lang="plaintext"> '_<span class="idiff left right">AC_AM_CONFIG_HEADER_HOOK</span>' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
119
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<pre style="margin: 0;">-<span id="LC119" class="line" lang="plaintext"> '<span class="idiff left right">LT_INIT</span>' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="plaintext"> '<span class="idiff left right">AC_LIBTOOL_RC</span>' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="120" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="79" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="plaintext"> '<span class="idiff left right">AC_PROG_LD</span>' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="80" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="plaintext"> '_<span class="idiff left right">LT_LIBOBJ</span>' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="81" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="plaintext"> '<span class="idiff left right">_LT_PREPARE_SED_QUOTE_VARS</span>' => 1,</span>
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120
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<td class="diff-line-num new_line" data-linenumber="82" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
82
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="plaintext"> 'LT_FUNC_ARGZ' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="plaintext"> 'PKG_CHECK_MODULES' => 1,</span>
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<td class="diff-line-num old_line" data-linenumber="121" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
121
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<td class="diff-line-num new_line" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
84
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="plaintext"> 'AC_LIBTOOL_COMPILER_OPTION' => 1,</span>
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122
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<td class="diff-line-num new_line old" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC122" class="line" lang="plaintext"> '_LT_AC_SYS_COMPILER' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="123" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
123
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<td class="diff-line-num new_line old" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC123" class="line" lang="plaintext"> 'LTDL_INSTALLABLE' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="plaintext"> 'LT_WITH_LTDL' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="plaintext"> 'AC_LIBTOOL_DLOPEN' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="plaintext"> 'AM_DISABLE_SHARED' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="88" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="plaintext"> '_LT_AC_LANG_C_CONFIG' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="plaintext"> 'AC_DISABLE_SHARED' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="90" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="plaintext"> 'AC_LIBTOOL_SYS_OLD_ARCHIVE' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="91" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="plaintext"> 'm4_include' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="plaintext"> 'LTSUGAR_VERSION' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="93" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="plaintext"> 'AM_PROG_LIBTOOL' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="plaintext"> 'PKG_CHECK_MODULES_STATIC' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="plaintext"> 'AM_OUTPUT_DEPENDENCY_COMMANDS' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="plaintext"> 'LT_LIB_M' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="plaintext"> 'AM_PROG_CC_C_O' => 1,</span>
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<td class="diff-line-num old_line" data-linenumber="124" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
124
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<td class="diff-line-num new_line" data-linenumber="98" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
98
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<pre style="margin: 0;"> <span id="LC98" class="line" lang="plaintext"> '_AC_PROG_LIBTOOL' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
125
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<td class="diff-line-num new_line old" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC125" class="line" lang="plaintext"> '_LT_AC_LANG_F77_CONFIG' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="126" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
126
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<td class="diff-line-num new_line old" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC126" class="line" lang="plaintext"> 'm4_pattern_forbid' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="127" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
127
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<td class="diff-line-num new_line old" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC127" class="line" lang="plaintext"> 'AC_LIBTOOL_WIN32_DLL' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="128" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
128
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<td class="diff-line-num new_line old" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC128" class="line" lang="plaintext"> 'AM_PROG_INSTALL_SH' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="plaintext"> '_LT_AC_FILE_LTDLL_C' => 1,</span>
</pre>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="plaintext"> 'AM_SET_DEPDIR' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="plaintext"> 'AM_SUBST_NOTMAKE' => 1,</span>
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129
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102
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<pre style="margin: 0;"> <span id="LC102" class="line" lang="plaintext"> '_LT_CC_BASENAME' => 1,</span>
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130
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<pre style="margin: 0;">-<span id="LC130" class="line" lang="plaintext"> 'AC_LTDL_DLSYM_USCORE' => 1,</span>
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131
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<pre style="margin: 0;">-<span id="LC131" class="line" lang="plaintext"> 'PKG_PROG_PKG_CONFIG' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="132" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
132
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<pre style="margin: 0;">-<span id="LC132" class="line" lang="plaintext"> '_AM_DEPENDENCIES' => 1,</span>
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<td class="diff-line-num old_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
133
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103
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="plaintext"> 'AC_LIBTOOL_F77' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
134
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<pre style="margin: 0;">-<span id="LC134" class="line" lang="plaintext"> 'AC_LTDL_SHLIBEXT' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
135
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<pre style="margin: 0;">-<span id="LC135" class="line" lang="plaintext"> '_AM_SET_OPTION' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
136
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<pre style="margin: 0;">-<span id="LC136" class="line" lang="plaintext"> 'AC_LTDL_OBJDIR' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
137
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<pre style="margin: 0;">-<span id="LC137" class="line" lang="plaintext"> 'AC_LIBTOOL_PROG_LD_SHLIBS' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
138
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<pre style="margin: 0;">-<span id="LC138" class="line" lang="plaintext"> 'AC_LIBTOOL_LINKER_OPTION' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
139
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<pre style="margin: 0;">-<span id="LC139" class="line" lang="plaintext"> 'LT_AC_PROG_SED' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
140
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<pre style="margin: 0;">-<span id="LC140" class="line" lang="plaintext"> 'AC_LTDL_DLLIB' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
141
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<pre style="margin: 0;">-<span id="LC141" class="line" lang="plaintext"> '_LT_AC_SHELL_INIT' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="142" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
142
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<pre style="margin: 0;">-<span id="LC142" class="line" lang="plaintext"> 'LTOPTIONS_VERSION' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
143
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<pre style="margin: 0;">-<span id="LC143" class="line" lang="plaintext"> '_LT_LINKER_BOILERPLATE' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
144
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="plaintext"> 'AM_MAKE_INCLUDE' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="plaintext"> '_LT_PROG_CXX' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="plaintext"> 'AC_LTDL_SYSSEARCHPATH' => 1,</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
145
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<td class="diff-line-num new_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
106
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="plaintext"> 'AC_PROG_LIBTOOL' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
146
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<td class="diff-line-num new_line old" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC146" class="line" lang="plaintext"> 'LT_AC_PROG_GCJ' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
147
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<pre style="margin: 0;">-<span id="LC147" class="line" lang="plaintext"> 'AC_PROG_EGREP' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
148
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<pre style="margin: 0;">-<span id="LC148" class="line" lang="plaintext"> '_AM_SET_OPTIONS' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
149
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<td class="diff-line-num new_line old" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC149" class="line" lang="plaintext"> 'AC_LIBTOOL_PICMODE' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="150" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
150
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<pre style="margin: 0;">-<span id="LC150" class="line" lang="plaintext"> 'LT_AC_PROG_RC' => 1,</span>
</pre>
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151
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<pre style="margin: 0;">-<span id="LC151" class="line" lang="plaintext"> 'LT_CMD_MAX_LEN' => 1,</span>
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152
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<pre style="margin: 0;">-<span id="LC152" class="line" lang="plaintext"> 'AC_LIBTOOL_LANG_F77_CONFIG' => 1,</span>
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153
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<pre style="margin: 0;">-<span id="LC153" class="line" lang="plaintext"> '_LT_AC_LANG_CXX_CONFIG' => 1,</span>
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154
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<pre style="margin: 0;">-<span id="LC154" class="line" lang="plaintext"> '_LT_PROG_LTMAIN' => 1,</span>
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155
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<pre style="margin: 0;">-<span id="LC155" class="line" lang="plaintext"> '_AM_PROG_CC_C_O' => 1,</span>
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156
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="plaintext"> 'include' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
157
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<pre style="margin: 0;">-<span id="LC157" class="line" lang="plaintext"> 'AC_LIBTOOL_LANG_RC_CONFIG' => 1,</span>
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158
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<pre style="margin: 0;">-<span id="LC158" class="line" lang="plaintext"> 'AC_LIBTOOL_DLOPEN_SELF' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
159
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<pre style="margin: 0;">-<span id="LC159" class="line" lang="plaintext"> 'AM_AUTOMAKE_VERSION' => 1,</span>
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160
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<pre style="margin: 0;">-<span id="LC160" class="line" lang="plaintext"> 'LT_SUPPORTED_TAG' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
161
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<pre style="margin: 0;">-<span id="LC161" class="line" lang="plaintext"> 'AX_OPENMP' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
162
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<pre style="margin: 0;">-<span id="LC162" class="line" lang="plaintext"> 'AM_SUBST_NOTMAKE' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
163
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<pre style="margin: 0;">-<span id="LC163" class="line" lang="plaintext"> 'AC_LIBLTDL_INSTALLABLE' => 1,</span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="plaintext"> '_LT_AC_LANG_GCJ' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="plaintext"> 'AC_PROG_NM' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="plaintext"> '_LT_WITH_SYSROOT' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="plaintext"> 'AC_DISABLE_STATIC' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="plaintext"> 'AC_DEPLIBS_CHECK_METHOD' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="plaintext"> 'AC_LIBTOOL_WIN32_DLL' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="plaintext"> '_AM_DEPENDENCIES' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="plaintext"> 'AM_PROG_INSTALL_STRIP' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="plaintext"> 'AC_LIBTOOL_CXX' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="116" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="plaintext"> '_AC_AM_CONFIG_HEADER_HOOK' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="plaintext"> 'LT_PROG_GCJ' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="plaintext"> 'AC_LIBTOOL_GCJ' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="plaintext"> '_LT_LINKER_OPTION' => 1,</span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="plaintext"> '_LT_AC_LOCK' => 1,</span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="plaintext"> 'LTOBSOLETE_VERSION' => 1,</span>
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122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="plaintext"> 'AC_LTDL_OBJDIR' => 1,</span>
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123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="plaintext"> 'AM_SILENT_RULES' => 1,</span>
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164
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124
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<pre style="margin: 0;"> <span id="LC124" class="line" lang="plaintext"> 'AM_PROG_NM' => 1,</span>
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165
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<pre style="margin: 0;">-<span id="LC165" class="line" lang="plaintext"> '<span class="idiff left right">PKG_CHECK_VAR</span>' => 1,</span>
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166
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<pre style="margin: 0;">-<span id="LC166" class="line" lang="plaintext"> '<span class="idiff left right">AM_CONDITIONAL</span>' => 1,</span>
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167
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<pre style="margin: 0;">-<span id="LC167" class="line" lang="plaintext"> '_LT_<span class="idiff left right">PROG_FC</span>' => 1,</span>
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125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="plaintext"> '<span class="idiff left right">AC_ENABLE_FAST_INSTALL</span>' => 1,</span>
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126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="plaintext"> '<span class="idiff left right">_LT_PROG_ECHO_BACKSLASH</span>' => 1,</span>
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127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="plaintext"> '_LT_<span class="idiff left right">AC_LANG_GCJ_CONFIG</span>' => 1,</span>
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168
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128
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="plaintext"> 'AC_LIBTOOL_POSTDEP_PREDEP' => 1,</span>
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169
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<pre style="margin: 0;">-<span id="LC169" class="line" lang="plaintext"> '_LT_AC_TAGVAR' => 1,</span>
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170
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<pre style="margin: 0;">-<span id="LC170" class="line" lang="plaintext"> 'LT_SYS_SYMBOL_USCORE' => 1,</span>
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171
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<pre style="margin: 0;">-<span id="LC171" class="line" lang="plaintext"> 'LT_WITH_LTDL' => 1,</span>
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172
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<pre style="margin: 0;">-<span id="LC172" class="line" lang="plaintext"> 'AM_SILENT_RULES' => 1,</span>
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173
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<pre style="margin: 0;">-<span id="LC173" class="line" lang="plaintext"> 'fp_C_PROTOTYPES' => 1,</span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="plaintext"> '_AM_SET_OPTION' => 1,</span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="plaintext"> '_LT_PROG_FC' => 1,</span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="plaintext"> '_LT_AC_SHELL_INIT' => 1,</span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="plaintext"> '_LT_REQUIRED_DARWIN_CHECKS' => 1,</span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="plaintext"> 'LT_FUNC_DLSYM_USCORE' => 1,</span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="plaintext"> 'AM_C_PROTOTYPES' => 1,</span>
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174
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135
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="plaintext"> 'AM_MISSING_PROG' => 1,</span>
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175
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<pre style="margin: 0;">-<span id="LC175" class="line" lang="plaintext"> 'PKG_CHECK_MODULES' => 1,</span>
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176
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<pre style="margin: 0;">-<span id="LC176" class="line" lang="plaintext"> '_LT_DLL_DEF_P' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
177
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<pre style="margin: 0;">-<span id="LC177" class="line" lang="plaintext"> 'AC_LIBTOOL_SYS_GLOBAL_SYMBOL_PIPE' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
178
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<pre style="margin: 0;">-<span id="LC178" class="line" lang="plaintext"> 'LT_LIB_M' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
179
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<pre style="margin: 0;">-<span id="LC179" class="line" lang="plaintext"> 'AM_OUTPUT_DEPENDENCY_COMMANDS' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
180
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<td class="diff-line-num new_line old" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC180" class="line" lang="plaintext"> 'LT_AC_PROG_EGREP' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
181
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<pre style="margin: 0;">-<span id="LC181" class="line" lang="plaintext"> 'AM_SANITY_CHECK' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
182
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<pre style="margin: 0;">-<span id="LC182" class="line" lang="plaintext"> '_LT_AC_CHECK_DLFCN' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
183
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<td class="diff-line-num new_line old" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC183" class="line" lang="plaintext"> '_LT_AC_LANG_F77' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
184
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<td class="diff-line-num new_line old" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC184" class="line" lang="plaintext"> 'AC_LIBTOOL_SYS_HARD_LINK_LOCKS' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
185
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<pre style="margin: 0;">-<span id="LC185" class="line" lang="plaintext"> 'AM_ENABLE_SHARED' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
186
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<td class="diff-line-num new_line old" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC186" class="line" lang="plaintext"> 'AC_LTDL_SYSSEARCHPATH' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
187
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<td class="diff-line-num new_line old" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC187" class="line" lang="plaintext"> '_AM_IF_OPTION' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
188
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<td class="diff-line-num new_line old" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC188" class="line" lang="plaintext"> 'AM_PROG_INSTALL_STRIP' => 1,</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
189
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<td class="diff-line-num new_line" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
136
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC136" class="line" lang="plaintext"> 'LT_PROG_RC' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
190
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<td class="diff-line-num new_line old" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC190" class="line" lang="plaintext"> 'AC_LTDL_SHLIBPATH' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
191
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<td class="diff-line-num new_line old" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC191" class="line" lang="plaintext"> '_LT_AC_SYS_LIBPATH_AIX' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
192
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<td class="diff-line-num new_line old" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC192" class="line" lang="plaintext"> '_PKG_SHORT_ERRORS_SUPPORTED' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
193
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<td class="diff-line-num new_line old" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC193" class="line" lang="plaintext"> 'AC_DEFUN_ONCE' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
194
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<td class="diff-line-num new_line old" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC194" class="line" lang="plaintext"> 'LT_PATH_LD' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
195
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<td class="diff-line-num new_line old" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC195" class="line" lang="plaintext"> 'AC_LIBTOOL_FC' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
196
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<td class="diff-line-num new_line old" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC196" class="line" lang="plaintext"> 'AC_LIBTOOL_PROG_COMPILER_NO_RTTI' => 1,</span>
</pre>
</td>
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<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="plaintext"> '_LT_AC_LANG_CXX_CONFIG' => 1,</span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
138
</td>
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="plaintext"> 'AC_PATH_MAGIC' => 1,</span>
</pre>
</td>
</tr>
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<td class="diff-line-num new old_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
139
</td>
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="plaintext"> 'AC_LIBTOOL_SYS_LIB_STRIP' => 1,</span>
</pre>
</td>
</tr>
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<td class="diff-line-num new old_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
140
</td>
<td class="line_content new" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#ecfdf0">
<pre style="margin: 0;">+<span id="LC140" class="line" lang="plaintext"> 'LT_SYS_DLOPEN_SELF' => 1,</span>
</pre>
</td>
</tr>
<tr class="line_holder new" id="" style="line-height: 1.6;">
<td class="diff-line-num new old_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
141
</td>
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="plaintext"> 'AC_PROG_EGREP' => 1,</span>
</pre>
</td>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="plaintext"> '_LT_AC_TAGVAR' => 1,</span>
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197
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<td class="diff-line-num new_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
143
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="plaintext"> '_LT_AC_TAGCONFIG' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
198
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<pre style="margin: 0;">-<span id="LC198" class="line" lang="plaintext"> '_LT_LINKER_OPTION' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
199
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<pre style="margin: 0;">-<span id="LC199" class="line" lang="plaintext"> 'AC_LIBTOOL_SETUP' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
200
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<pre style="margin: 0;">-<span id="LC200" class="line" lang="plaintext"> 'LTSUGAR_VERSION' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="plaintext"> 'AC_LIBLTDL_CONVENIENCE' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="plaintext"> 'LT_LIB_DLLOAD' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="plaintext"> 'AC_LIBTOOL_PROG_CC_C_O' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="plaintext"> 'LT_AC_PROG_SED' => 1,</span>
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<td class="diff-line-num old_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
201
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<td class="diff-line-num new_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
148
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="plaintext"> '_AM_AUTOCONF_VERSION' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
202
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<td class="diff-line-num new_line old" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC202" class="line" lang="plaintext"> '_AM_OUTPUT_DEPENDENCY_COMMANDS' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
203
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<td class="diff-line-num new_line old" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC203" class="line" lang="plaintext"> 'LT_CONFIG_LTDL_DIR' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
204
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<pre style="margin: 0;">-<span id="LC204" class="line" lang="plaintext"> 'AC_ENABLE_FAST_INSTALL' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
205
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<pre style="margin: 0;">-<span id="LC205" class="line" lang="plaintext"> 'AC_LIBTOOL_SYS_OLD_ARCHIVE' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
206
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<td class="diff-line-num new_line old" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC206" class="line" lang="plaintext"> 'LTDL_CONVENIENCE' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
207
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<td class="diff-line-num new_line old" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC207" class="line" lang="plaintext"> 'AM_INIT_AUTOMAKE' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
208
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<td class="diff-line-num new_line old" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC208" class="line" lang="plaintext"> 'AC_WITH_LTDL' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
209
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<td class="diff-line-num new_line old" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC209" class="line" lang="plaintext"> 'AM_SET_DEPDIR' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
210
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<pre style="margin: 0;">-<span id="LC210" class="line" lang="plaintext"> 'AC_LIBTOOL_LANG_GCJ_CONFIG' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
211
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<pre style="margin: 0;">-<span id="LC211" class="line" lang="plaintext"> 'AU_DEFUN' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
212
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<td class="diff-line-num new_line old" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC212" class="line" lang="plaintext"> 'AC_LIBTOOL_RC' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
213
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<td class="diff-line-num new_line old" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC213" class="line" lang="plaintext"> 'AC_LIB_LTDL' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
214
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<td class="diff-line-num new_line old" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC214" class="line" lang="plaintext"> '_AM_SUBST_NOTMAKE' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="215" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
215
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<td class="diff-line-num new_line old" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC215" class="line" lang="plaintext"> '_LT_PATH_TOOL_PREFIX' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="216" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
216
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<pre style="margin: 0;">-<span id="LC216" class="line" lang="plaintext"> '_AM_MANGLE_OPTION' => 1,</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="217" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
217
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<td class="diff-line-num new_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
149
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="plaintext"> 'LT_SYS_MODULE_EXT' => 1,</span>
</pre>
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218
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<pre style="margin: 0;">-<span id="LC218" class="line" lang="plaintext"> 'AC_LTDL_ENABLE_INSTALL' => 1,</span>
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219
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<pre style="margin: 0;">-<span id="LC219" class="line" lang="plaintext"> '_LT_WITH_SYSROOT' => 1,</span>
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220
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<pre style="margin: 0;">-<span id="LC220" class="line" lang="plaintext"> '_LT_COMPILER_OPTION' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="221" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
221
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<pre style="margin: 0;">-<span id="LC221" class="line" lang="plaintext"> '_LT_AC_FILE_LTDLL_C' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="222" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
222
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<pre style="margin: 0;">-<span id="LC222" class="line" lang="plaintext"> 'AC_DEFUN' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
223
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<pre style="margin: 0;">-<span id="LC223" class="line" lang="plaintext"> 'LT_SYS_DLSEARCH_PATH' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
224
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<pre style="margin: 0;">-<span id="LC224" class="line" lang="plaintext"> 'AM_DEP_TRACK' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="225" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
225
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<pre style="margin: 0;">-<span id="LC225" class="line" lang="plaintext"> 'PKG_NOARCH_INSTALLDIR' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="226" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
226
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<pre style="margin: 0;">-<span id="LC226" class="line" lang="plaintext"> 'AC_LTDL_SYS_DLOPEN_DEPLIBS' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="227" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
227
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<pre style="margin: 0;">-<span id="LC227" class="line" lang="plaintext"> 'AC_LTDL_SYMBOL_USCORE' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="228" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
228
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<pre style="margin: 0;">-<span id="LC228" class="line" lang="plaintext"> 'AC_DISABLE_FAST_INSTALL' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="229" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
229
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<pre style="margin: 0;">-<span id="LC229" class="line" lang="plaintext"> 'LT_SYS_DLOPEN_SELF' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="230" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="plaintext"> 'AC_PROG_LD_GNU' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="230" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="plaintext"> '_LT_AC_PROG_ECHO_BACKSLASH' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="230" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="152" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="plaintext"> 'AC_LIBTOOL_LANG_F77_CONFIG' => 1,</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="230" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
230
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<td class="diff-line-num new_line" data-linenumber="153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
153
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="plaintext"> 'AM_CONFIG_HEADER' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="231" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
231
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<pre style="margin: 0;">-<span id="LC231" class="line" lang="plaintext"> 'PKG_CHECK_MODULES_STATIC' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="232" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
232
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<pre style="margin: 0;">-<span id="LC232" class="line" lang="plaintext"> 'AC_LIBTOOL_OBJDIR' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="233" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
233
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<pre style="margin: 0;">-<span id="LC233" class="line" lang="plaintext"> 'LT_LANG' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
234
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<pre style="margin: 0;">-<span id="LC234" class="line" lang="plaintext"> 'LT_SYS_MODULE_PATH' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="235" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
235
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<pre style="margin: 0;">-<span id="LC235" class="line" lang="plaintext"> 'AC_LIBTOOL_CXX' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
236
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<pre style="margin: 0;">-<span id="LC236" class="line" lang="plaintext"> 'AC_LIBTOOL_DLOPEN' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="plaintext"> '_PKG_SHORT_ERRORS_SUPPORTED' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="plaintext"> 'AX_OPENMP' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="156" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="plaintext"> 'AC_PROG_LD_RELOAD_FLAG' => 1,</span>
</pre>
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</tr>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="plaintext"> 'AC_LTDL_SHLIBEXT' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="plaintext"> 'AC_LTDL_SYMBOL_USCORE' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="plaintext"> 'AC_CHECK_LIBM' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="plaintext"> 'LT_LANG' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="plaintext"> 'AC_LTDL_PREOPEN' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="plaintext"> '_LT_AC_LANG_F77' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
163
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="plaintext"> 'AC_LTDL_SYS_DLOPEN_DEPLIBS' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="plaintext"> 'AC_PATH_TOOL_PREFIX' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="165" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="plaintext"> 'AM_INIT_AUTOMAKE' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
166
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="plaintext"> 'AC_DISABLE_FAST_INSTALL' => 1,</span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="plaintext"> 'm4_pattern_allow' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="plaintext"> 'AM_PROG_LD' => 1,</span>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="plaintext"> 'LTDL_CONVENIENCE' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="plaintext"> 'LT_PROG_GO' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="plaintext"> '_AM_SET_OPTIONS' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
172
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="plaintext"> 'AC_LIBTOOL_LANG_C_CONFIG' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="plaintext"> '_m4_warn' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="174" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="plaintext"> '_AM_SUBST_NOTMAKE' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="175" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="plaintext"> '_LTDL_SETUP' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="plaintext"> 'AM_AUX_DIR_EXPAND' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="plaintext"> 'AC_LIBTOOL_SYS_DYNAMIC_LINKER' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="plaintext"> '_LT_AC_LANG_CXX' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="plaintext"> 'AC_LIBTOOL_LANG_CXX_CONFIG' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="180" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="plaintext"> '_LT_AC_SYS_COMPILER' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="181" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="plaintext"> '_LT_AC_CHECK_DLFCN' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="182" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="plaintext"> 'AC_LIBLTDL_INSTALLABLE' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="183" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
183
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="plaintext"> 'AC_WITH_LTDL' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="plaintext"> 'PKG_CHECK_EXISTS' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="185" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="plaintext"> 'LT_PATH_LD' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="186" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
186
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<pre style="margin: 0;">+<span id="LC186" class="line" lang="plaintext"> 'AC_LIBTOOL_LANG_RC_CONFIG' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="187" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
187
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<pre style="margin: 0;">+<span id="LC187" class="line" lang="plaintext"> 'LTOPTIONS_VERSION' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="188" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
188
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="plaintext"> 'LT_CMD_MAX_LEN' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
189
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="plaintext"> 'AC_LIBTOOL_PROG_COMPILER_PIC' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
190
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="plaintext"> 'AC_DEFUN_ONCE' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="plaintext"> 'AC_CONFIG_MACRO_DIR' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
192
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="plaintext"> '_AM_IF_OPTION' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
193
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="plaintext"> '_LT_AC_LANG_RC_CONFIG' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
194
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="plaintext"> '_LT_LINKER_BOILERPLATE' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="plaintext"> 'LT_AC_PROG_GCJ' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
196
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="plaintext"> '_LT_AC_PROG_CXXCPP' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
197
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="plaintext"> 'AC_CONFIG_MACRO_DIR_TRACE' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
198
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="plaintext"> '_AM_CONFIG_MACRO_DIRS' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
199
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="plaintext"> 'LT_SYS_MODULE_PATH' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="plaintext"> 'AC_LIBTOOL_PICMODE' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
201
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="plaintext"> '_LT_PROG_F77' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
202
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="plaintext"> 'AC_LTDL_DLLIB' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
203
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="plaintext"> 'AM_DEP_TRACK' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
204
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="plaintext"> 'm4_pattern_forbid' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
205
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<pre style="margin: 0;">+<span id="LC205" class="line" lang="plaintext"> '_LT_PATH_TOOL_PREFIX' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
206
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="plaintext"> 'LT_SYS_DLOPEN_DEPLIBS' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
207
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="plaintext"> 'LT_CONFIG_LTDL_DIR' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
208
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="plaintext"> 'AM_AUTOMAKE_VERSION' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
209
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="plaintext"> 'AC_LIBTOOL_SETUP' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
210
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="plaintext"> 'LT_OUTPUT' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
211
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="plaintext"> 'AC_LIBTOOL_LANG_GCJ_CONFIG' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
212
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="plaintext"> 'LT_AC_PROG_EGREP' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
213
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="plaintext"> 'AU_DEFUN' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
214
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="plaintext"> 'AC_LIBTOOL_SYS_GLOBAL_SYMBOL_PIPE' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="215" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
215
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<pre style="margin: 0;">+<span id="LC215" class="line" lang="plaintext"> '_AM_MANGLE_OPTION' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="216" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
216
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<pre style="margin: 0;">+<span id="LC216" class="line" lang="plaintext"> 'AM_PROG_INSTALL_SH' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="217" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
217
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="plaintext"> 'AM_SET_LEADING_DOT' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="218" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
218
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="plaintext"> 'PKG_NOARCH_INSTALLDIR' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="219" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
219
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="plaintext"> 'LT_AC_PROG_RC' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="220" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
220
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="plaintext"> '_LT_COMPILER_BOILERPLATE' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="221" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
221
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="plaintext"> 'AC_DEFUN' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="222" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
222
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="plaintext"> 'AM_DISABLE_STATIC' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
223
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="plaintext"> 'AC_LIBTOOL_OBJDIR' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
224
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="plaintext"> '_LT_AC_SYS_LIBPATH_AIX' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="225" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
225
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="plaintext"> '_LT_AC_TRY_DLOPEN_SELF' => 1,</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
237
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<td class="diff-line-num new_line" data-linenumber="226" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
226
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="plaintext"> 'AM_SET_CURRENT_AUTOMAKE_VERSION' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
238
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<td class="diff-line-num new_line old" data-linenumber="227" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC238" class="line" lang="plaintext"> 'm4_include' => 1</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="227" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
227
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="plaintext"> 'AC_ENABLE_SHARED' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="228" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
228
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="plaintext"> '_LT_PROG_LTMAIN' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="229" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
229
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="plaintext"> 'LT_PATH_NM' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="230" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
230
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="plaintext"> 'AM_MAKE_INCLUDE' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="231" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
231
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="plaintext"> 'AC_LTDL_ENABLE_INSTALL' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="232" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
232
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<pre style="margin: 0;">+<span id="LC232" class="line" lang="plaintext"> 'AC_LIBTOOL_LINKER_OPTION' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="233" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
233
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<pre style="margin: 0;">+<span id="LC233" class="line" lang="plaintext"> 'AC_LIBTOOL_DLOPEN_SELF' => 1,</span>
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234
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<pre style="margin: 0;">+<span id="LC234" class="line" lang="plaintext"> 'AC_LIBTOOL_CONFIG' => 1,</span>
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235
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<pre style="margin: 0;">+<span id="LC235" class="line" lang="plaintext"> '_AM_PROG_CC_C_O' => 1,</span>
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236
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="plaintext"> 'AC_LIBTOOL_SYS_HARD_LINK_LOCKS' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
237
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="plaintext"> 'AC_LIBTOOL_SYS_MAX_CMD_LEN' => 1,</span>
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238
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<pre style="margin: 0;">+<span id="LC238" class="line" lang="plaintext"> 'LTDL_INSTALLABLE' => 1</span>
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239
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239
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<pre style="margin: 0;"> <span id="LC239" class="line" lang="plaintext"> }</span>
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240
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240
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<pre style="margin: 0;"> <span id="LC240" class="line" lang="plaintext"> ], 'Autom4te::Request' ),</span>
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241
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241
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<pre style="margin: 0;"> <span id="LC241" class="line" lang="plaintext"> bless( [</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="250" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="250" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -250,66 +250,66 @@</td>
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250
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<pre style="margin: 0;"> <span id="LC250" class="line" lang="plaintext"> 'configure.ac'</span>
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251
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251
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<pre style="margin: 0;"> <span id="LC251" class="line" lang="plaintext"> ],</span>
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252
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<pre style="margin: 0;"> <span id="LC252" class="line" lang="plaintext"> {</span>
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253
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<pre style="margin: 0;">-<span id="LC253" class="line" lang="plaintext"> 'AC_FC_PP_DEFINE' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
254
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<pre style="margin: 0;">-<span id="LC254" class="line" lang="plaintext"> 'AM_POT_TOOLS' => 1,</span>
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255
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<pre style="margin: 0;">-<span id="LC255" class="line" lang="plaintext"> 'AM_MAINTAINER_MODE' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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253
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<pre style="margin: 0;">+<span id="LC253" class="line" lang="plaintext"> 'AM_EXTRA_RECURSIVE_TARGETS' => 1,</span>
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254
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<pre style="margin: 0;">+<span id="LC254" class="line" lang="plaintext"> '_AM_MAKEFILE_INCLUDE' => 1,</span>
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<pre style="margin: 0;">+<span id="LC255" class="line" lang="plaintext"> 'AC_CONFIG_LINKS' => 1,</span>
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256
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<pre style="margin: 0;">+<span id="LC256" class="line" lang="plaintext"> 'AM_PROG_CXX_C_O' => 1,</span>
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257
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<pre style="margin: 0;">+<span id="LC257" class="line" lang="plaintext"> '_LT_AC_TAGCONFIG' => 1,</span>
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256
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<td class="diff-line-num new_line" data-linenumber="258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
258
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<pre style="margin: 0;"> <span id="LC258" class="line" lang="plaintext"> 'AM_NLS' => 1,</span>
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257
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<pre style="margin: 0;">-<span id="LC257" class="line" lang="plaintext"> 'AM_SILENT_RULES' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
258
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<td class="diff-line-num new_line old" data-linenumber="259" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC258" class="line" lang="plaintext"> 'AC_REQUIRE_AUX_FILE' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="259" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
259
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<td class="diff-line-num new_line old" data-linenumber="259" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC259" class="line" lang="plaintext"> 'AM_PROG_FC_C_O' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="260" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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259
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<pre style="margin: 0;">+<span id="LC259" class="line" lang="plaintext"> 'AC_INIT' => 1,</span>
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260
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<pre style="margin: 0;">+<span id="LC260" class="line" lang="plaintext"> 'm4_sinclude' => 1,</span>
</pre>
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260
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<td class="diff-line-num new_line" data-linenumber="261" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
261
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<pre style="margin: 0;"> <span id="LC261" class="line" lang="plaintext"> 'AC_CONFIG_SUBDIRS' => 1,</span>
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261
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<td class="diff-line-num new_line old" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC261" class="line" lang="plaintext"> 'AH_OUTPUT' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
262
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<td class="diff-line-num new_line old" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC262" class="line" lang="plaintext"> '_AM_COND_ELSE' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
263
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<td class="diff-line-num new_line old" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC263" class="line" lang="plaintext"> 'AC_DEFINE_TRACE_LITERAL' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="262" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
262
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<pre style="margin: 0;">+<span id="LC262" class="line" lang="plaintext"> 'AM_PROG_F77_C_O' => 1,</span>
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<td class="diff-line-num old_line" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
264
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<td class="diff-line-num new_line" data-linenumber="263" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
263
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<pre style="margin: 0;"> <span id="LC263" class="line" lang="plaintext"> 'AC_CONFIG_AUX_DIR' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
265
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<td class="diff-line-num new_line old" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC265" class="line" lang="plaintext"> 'AC_FC_FREEFORM' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="266" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
266
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<td class="diff-line-num new_line old" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC266" class="line" lang="plaintext"> 'AC_FC_SRCEXT' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
267
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<td class="diff-line-num new_line old" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC267" class="line" lang="plaintext"> 'AC_FC_PP_SRCEXT' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="268" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
268
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<pre style="margin: 0;">-<span id="LC268" class="line" lang="plaintext"> 'AC_CONFIG_LIBOBJ_DIR' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
269
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<td class="diff-line-num new_line old" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC269" class="line" lang="plaintext"> 'AM_XGETTEXT_OPTION' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="270" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
270
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<td class="diff-line-num new_line old" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC270" class="line" lang="plaintext"> 'AM_PROG_MKDIR_P' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
271
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<td class="diff-line-num new_line old" data-linenumber="264" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC271" class="line" lang="plaintext"> 'AM_PROG_MOC' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
272
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<pre style="margin: 0;">-<span id="LC272" class="line" lang="plaintext"> '_LT_AC_TAGCONFIG' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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264
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<pre style="margin: 0;">+<span id="LC264" class="line" lang="plaintext"> 'AM_GNU_GETTEXT' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="265" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
265
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<pre style="margin: 0;">+<span id="LC265" class="line" lang="plaintext"> 'AC_CANONICAL_SYSTEM' => 1,</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
273
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<td class="diff-line-num new_line" data-linenumber="266" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
266
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC266" class="line" lang="plaintext"> 'm4_include' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
274
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<td class="diff-line-num new_line old" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC274" class="line" lang="plaintext"> 'AC_PROG_LIBTOOL' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="275" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
275
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<td class="diff-line-num new_line old" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC275" class="line" lang="plaintext"> 'm4_sinclude' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
276
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<td class="diff-line-num new_line old" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC276" class="line" lang="plaintext"> 'AC_SUBST_TRACE' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
277
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<td class="diff-line-num new_line old" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC277" class="line" lang="plaintext"> 'AM_PROG_F77_C_O' => 1,</span>
</pre>
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<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="278" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
278
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<td class="diff-line-num new_line old" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC278" class="line" lang="plaintext"> 'AM_INIT_AUTOMAKE' => 1,</span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
279
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<td class="diff-line-num new_line old" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC279" class="line" lang="plaintext"> 'AM_GNU_GETTEXT_INTL_SUBDIR' => 1,</span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="280" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
280
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<td class="diff-line-num new_line old" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC280" class="line" lang="plaintext"> 'AC_LIBSOURCE' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="267" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
267
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<pre style="margin: 0;">+<span id="LC267" class="line" lang="plaintext"> 'AM_MAINTAINER_MODE' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="268" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
268
</td>
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<pre style="margin: 0;">+<span id="LC268" class="line" lang="plaintext"> 'AM_PROG_LIBTOOL' => 1,</span>
</pre>
</td>
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<td class="diff-line-num new new_line" data-linenumber="269" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
269
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<pre style="margin: 0;">+<span id="LC269" class="line" lang="plaintext"> 'AC_DEFINE_TRACE_LITERAL' => 1,</span>
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270
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="plaintext"> 'AM_PROG_FC_C_O' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
271
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<pre style="margin: 0;">+<span id="LC271" class="line" lang="plaintext"> 'AC_CANONICAL_BUILD' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="272" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
272
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="plaintext"> 'm4_pattern_forbid' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="273" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
273
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="plaintext"> 'AC_CONFIG_LIBOBJ_DIR' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="274" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
274
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="plaintext"> 'AC_CONFIG_FILES' => 1,</span>
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<td class="diff-line-num old_line" data-linenumber="281" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
281
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<td class="diff-line-num new_line" data-linenumber="275" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
275
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<pre style="margin: 0;"> <span id="LC275" class="line" lang="plaintext"> 'LT_CONFIG_LTDL_DIR' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="282" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
282
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<td class="diff-line-num new_line old" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC282" class="line" lang="plaintext"> 'AM_PROG_AR' => 1,</span>
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<td class="diff-line-num old_line" data-linenumber="283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
283
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<td class="diff-line-num new_line" data-linenumber="276" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
276
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<pre style="margin: 0;"> <span id="LC276" class="line" lang="plaintext"> 'AM_AUTOMAKE_VERSION' => 1,</span>
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284
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<pre style="margin: 0;">-<span id="LC284" class="line" lang="plaintext"> 'AC_CANONICAL_SYSTEM' => 1,</span>
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277
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="plaintext"> 'AC_SUBST' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="278" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
278
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="plaintext"> 'AC_LIBSOURCE' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="279" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
279
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="plaintext"> 'AM_ENABLE_MULTILIB' => 1,</span>
</pre>
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280
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="plaintext"> 'AH_OUTPUT' => 1,</span>
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281
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<pre style="margin: 0;">+<span id="LC281" class="line" lang="plaintext"> '_AM_COND_ELSE' => 1,</span>
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282
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="plaintext"> '_AM_SUBST_NOTMAKE' => 1,</span>
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283
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<pre style="margin: 0;">+<span id="LC283" class="line" lang="plaintext"> 'AC_FC_PP_SRCEXT' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="284" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
284
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<pre style="margin: 0;">+<span id="LC284" class="line" lang="plaintext"> 'AC_FC_FREEFORM' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
285
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<pre style="margin: 0;">+<span id="LC285" class="line" lang="plaintext"> 'AM_POT_TOOLS' => 1,</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
285
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<td class="diff-line-num new_line" data-linenumber="286" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
286
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<pre style="margin: 0;"> <span id="LC286" class="line" lang="plaintext"> 'LT_SUPPORTED_TAG' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="286" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
286
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<td class="diff-line-num new_line old" data-linenumber="287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC286" class="line" lang="plaintext"> 'include' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
287
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<td class="diff-line-num new_line old" data-linenumber="287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC287" class="line" lang="plaintext"> 'AC_CANONICAL_HOST' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="288" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
288
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<td class="diff-line-num new_line old" data-linenumber="287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC288" class="line" lang="plaintext"> 'm4_pattern_allow' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
289
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<td class="diff-line-num new_line old" data-linenumber="287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC289" class="line" lang="plaintext"> 'AC_CONFIG_FILES' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="290" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
290
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<td class="diff-line-num new_line old" data-linenumber="287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC290" class="line" lang="plaintext"> 'sinclude' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="291" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
291
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<td class="diff-line-num new_line old" data-linenumber="287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC291" class="line" lang="plaintext"> '_m4_warn' => 1,</span>
</pre>
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292
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287
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<pre style="margin: 0;"> <span id="LC287" class="line" lang="plaintext"> 'AM_MAKEFILE_INCLUDE' => 1,</span>
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293
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<pre style="margin: 0;">-<span id="LC293" class="line" lang="plaintext"> '_AM_COND_IF' => 1,</span>
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294
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<pre style="margin: 0;">-<span id="LC294" class="line" lang="plaintext"> '_AM_MAKEFILE_INCLUDE' => 1,</span>
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295
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<pre style="margin: 0;">-<span id="LC295" class="line" lang="plaintext"> 'AM_PATH_GUILE' => 1,</span>
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288
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<pre style="margin: 0;">+<span id="LC288" class="line" lang="plaintext"> 'AM_PROG_AR' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
289
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="plaintext"> 'AM_XGETTEXT_OPTION' => 1,</span>
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296
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290
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<pre style="margin: 0;"> <span id="LC290" class="line" lang="plaintext"> 'LT_INIT' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="297" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
297
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<pre style="margin: 0;">-<span id="LC297" class="line" lang="plaintext"> 'AM_EXTRA_RECURSIVE_TARGETS' => 1,</span>
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291
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<pre style="margin: 0;">+<span id="LC291" class="line" lang="plaintext"> '_m4_warn' => 1,</span>
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292
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<pre style="margin: 0;">+<span id="LC292" class="line" lang="plaintext"> 'AC_PROG_LIBTOOL' => 1,</span>
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293
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<pre style="margin: 0;">+<span id="LC293" class="line" lang="plaintext"> 'AC_FC_PP_DEFINE' => 1,</span>
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294
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<pre style="margin: 0;">+<span id="LC294" class="line" lang="plaintext"> 'AM_PROG_MOC' => 1,</span>
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295
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<pre style="margin: 0;">+<span id="LC295" class="line" lang="plaintext"> 'm4_pattern_allow' => 1,</span>
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296
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<pre style="margin: 0;">+<span id="LC296" class="line" lang="plaintext"> 'sinclude' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="297" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
297
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<pre style="margin: 0;">+<span id="LC297" class="line" lang="plaintext"> 'AC_CANONICAL_HOST' => 1,</span>
</pre>
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298
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<pre style="margin: 0;">+<span id="LC298" class="line" lang="plaintext"> 'AC_REQUIRE_AUX_FILE' => 1,</span>
</pre>
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298
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299
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<pre style="margin: 0;"> <span id="LC299" class="line" lang="plaintext"> 'AM_PROG_CC_C_O' => 1,</span>
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299
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<pre style="margin: 0;">-<span id="LC299" class="line" lang="plaintext"> 'AM_PROG_CXX_C_O' => 1,</span>
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300
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<td class="diff-line-num new_line old" data-linenumber="300" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC300" class="line" lang="plaintext"> 'AM_PROG_LIBTOOL' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="301" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
301
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<td class="diff-line-num new_line old" data-linenumber="300" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC301" class="line" lang="plaintext"> '_AM_SUBST_NOTMAKE' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="302" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
302
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<td class="diff-line-num new_line old" data-linenumber="300" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC302" class="line" lang="plaintext"> 'AC_CANONICAL_TARGET' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="303" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
303
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<td class="diff-line-num new_line old" data-linenumber="300" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC303" class="line" lang="plaintext"> 'AC_SUBST' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="304" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
304
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<td class="diff-line-num new_line old" data-linenumber="300" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC304" class="line" lang="plaintext"> 'AC_INIT' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="305" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
305
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<td class="diff-line-num new_line old" data-linenumber="300" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC305" class="line" lang="plaintext"> 'AM_ENABLE_MULTILIB' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="306" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
306
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<td class="diff-line-num new_line old" data-linenumber="300" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC306" class="line" lang="plaintext"> 'AM_GNU_GETTEXT' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="307" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
307
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<td class="diff-line-num new_line old" data-linenumber="300" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC307" class="line" lang="plaintext"> 'm4_pattern_forbid' => 1,</span>
</pre>
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<pre style="margin: 0;">-<span id="LC308" class="line" lang="plaintext"> 'AC_CANONICAL_BUILD' => 1,</span>
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309
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<pre style="margin: 0;">-<span id="LC309" class="line" lang="plaintext"> 'AC_CONFIG_HEADERS' => 1,</span>
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310
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<pre style="margin: 0;">-<span id="LC310" class="line" lang="plaintext"> 'AC_CONFIG_LINKS' => 1,</span>
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300
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<pre style="margin: 0;">+<span id="LC300" class="line" lang="plaintext"> 'AM_CONDITIONAL' => 1,</span>
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301
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<pre style="margin: 0;">+<span id="LC301" class="line" lang="plaintext"> 'AM_INIT_AUTOMAKE' => 1,</span>
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311
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302
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<pre style="margin: 0;"> <span id="LC302" class="line" lang="plaintext"> '_AM_COND_ENDIF' => 1,</span>
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312
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<pre style="margin: 0;">-<span id="LC312" class="line" lang="plaintext"> 'AM_CONDITIONAL' => 1</span>
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303
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<pre style="margin: 0;">+<span id="LC303" class="line" lang="plaintext"> 'AC_FC_SRCEXT' => 1,</span>
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304
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<pre style="margin: 0;">+<span id="LC304" class="line" lang="plaintext"> 'AC_CONFIG_HEADERS' => 1,</span>
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305
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<pre style="margin: 0;">+<span id="LC305" class="line" lang="plaintext"> 'AM_SILENT_RULES' => 1,</span>
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306
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<pre style="margin: 0;">+<span id="LC306" class="line" lang="plaintext"> 'AC_SUBST_TRACE' => 1,</span>
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307
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<pre style="margin: 0;">+<span id="LC307" class="line" lang="plaintext"> 'AM_PROG_MKDIR_P' => 1,</span>
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308
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<pre style="margin: 0;">+<span id="LC308" class="line" lang="plaintext"> 'include' => 1,</span>
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309
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<pre style="margin: 0;">+<span id="LC309" class="line" lang="plaintext"> 'AM_PATH_GUILE' => 1,</span>
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310
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<pre style="margin: 0;">+<span id="LC310" class="line" lang="plaintext"> '_AM_COND_IF' => 1,</span>
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311
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<pre style="margin: 0;">+<span id="LC311" class="line" lang="plaintext"> 'AM_GNU_GETTEXT_INTL_SUBDIR' => 1,</span>
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<pre style="margin: 0;">+<span id="LC312" class="line" lang="plaintext"> 'AC_CANONICAL_TARGET' => 1</span>
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313
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313
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<pre style="margin: 0;"> <span id="LC313" class="line" lang="plaintext"> }</span>
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314
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314
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<pre style="margin: 0;"> <span id="LC314" class="line" lang="plaintext"> ], 'Autom4te::Request' ),</span>
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315
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315
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<pre style="margin: 0;"> <span id="LC315" class="line" lang="plaintext"> bless( [</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -353,198 +353,198 @@</td>
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353
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353
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<pre style="margin: 0;"> <span id="LC353" class="line" lang="plaintext"> 'configure.ac'</span>
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354
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354
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<pre style="margin: 0;"> <span id="LC354" class="line" lang="plaintext"> ],</span>
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355
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355
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<pre style="margin: 0;"> <span id="LC355" class="line" lang="plaintext"> {</span>
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356
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<pre style="margin: 0;">-<span id="LC356" class="line" lang="plaintext"> '_LT_COMPILER_OPTION' => 1,</span>
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357
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<pre style="margin: 0;">-<span id="LC357" class="line" lang="plaintext"> '_LT_WITH_SYSROOT' => 1,</span>
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358
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<pre style="margin: 0;">-<span id="LC358" class="line" lang="plaintext"> 'LT_SYS_MODULE_EXT' => 1,</span>
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359
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<pre style="margin: 0;">-<span id="LC359" class="line" lang="plaintext"> 'AC_LTDL_ENABLE_INSTALL' => 1,</span>
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360
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<td class="diff-line-num new_line old" data-linenumber="356" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC360" class="line" lang="plaintext"> '_AM_MANGLE_OPTION' => 1,</span>
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361
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<pre style="margin: 0;">-<span id="LC361" class="line" lang="plaintext"> '_LT_PATH_TOOL_PREFIX' => 1,</span>
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356
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<pre style="margin: 0;">+<span id="LC356" class="line" lang="plaintext"> '_AM_OUTPUT_DEPENDENCY_COMMANDS' => 1,</span>
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357
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<pre style="margin: 0;">+<span id="LC357" class="line" lang="plaintext"> 'AM_PROG_CC_STDC' => 1,</span>
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358
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<pre style="margin: 0;">+<span id="LC358" class="line" lang="plaintext"> 'AC_LIBTOOL_PROG_COMPILER_NO_RTTI' => 1,</span>
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359
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<pre style="margin: 0;">+<span id="LC359" class="line" lang="plaintext"> 'AM_ENABLE_STATIC' => 1,</span>
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360
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<pre style="margin: 0;">+<span id="LC360" class="line" lang="plaintext"> 'LTVERSION_VERSION' => 1,</span>
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361
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<pre style="margin: 0;">+<span id="LC361" class="line" lang="plaintext"> 'PKG_INSTALLDIR' => 1,</span>
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362
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<pre style="margin: 0;">+<span id="LC362" class="line" lang="plaintext"> 'fp_C_PROTOTYPES' => 1,</span>
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362
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363
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<pre style="margin: 0;"> <span id="LC363" class="line" lang="plaintext"> 'AC_LIB_LTDL' => 1,</span>
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364
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<pre style="margin: 0;">+<span id="LC364" class="line" lang="plaintext"> 'LT_SYS_DLSEARCH_PATH' => 1,</span>
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365
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<pre style="margin: 0;">+<span id="LC365" class="line" lang="plaintext"> 'AC_LTDL_SHLIBPATH' => 1,</span>
</pre>
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366
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<pre style="margin: 0;">+<span id="LC366" class="line" lang="plaintext"> '_LT_COMPILER_OPTION' => 1,</span>
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367
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<pre style="margin: 0;">+<span id="LC367" class="line" lang="plaintext"> 'LTDL_INIT' => 1,</span>
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368
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<pre style="margin: 0;">+<span id="LC368" class="line" lang="plaintext"> '_LT_DLL_DEF_P' => 1,</span>
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369
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<pre style="margin: 0;">+<span id="LC369" class="line" lang="plaintext"> '_LT_AC_LANG_F77_CONFIG' => 1,</span>
</pre>
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370
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<pre style="margin: 0;">+<span id="LC370" class="line" lang="plaintext"> 'AM_SANITY_CHECK' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="371" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
371
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<pre style="margin: 0;">+<span id="LC371" class="line" lang="plaintext"> 'PKG_CHECK_VAR' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="372" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
372
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<pre style="margin: 0;">+<span id="LC372" class="line" lang="plaintext"> 'AC_LIBTOOL_PROG_LD_SHLIBS' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="373" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
373
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<pre style="margin: 0;">+<span id="LC373" class="line" lang="plaintext"> 'AM_RUN_LOG' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="374" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
374
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<pre style="margin: 0;">+<span id="LC374" class="line" lang="plaintext"> 'AC_LTDL_DLSYM_USCORE' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="375" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
375
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<pre style="margin: 0;">+<span id="LC375" class="line" lang="plaintext"> 'AC_ENABLE_STATIC' => 1,</span>
</pre>
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376
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<pre style="margin: 0;">+<span id="LC376" class="line" lang="plaintext"> 'LT_SYS_SYMBOL_USCORE' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="377" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
377
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<pre style="margin: 0;">+<span id="LC377" class="line" lang="plaintext"> 'AC_LIBTOOL_PROG_LD_HARDCODE_LIBPATH' => 1,</span>
</pre>
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378
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<pre style="margin: 0;">+<span id="LC378" class="line" lang="plaintext"> 'include' => 1,</span>
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363
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379
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<pre style="margin: 0;"> <span id="LC379" class="line" lang="plaintext"> 'AC_LIBTOOL_RC' => 1,</span>
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364
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<pre style="margin: 0;">-<span id="LC364" class="line" lang="plaintext"> '_AM_SUBST_NOTMAKE' => 1,</span>
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365
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<pre style="margin: 0;">-<span id="LC365" class="line" lang="plaintext"> 'AC_LIBTOOL_LANG_GCJ_CONFIG' => 1,</span>
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366
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<pre style="margin: 0;">-<span id="LC366" class="line" lang="plaintext"> 'AU_DEFUN' => 1,</span>
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367
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<pre style="margin: 0;">-<span id="LC367" class="line" lang="plaintext"> 'AM_SET_DEPDIR' => 1,</span>
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380
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<pre style="margin: 0;">+<span id="LC380" class="line" lang="plaintext"> 'AC_PROG_LD' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="381" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
381
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<pre style="margin: 0;">+<span id="LC381" class="line" lang="plaintext"> '_AM_PROG_TAR' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="382" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
382
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<pre style="margin: 0;">+<span id="LC382" class="line" lang="plaintext"> 'PKG_CHECK_MODULES' => 1,</span>
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383
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<pre style="margin: 0;">+<span id="LC383" class="line" lang="plaintext"> 'LT_FUNC_ARGZ' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="384" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
384
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<pre style="margin: 0;">+<span id="LC384" class="line" lang="plaintext"> '_LT_PREPARE_SED_QUOTE_VARS' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="385" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
385
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<pre style="margin: 0;">+<span id="LC385" class="line" lang="plaintext"> '_LT_LIBOBJ' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="386" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
386
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<pre style="margin: 0;">+<span id="LC386" class="line" lang="plaintext"> 'AM_CONDITIONAL' => 1,</span>
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387
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<pre style="margin: 0;">+<span id="LC387" class="line" lang="plaintext"> 'AM_ENABLE_SHARED' => 1,</span>
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388
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<pre style="margin: 0;">+<span id="LC388" class="line" lang="plaintext"> 'LT_INIT' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="389" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
389
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<pre style="margin: 0;">+<span id="LC389" class="line" lang="plaintext"> 'AC_LIBTOOL_FC' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="390" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
390
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<pre style="margin: 0;">+<span id="LC390" class="line" lang="plaintext"> 'PKG_PROG_PKG_CONFIG' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="391" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
391
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<pre style="margin: 0;">+<span id="LC391" class="line" lang="plaintext"> 'AM_MISSING_HAS_RUN' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="392" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
392
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<pre style="margin: 0;">+<span id="LC392" class="line" lang="plaintext"> 'LT_SUPPORTED_TAG' => 1,</span>
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368
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<td class="diff-line-num new_line" data-linenumber="393" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
393
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<pre style="margin: 0;"> <span id="LC393" class="line" lang="plaintext"> 'AC_LIBTOOL_SYS_OLD_ARCHIVE' => 1,</span>
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369
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<td class="diff-line-num new_line old" data-linenumber="394" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC369" class="line" lang="plaintext"> 'AC_WITH_LTDL' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="370" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
370
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<td class="diff-line-num new_line old" data-linenumber="394" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC370" class="line" lang="plaintext"> 'LTDL_CONVENIENCE' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="371" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
371
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<td class="diff-line-num new_line old" data-linenumber="394" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC371" class="line" lang="plaintext"> 'AM_INIT_AUTOMAKE' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="372" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
372
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<td class="diff-line-num new_line old" data-linenumber="394" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC372" class="line" lang="plaintext"> '_AM_AUTOCONF_VERSION' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="373" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
373
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<td class="diff-line-num new_line old" data-linenumber="394" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC373" class="line" lang="plaintext"> 'AC_ENABLE_FAST_INSTALL' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="374" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
374
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<td class="diff-line-num new_line old" data-linenumber="394" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC374" class="line" lang="plaintext"> 'LT_CONFIG_LTDL_DIR' => 1,</span>
</pre>
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375
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<pre style="margin: 0;">-<span id="LC375" class="line" lang="plaintext"> '_AM_OUTPUT_DEPENDENCY_COMMANDS' => 1,</span>
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376
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<pre style="margin: 0;">-<span id="LC376" class="line" lang="plaintext"> 'AM_SET_CURRENT_AUTOMAKE_VERSION' => 1,</span>
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394
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<pre style="margin: 0;">+<span id="LC394" class="line" lang="plaintext"> 'AM_PROG_LIBTOOL' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="395" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
395
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<pre style="margin: 0;">+<span id="LC395" class="line" lang="plaintext"> 'LTSUGAR_VERSION' => 1,</span>
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377
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<td class="diff-line-num new_line" data-linenumber="396" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
396
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<pre style="margin: 0;"> <span id="LC396" class="line" lang="plaintext"> 'm4_include' => 1,</span>
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378
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<td class="diff-line-num new_line old" data-linenumber="397" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC378" class="line" lang="plaintext"> '<span class="idiff left right">LT_SYS_MODULE_PATH</span>' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="397" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
397
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<pre style="margin: 0;">+<span id="LC397" class="line" lang="plaintext"> '<span class="idiff left right">AC_LIBTOOL_COMPILER_OPTION</span>' => 1,</span>
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<td class="diff-line-num old_line" data-linenumber="379" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
379
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<td class="diff-line-num new_line" data-linenumber="398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
398
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<pre style="margin: 0;"> <span id="LC398" class="line" lang="plaintext"> 'AC_LIBTOOL_DLOPEN' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="399" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
399
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<pre style="margin: 0;">+<span id="LC399" class="line" lang="plaintext"> 'LT_WITH_LTDL' => 1,</span>
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400
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<pre style="margin: 0;">+<span id="LC400" class="line" lang="plaintext"> 'AC_DISABLE_SHARED' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="401" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
401
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<pre style="margin: 0;">+<span id="LC401" class="line" lang="plaintext"> '_LT_AC_LANG_C_CONFIG' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="402" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
402
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<pre style="margin: 0;">+<span id="LC402" class="line" lang="plaintext"> 'AM_DISABLE_SHARED' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="403" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
403
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<pre style="margin: 0;">+<span id="LC403" class="line" lang="plaintext"> 'AM_PROG_INSTALL_STRIP' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="404" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
404
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<pre style="margin: 0;">+<span id="LC404" class="line" lang="plaintext"> '_AC_AM_CONFIG_HEADER_HOOK' => 1,</span>
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380
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<td class="diff-line-num new_line" data-linenumber="405" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
405
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<pre style="margin: 0;"> <span id="LC405" class="line" lang="plaintext"> 'AC_LIBTOOL_CXX' => 1,</span>
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381
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<td class="diff-line-num new_line old" data-linenumber="406" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC381" class="line" lang="plaintext"> 'LT_LANG' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="382" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
382
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<td class="diff-line-num new_line old" data-linenumber="406" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC382" class="line" lang="plaintext"> 'LT_SYS_DLOPEN_SELF' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="383" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
383
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<td class="diff-line-num new_line old" data-linenumber="406" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC383" class="line" lang="plaintext"> 'AC_DISABLE_FAST_INSTALL' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="384" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="406" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
406
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<pre style="margin: 0;">+<span id="LC406" class="line" lang="plaintext"> '_LT_AC_LOCK' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="384" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="407" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
407
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<pre style="margin: 0;">+<span id="LC407" class="line" lang="plaintext"> 'AC_LIBTOOL_GCJ' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="384" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="408" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
408
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<pre style="margin: 0;">+<span id="LC408" class="line" lang="plaintext"> '_LT_LINKER_OPTION' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="384" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="409" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
409
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<pre style="margin: 0;">+<span id="LC409" class="line" lang="plaintext"> 'LT_PROG_GCJ' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="384" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="410" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
410
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<pre style="margin: 0;">+<span id="LC410" class="line" lang="plaintext"> 'AC_LTDL_OBJDIR' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="384" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="411" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
411
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<pre style="margin: 0;">+<span id="LC411" class="line" lang="plaintext"> 'AM_PROG_NM' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="384" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="412" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
412
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<pre style="margin: 0;">+<span id="LC412" class="line" lang="plaintext"> 'AM_SILENT_RULES' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="413" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
413
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<pre style="margin: 0;">+<span id="LC413" class="line" lang="plaintext"> 'LTOBSOLETE_VERSION' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="414" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
414
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<pre style="margin: 0;">+<span id="LC414" class="line" lang="plaintext"> 'AM_PROG_CC_C_O' => 1,</span>
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415
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<pre style="margin: 0;">+<span id="LC415" class="line" lang="plaintext"> 'LT_LIB_M' => 1,</span>
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416
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<pre style="margin: 0;">+<span id="LC416" class="line" lang="plaintext"> 'AM_OUTPUT_DEPENDENCY_COMMANDS' => 1,</span>
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384
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417
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<pre style="margin: 0;"> <span id="LC417" class="line" lang="plaintext"> 'PKG_CHECK_MODULES_STATIC' => 1,</span>
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385
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<pre style="margin: 0;">-<span id="LC385" class="line" lang="plaintext"> 'AC_LIBTOOL_OBJDIR' => 1,</span>
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418
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<pre style="margin: 0;">+<span id="LC418" class="line" lang="plaintext"> '_LT_CC_BASENAME' => 1,</span>
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419
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<pre style="margin: 0;">+<span id="LC419" class="line" lang="plaintext"> 'AM_SUBST_NOTMAKE' => 1,</span>
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420
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<pre style="margin: 0;">+<span id="LC420" class="line" lang="plaintext"> 'AM_SET_DEPDIR' => 1,</span>
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421
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<pre style="margin: 0;">+<span id="LC421" class="line" lang="plaintext"> '_LT_AC_FILE_LTDLL_C' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="422" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
422
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<pre style="margin: 0;">+<span id="LC422" class="line" lang="plaintext"> '_AC_PROG_LIBTOOL' => 1,</span>
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423
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<pre style="margin: 0;">+<span id="LC423" class="line" lang="plaintext"> '_LT_WITH_SYSROOT' => 1,</span>
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424
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<pre style="margin: 0;">+<span id="LC424" class="line" lang="plaintext"> 'AC_PROG_NM' => 1,</span>
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425
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<pre style="margin: 0;">+<span id="LC425" class="line" lang="plaintext"> 'AC_PROG_LIBTOOL' => 1,</span>
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426
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<pre style="margin: 0;">+<span id="LC426" class="line" lang="plaintext"> 'AC_LTDL_SYSSEARCHPATH' => 1,</span>
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427
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<pre style="margin: 0;">+<span id="LC427" class="line" lang="plaintext"> '_LT_AC_LANG_GCJ' => 1,</span>
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428
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<pre style="margin: 0;">+<span id="LC428" class="line" lang="plaintext"> '_LT_PROG_CXX' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="429" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
429
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<pre style="margin: 0;">+<span id="LC429" class="line" lang="plaintext"> 'AC_LIBTOOL_F77' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="430" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
430
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<pre style="margin: 0;">+<span id="LC430" class="line" lang="plaintext"> 'AC_LIBTOOL_WIN32_DLL' => 1,</span>
</pre>
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431
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<pre style="margin: 0;">+<span id="LC431" class="line" lang="plaintext"> '_AM_DEPENDENCIES' => 1,</span>
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432
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<pre style="margin: 0;">+<span id="LC432" class="line" lang="plaintext"> 'AC_DISABLE_STATIC' => 1,</span>
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433
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<pre style="margin: 0;">+<span id="LC433" class="line" lang="plaintext"> 'AC_DEPLIBS_CHECK_METHOD' => 1,</span>
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434
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<pre style="margin: 0;">+<span id="LC434" class="line" lang="plaintext"> '_LT_AC_PROG_ECHO_BACKSLASH' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="435" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
435
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<pre style="margin: 0;">+<span id="LC435" class="line" lang="plaintext"> 'AC_PROG_LD_GNU' => 1,</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="436" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
436
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<pre style="margin: 0;">+<span id="LC436" class="line" lang="plaintext"> 'LT_SYS_MODULE_EXT' => 1,</span>
</pre>
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437
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<pre style="margin: 0;">+<span id="LC437" class="line" lang="plaintext"> '_AM_AUTOCONF_VERSION' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="438" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
438
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<pre style="margin: 0;">+<span id="LC438" class="line" lang="plaintext"> 'AC_LIBTOOL_LANG_F77_CONFIG' => 1,</span>
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439
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<pre style="margin: 0;">+<span id="LC439" class="line" lang="plaintext"> 'AX_OPENMP' => 1,</span>
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440
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<pre style="margin: 0;">+<span id="LC440" class="line" lang="plaintext"> 'AC_PROG_LD_RELOAD_FLAG' => 1,</span>
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441
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<pre style="margin: 0;">+<span id="LC441" class="line" lang="plaintext"> '_PKG_SHORT_ERRORS_SUPPORTED' => 1,</span>
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386
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442
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<pre style="margin: 0;"> <span id="LC442" class="line" lang="plaintext"> 'AM_CONFIG_HEADER' => 1,</span>
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387
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<pre style="margin: 0;">-<span id="LC387" class="line" lang="plaintext"> 'PKG_NOARCH_INSTALLDIR' => 1,</span>
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443
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<pre style="margin: 0;">+<span id="LC443" class="line" lang="plaintext"> 'AC_CHECK_LIBM' => 1,</span>
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444
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<pre style="margin: 0;">+<span id="LC444" class="line" lang="plaintext"> 'LT_LANG' => 1,</span>
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388
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445
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<pre style="margin: 0;"> <span id="LC445" class="line" lang="plaintext"> 'AC_LTDL_SYMBOL_USCORE' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="389" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
389
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<pre style="margin: 0;">-<span id="LC389" class="line" lang="plaintext"> 'AC_LTDL_SYS_DLOPEN_DEPLIBS' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="390" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
390
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<pre style="margin: 0;">-<span id="LC390" class="line" lang="plaintext"> 'AC_DEFUN' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="391" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
391
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<pre style="margin: 0;">-<span id="LC391" class="line" lang="plaintext"> 'LT_SYS_DLSEARCH_PATH' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="392" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
392
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<pre style="margin: 0;">-<span id="LC392" class="line" lang="plaintext"> '_LT_AC_FILE_LTDLL_C' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="393" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
393
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<pre style="margin: 0;">-<span id="LC393" class="line" lang="plaintext"> 'AM_DEP_TRACK' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="394" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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446
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<pre style="margin: 0;">+<span id="LC446" class="line" lang="plaintext"> 'AC_LTDL_SHLIBEXT' => 1,</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="394" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
394
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447
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<pre style="margin: 0;"> <span id="LC447" class="line" lang="plaintext"> 'AC_LIBTOOL_POSTDEP_PREDEP' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="395" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
395
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<pre style="margin: 0;">-<span id="LC395" class="line" lang="plaintext"> '_LT_AC_TAGVAR' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="396" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
396
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<pre style="margin: 0;">-<span id="LC396" class="line" lang="plaintext"> '_LT_PROG_FC' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="397" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
397
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<pre style="margin: 0;">-<span id="LC397" class="line" lang="plaintext"> 'AM_CONDITIONAL' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="398" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
398
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<td class="diff-line-num new_line old" data-linenumber="448" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC398" class="line" lang="plaintext"> 'PKG_CHECK_VAR' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="399" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
399
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<pre style="margin: 0;">-<span id="LC399" class="line" lang="plaintext"> 'AM_PROG_NM' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="400" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
400
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<td class="diff-line-num new_line old" data-linenumber="448" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC400" class="line" lang="plaintext"> 'AC_LIBLTDL_INSTALLABLE' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="401" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
401
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<td class="diff-line-num new_line old" data-linenumber="448" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC401" class="line" lang="plaintext"> 'AM_SUBST_NOTMAKE' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="402" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
402
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<td class="diff-line-num new_line old" data-linenumber="448" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC402" class="line" lang="plaintext"> 'AM_AUTOMAKE_VERSION' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="403" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
403
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<td class="diff-line-num new_line old" data-linenumber="448" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC403" class="line" lang="plaintext"> 'LT_SUPPORTED_TAG' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="404" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
404
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<td class="diff-line-num new_line old" data-linenumber="448" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC404" class="line" lang="plaintext"> 'AC_LIBTOOL_LANG_RC_CONFIG' => 1,</span>
</pre>
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405
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<pre style="margin: 0;">-<span id="LC405" class="line" lang="plaintext"> 'include' => 1,</span>
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406
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<pre style="margin: 0;">-<span id="LC406" class="line" lang="plaintext"> 'AC_LIBTOOL_DLOPEN_SELF' => 1,</span>
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407
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<pre style="margin: 0;">-<span id="LC407" class="line" lang="plaintext"> 'AX_OPENMP' => 1,</span>
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408
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<pre style="margin: 0;">-<span id="LC408" class="line" lang="plaintext"> '_AM_PROG_CC_C_O' => 1,</span>
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409
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<pre style="margin: 0;">-<span id="LC409" class="line" lang="plaintext"> '_LT_PROG_LTMAIN' => 1,</span>
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410
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<pre style="margin: 0;">-<span id="LC410" class="line" lang="plaintext"> 'LT_CMD_MAX_LEN' => 1,</span>
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411
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<pre style="margin: 0;">-<span id="LC411" class="line" lang="plaintext"> 'AC_LIBTOOL_LANG_F77_CONFIG' => 1,</span>
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448
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<pre style="margin: 0;">+<span id="LC448" class="line" lang="plaintext"> '_LT_PROG_ECHO_BACKSLASH' => 1,</span>
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449
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<pre style="margin: 0;">+<span id="LC449" class="line" lang="plaintext"> '_LT_AC_LANG_GCJ_CONFIG' => 1,</span>
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450
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<pre style="margin: 0;">+<span id="LC450" class="line" lang="plaintext"> 'AC_ENABLE_FAST_INSTALL' => 1,</span>
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451
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<pre style="margin: 0;">+<span id="LC451" class="line" lang="plaintext"> 'AC_PATH_MAGIC' => 1,</span>
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452
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<pre style="margin: 0;">+<span id="LC452" class="line" lang="plaintext"> 'LT_PROG_RC' => 1,</span>
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412
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453
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<pre style="margin: 0;"> <span id="LC453" class="line" lang="plaintext"> '_LT_AC_LANG_CXX_CONFIG' => 1,</span>
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413
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<pre style="margin: 0;">-<span id="LC413" class="line" lang="plaintext"> '_LT_LINKER_OPTION' => 1,</span>
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454
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<pre style="margin: 0;">+<span id="LC454" class="line" lang="plaintext"> '_LT_PROG_FC' => 1,</span>
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455
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<pre style="margin: 0;">+<span id="LC455" class="line" lang="plaintext"> '_LT_REQUIRED_DARWIN_CHECKS' => 1,</span>
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456
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<pre style="margin: 0;">+<span id="LC456" class="line" lang="plaintext"> '_LT_AC_SHELL_INIT' => 1,</span>
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457
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<pre style="margin: 0;">+<span id="LC457" class="line" lang="plaintext"> 'AM_MISSING_PROG' => 1,</span>
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458
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<pre style="margin: 0;">+<span id="LC458" class="line" lang="plaintext"> 'LT_FUNC_DLSYM_USCORE' => 1,</span>
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459
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<pre style="margin: 0;">+<span id="LC459" class="line" lang="plaintext"> 'AM_C_PROTOTYPES' => 1,</span>
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460
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<pre style="margin: 0;">+<span id="LC460" class="line" lang="plaintext"> '_AM_SET_OPTION' => 1,</span>
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414
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461
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<pre style="margin: 0;"> <span id="LC461" class="line" lang="plaintext"> '_LT_AC_TAGCONFIG' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="415" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
415
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<pre style="margin: 0;">-<span id="LC415" class="line" lang="plaintext"> 'LTSUGAR_VERSION' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="416" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
416
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<pre style="margin: 0;">-<span id="LC416" class="line" lang="plaintext"> 'AC_LIBTOOL_SETUP' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="417" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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462
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<pre style="margin: 0;">+<span id="LC462" class="line" lang="plaintext"> 'AC_LIBLTDL_CONVENIENCE' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="417" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="463" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
463
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<pre style="margin: 0;">+<span id="LC463" class="line" lang="plaintext"> '_LT_AC_TAGVAR' => 1,</span>
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<pre style="margin: 0;">+<span id="LC464" class="line" lang="plaintext"> 'AC_PROG_EGREP' => 1,</span>
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<pre style="margin: 0;">+<span id="LC465" class="line" lang="plaintext"> 'LT_SYS_DLOPEN_SELF' => 1,</span>
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466
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<pre style="margin: 0;">+<span id="LC466" class="line" lang="plaintext"> 'AC_LIBTOOL_SYS_LIB_STRIP' => 1,</span>
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467
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<pre style="margin: 0;">+<span id="LC467" class="line" lang="plaintext"> 'AC_LIBTOOL_PROG_CC_C_O' => 1,</span>
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<pre style="margin: 0;">+<span id="LC468" class="line" lang="plaintext"> 'LT_LIB_DLLOAD' => 1,</span>
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<pre style="margin: 0;">+<span id="LC469" class="line" lang="plaintext"> 'LT_AC_PROG_SED' => 1,</span>
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<pre style="margin: 0;">+<span id="LC470" class="line" lang="plaintext"> 'AC_LIBTOOL_LANG_CXX_CONFIG' => 1,</span>
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<pre style="margin: 0;">+<span id="LC471" class="line" lang="plaintext"> '_LT_AC_LANG_CXX' => 1,</span>
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<pre style="margin: 0;">+<span id="LC472" class="line" lang="plaintext"> 'AC_LIBTOOL_SYS_DYNAMIC_LINKER' => 1,</span>
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<pre style="margin: 0;">+<span id="LC473" class="line" lang="plaintext"> 'AM_AUX_DIR_EXPAND' => 1,</span>
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<pre style="margin: 0;">+<span id="LC474" class="line" lang="plaintext"> '_LT_AC_SYS_COMPILER' => 1,</span>
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<pre style="margin: 0;">+<span id="LC475" class="line" lang="plaintext"> 'PKG_CHECK_EXISTS' => 1,</span>
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417
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<pre style="margin: 0;"> <span id="LC476" class="line" lang="plaintext"> 'LT_PATH_LD' => 1,</span>
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418
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<pre style="margin: 0;">-<span id="LC418" class="line" lang="plaintext"> 'AC_DEFUN_ONCE' => 1,</span>
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419
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<pre style="margin: 0;">-<span id="LC419" class="line" lang="plaintext"> 'AC_LIBTOOL_FC' => 1,</span>
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<pre style="margin: 0;">-<span id="LC420" class="line" lang="plaintext"> 'AC_LIBTOOL_PROG_COMPILER_NO_RTTI' => 1,</span>
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<pre style="margin: 0;">-<span id="LC421" class="line" lang="plaintext"> '_LT_AC_SYS_LIBPATH_AIX' => 1,</span>
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<pre style="margin: 0;">-<span id="LC422" class="line" lang="plaintext"> 'AC_LTDL_SHLIBPATH' => 1,</span>
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<pre style="margin: 0;">-<span id="LC423" class="line" lang="plaintext"> '_PKG_SHORT_ERRORS_SUPPORTED' => 1,</span>
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<pre style="margin: 0;">-<span id="LC424" class="line" lang="plaintext"> 'AC_LTDL_SYSSEARCHPATH' => 1,</span>
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<pre style="margin: 0;">-<span id="LC425" class="line" lang="plaintext"> 'AM_ENABLE_SHARED' => 1,</span>
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<pre style="margin: 0;">-<span id="LC426" class="line" lang="plaintext"> 'AC_LIBTOOL_SYS_HARD_LINK_LOCKS' => 1,</span>
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<pre style="margin: 0;">+<span id="LC477" class="line" lang="plaintext"> 'AC_WITH_LTDL' => 1,</span>
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<pre style="margin: 0;">+<span id="LC478" class="line" lang="plaintext"> 'AC_LIBLTDL_INSTALLABLE' => 1,</span>
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427
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479
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<pre style="margin: 0;"> <span id="LC479" class="line" lang="plaintext"> '_LT_AC_CHECK_DLFCN' => 1,</span>
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428
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<pre style="margin: 0;">-<span id="LC428" class="line" lang="plaintext"> '_LT_AC_LANG_F77' => 1,</span>
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429
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<pre style="margin: 0;">-<span id="LC429" class="line" lang="plaintext"> 'AM_PROG_INSTALL_STRIP' => 1,</span>
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430
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<pre style="margin: 0;">-<span id="LC430" class="line" lang="plaintext"> 'LT_PROG_RC' => 1,</span>
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480
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<pre style="margin: 0;">+<span id="LC480" class="line" lang="plaintext"> 'AC_CONFIG_MACRO_DIR' => 1,</span>
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431
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481
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<pre style="margin: 0;"> <span id="LC481" class="line" lang="plaintext"> '_AM_IF_OPTION' => 1,</span>
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432
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<pre style="margin: 0;">-<span id="LC432" class="line" lang="plaintext"> 'AM_SANITY_CHECK' => 1,</span>
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433
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<pre style="margin: 0;">-<span id="LC433" class="line" lang="plaintext"> '_LT_DLL_DEF_P' => 1,</span>
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434
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<pre style="margin: 0;">-<span id="LC434" class="line" lang="plaintext"> 'LT_AC_PROG_EGREP' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="435" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
435
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<pre style="margin: 0;">-<span id="LC435" class="line" lang="plaintext"> 'AM_OUTPUT_DEPENDENCY_COMMANDS' => 1,</span>
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436
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<pre style="margin: 0;">-<span id="LC436" class="line" lang="plaintext"> 'AC_LIBTOOL_SYS_GLOBAL_SYMBOL_PIPE' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="437" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
437
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<pre style="margin: 0;">-<span id="LC437" class="line" lang="plaintext"> 'LT_LIB_M' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="438" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
438
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<pre style="margin: 0;">-<span id="LC438" class="line" lang="plaintext"> 'fp_C_PROTOTYPES' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="439" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
439
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<pre style="margin: 0;">-<span id="LC439" class="line" lang="plaintext"> 'PKG_CHECK_MODULES' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="440" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
440
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<pre style="margin: 0;">-<span id="LC440" class="line" lang="plaintext"> 'AM_MISSING_PROG' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="441" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
441
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<pre style="margin: 0;">-<span id="LC441" class="line" lang="plaintext"> 'LT_WITH_LTDL' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="442" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
442
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<pre style="margin: 0;">-<span id="LC442" class="line" lang="plaintext"> 'LT_SYS_SYMBOL_USCORE' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="443" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
443
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<pre style="margin: 0;">-<span id="LC443" class="line" lang="plaintext"> 'AM_SILENT_RULES' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="444" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
444
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<td class="diff-line-num new_line old" data-linenumber="482" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC444" class="line" lang="plaintext"> '_LT_AC_LANG_F77_CONFIG' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="445" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
445
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<td class="diff-line-num new_line old" data-linenumber="482" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC445" class="line" lang="plaintext"> 'LTDL_INSTALLABLE' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="446" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
446
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<td class="diff-line-num new_line old" data-linenumber="482" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC446" class="line" lang="plaintext"> '_AC_PROG_LIBTOOL' => 1,</span>
</pre>
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447
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<td class="diff-line-num new_line old" data-linenumber="482" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC447" class="line" lang="plaintext"> 'AC_LIBTOOL_WIN32_DLL' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="448" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
448
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<td class="diff-line-num new_line old" data-linenumber="482" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC448" class="line" lang="plaintext"> 'm4_pattern_forbid' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="449" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
449
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<td class="diff-line-num new_line old" data-linenumber="482" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC449" class="line" lang="plaintext"> 'AC_LIBTOOL_COMPILER_OPTION' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="450" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
450
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<td class="diff-line-num new_line old" data-linenumber="482" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC450" class="line" lang="plaintext"> 'LT_FUNC_ARGZ' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="451" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
451
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<td class="diff-line-num new_line old" data-linenumber="482" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC451" class="line" lang="plaintext"> '_LT_AC_SYS_COMPILER' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="452" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
452
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<td class="diff-line-num new_line old" data-linenumber="482" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC452" class="line" lang="plaintext"> 'PKG_INSTALLDIR' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="453" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
453
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<pre style="margin: 0;">-<span id="LC453" class="line" lang="plaintext"> '_LT_PROG_CXX' => 1,</span>
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454
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<pre style="margin: 0;">-<span id="LC454" class="line" lang="plaintext"> 'LT_INIT' => 1,</span>
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455
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<pre style="margin: 0;">-<span id="LC455" class="line" lang="plaintext"> '_AC_AM_CONFIG_HEADER_HOOK' => 1,</span>
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456
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<pre style="margin: 0;">-<span id="LC456" class="line" lang="plaintext"> 'AM_DISABLE_SHARED' => 1,</span>
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457
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<pre style="margin: 0;">-<span id="LC457" class="line" lang="plaintext"> '_AM_PROG_TAR' => 1,</span>
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458
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<pre style="margin: 0;">-<span id="LC458" class="line" lang="plaintext"> 'AC_LIBTOOL_PROG_CC_C_O' => 1,</span>
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459
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<pre style="margin: 0;">-<span id="LC459" class="line" lang="plaintext"> 'AC_PROG_LD' => 1,</span>
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460
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<pre style="margin: 0;">-<span id="LC460" class="line" lang="plaintext"> 'LT_FUNC_DLSYM_USCORE' => 1,</span>
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482
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<pre style="margin: 0;">+<span id="LC482" class="line" lang="plaintext"> '_LT_AC_LANG_RC_CONFIG' => 1,</span>
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483
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<pre style="margin: 0;">+<span id="LC483" class="line" lang="plaintext"> 'AC_DEFUN_ONCE' => 1,</span>
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484
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<pre style="margin: 0;">+<span id="LC484" class="line" lang="plaintext"> 'AC_LIBTOOL_PROG_COMPILER_PIC' => 1,</span>
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485
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<pre style="margin: 0;">+<span id="LC485" class="line" lang="plaintext"> 'LTOPTIONS_VERSION' => 1,</span>
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486
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<pre style="margin: 0;">+<span id="LC486" class="line" lang="plaintext"> 'LT_CMD_MAX_LEN' => 1,</span>
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487
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<pre style="margin: 0;">+<span id="LC487" class="line" lang="plaintext"> 'AC_LIBTOOL_LANG_RC_CONFIG' => 1,</span>
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488
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<pre style="margin: 0;">+<span id="LC488" class="line" lang="plaintext"> 'AC_LTDL_SYS_DLOPEN_DEPLIBS' => 1,</span>
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489
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<pre style="margin: 0;">+<span id="LC489" class="line" lang="plaintext"> 'AM_INIT_AUTOMAKE' => 1,</span>
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490
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<pre style="margin: 0;">+<span id="LC490" class="line" lang="plaintext"> 'AC_PATH_TOOL_PREFIX' => 1,</span>
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491
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<pre style="margin: 0;">+<span id="LC491" class="line" lang="plaintext"> '_LT_AC_LANG_F77' => 1,</span>
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492
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<pre style="margin: 0;">+<span id="LC492" class="line" lang="plaintext"> 'AC_LTDL_PREOPEN' => 1,</span>
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493
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<pre style="margin: 0;">+<span id="LC493" class="line" lang="plaintext"> 'LTDL_CONVENIENCE' => 1,</span>
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494
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<pre style="margin: 0;">+<span id="LC494" class="line" lang="plaintext"> 'AM_PROG_LD' => 1,</span>
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495
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<pre style="margin: 0;">+<span id="LC495" class="line" lang="plaintext"> 'm4_pattern_allow' => 1,</span>
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496
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<pre style="margin: 0;">+<span id="LC496" class="line" lang="plaintext"> 'AC_DISABLE_FAST_INSTALL' => 1,</span>
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497
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<pre style="margin: 0;">+<span id="LC497" class="line" lang="plaintext"> '_m4_warn' => 1,</span>
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498
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<pre style="margin: 0;">+<span id="LC498" class="line" lang="plaintext"> '_AM_SET_OPTIONS' => 1,</span>
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461
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499
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<pre style="margin: 0;"> <span id="LC499" class="line" lang="plaintext"> 'AC_LIBTOOL_LANG_C_CONFIG' => 1,</span>
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462
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<pre style="margin: 0;">-<span id="LC462" class="line" lang="plaintext"> 'AC_DEPLIBS_CHECK_METHOD' => 1,</span>
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463
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<pre style="margin: 0;">-<span id="LC463" class="line" lang="plaintext"> 'PKG_CHECK_EXISTS' => 1,</span>
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500
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<pre style="margin: 0;">+<span id="LC500" class="line" lang="plaintext"> 'LT_PROG_GO' => 1,</span>
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501
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<pre style="margin: 0;">+<span id="LC501" class="line" lang="plaintext"> '_LTDL_SETUP' => 1,</span>
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502
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<pre style="margin: 0;">+<span id="LC502" class="line" lang="plaintext"> '_AM_SUBST_NOTMAKE' => 1,</span>
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503
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<pre style="margin: 0;">+<span id="LC503" class="line" lang="plaintext"> 'AC_LTDL_DLLIB' => 1,</span>
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504
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<pre style="margin: 0;">+<span id="LC504" class="line" lang="plaintext"> 'LT_CONFIG_LTDL_DIR' => 1,</span>
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505
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<pre style="margin: 0;">+<span id="LC505" class="line" lang="plaintext"> 'AM_AUTOMAKE_VERSION' => 1,</span>
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464
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506
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<pre style="margin: 0;"> <span id="LC506" class="line" lang="plaintext"> 'LT_SYS_DLOPEN_DEPLIBS' => 1,</span>
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465
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<pre style="margin: 0;">-<span id="LC465" class="line" lang="plaintext"> 'LTDL_INIT' => 1,</span>
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466
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<pre style="margin: 0;">-<span id="LC466" class="line" lang="plaintext"> 'm4_pattern_allow' => 1,</span>
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467
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<pre style="margin: 0;">-<span id="LC467" class="line" lang="plaintext"> '_LT_AC_LANG_CXX' => 1,</span>
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468
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<pre style="margin: 0;">-<span id="LC468" class="line" lang="plaintext"> '_LT_PREPARE_SED_QUOTE_VARS' => 1,</span>
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469
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<pre style="margin: 0;">-<span id="LC469" class="line" lang="plaintext"> '_LT_REQUIRED_DARWIN_CHECKS' => 1,</span>
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470
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<pre style="margin: 0;">-<span id="LC470" class="line" lang="plaintext"> 'AC_LIBTOOL_PROG_COMPILER_PIC' => 1,</span>
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471
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<pre style="margin: 0;">-<span id="LC471" class="line" lang="plaintext"> 'AC_LIBTOOL_CONFIG' => 1,</span>
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507
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<pre style="margin: 0;">+<span id="LC507" class="line" lang="plaintext"> '_LT_PATH_TOOL_PREFIX' => 1,</span>
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508
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<pre style="margin: 0;">+<span id="LC508" class="line" lang="plaintext"> 'm4_pattern_forbid' => 1,</span>
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509
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<pre style="margin: 0;">+<span id="LC509" class="line" lang="plaintext"> 'AM_DEP_TRACK' => 1,</span>
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510
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<pre style="margin: 0;">+<span id="LC510" class="line" lang="plaintext"> 'AC_LIBTOOL_SETUP' => 1,</span>
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511
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<pre style="margin: 0;">+<span id="LC511" class="line" lang="plaintext"> 'LT_OUTPUT' => 1,</span>
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512
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<pre style="margin: 0;">+<span id="LC512" class="line" lang="plaintext"> 'AC_LIBTOOL_SYS_GLOBAL_SYMBOL_PIPE' => 1,</span>
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513
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<pre style="margin: 0;">+<span id="LC513" class="line" lang="plaintext"> 'LT_AC_PROG_EGREP' => 1,</span>
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514
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<pre style="margin: 0;">+<span id="LC514" class="line" lang="plaintext"> 'AU_DEFUN' => 1,</span>
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515
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<pre style="margin: 0;">+<span id="LC515" class="line" lang="plaintext"> 'AC_LIBTOOL_LANG_GCJ_CONFIG' => 1,</span>
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516
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<pre style="margin: 0;">+<span id="LC516" class="line" lang="plaintext"> '_LT_LINKER_BOILERPLATE' => 1,</span>
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517
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<pre style="margin: 0;">+<span id="LC517" class="line" lang="plaintext"> '_LT_AC_PROG_CXXCPP' => 1,</span>
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518
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<pre style="margin: 0;">+<span id="LC518" class="line" lang="plaintext"> 'LT_AC_PROG_GCJ' => 1,</span>
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519
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<pre style="margin: 0;">+<span id="LC519" class="line" lang="plaintext"> 'LT_SYS_MODULE_PATH' => 1,</span>
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520
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<pre style="margin: 0;">+<span id="LC520" class="line" lang="plaintext"> '_AM_CONFIG_MACRO_DIRS' => 1,</span>
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472
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521
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<pre style="margin: 0;"> <span id="LC521" class="line" lang="plaintext"> 'AC_CONFIG_MACRO_DIR_TRACE' => 1,</span>
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473
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522
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<pre style="margin: 0;"> <span id="LC522" class="line" lang="plaintext"> '_LT_PROG_F77' => 1,</span>
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474
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<pre style="margin: 0;">-<span id="LC474" class="line" lang="plaintext"> '_LT_AC_LANG_RC_CONFIG' => 1,</span>
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475
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<pre style="margin: 0;">-<span id="LC475" class="line" lang="plaintext"> 'LT_PATH_NM' => 1,</span>
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476
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<pre style="margin: 0;">-<span id="LC476" class="line" lang="plaintext"> '_AM_SET_OPTIONS' => 1,</span>
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477
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<pre style="margin: 0;">-<span id="LC477" class="line" lang="plaintext"> 'LT_AC_PROG_RC' => 1,</span>
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478
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523
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<pre style="margin: 0;"> <span id="LC523" class="line" lang="plaintext"> 'AC_LIBTOOL_PICMODE' => 1,</span>
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479
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<pre style="margin: 0;">-<span id="LC479" class="line" lang="plaintext"> 'AC_PROG_LIBTOOL' => 1,</span>
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480
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<pre style="margin: 0;">-<span id="LC480" class="line" lang="plaintext"> 'LT_AC_PROG_GCJ' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="481" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
481
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<pre style="margin: 0;">-<span id="LC481" class="line" lang="plaintext"> 'AC_PROG_EGREP' => 1,</span>
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482
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<pre style="margin: 0;">-<span id="LC482" class="line" lang="plaintext"> 'AM_MAKE_INCLUDE' => 1,</span>
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483
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<pre style="margin: 0;">-<span id="LC483" class="line" lang="plaintext"> '_LT_LINKER_BOILERPLATE' => 1,</span>
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484
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<pre style="margin: 0;">-<span id="LC484" class="line" lang="plaintext"> 'LTOPTIONS_VERSION' => 1,</span>
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485
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<pre style="margin: 0;">-<span id="LC485" class="line" lang="plaintext"> '_LT_AC_SHELL_INIT' => 1,</span>
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486
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<pre style="margin: 0;">-<span id="LC486" class="line" lang="plaintext"> 'AC_LTDL_DLLIB' => 1,</span>
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487
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<pre style="margin: 0;">-<span id="LC487" class="line" lang="plaintext"> 'LT_AC_PROG_SED' => 1,</span>
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524
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<pre style="margin: 0;">+<span id="LC524" class="line" lang="plaintext"> 'AC_LTDL_ENABLE_INSTALL' => 1,</span>
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488
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525
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<pre style="margin: 0;"> <span id="LC525" class="line" lang="plaintext"> 'AC_LIBTOOL_LINKER_OPTION' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="489" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
489
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<pre style="margin: 0;">-<span id="LC489" class="line" lang="plaintext"> 'AC_LTDL_OBJDIR' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="490" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
490
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<pre style="margin: 0;">-<span id="LC490" class="line" lang="plaintext"> 'AC_LIBTOOL_PROG_LD_SHLIBS' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="491" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
491
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<pre style="margin: 0;">-<span id="LC491" class="line" lang="plaintext"> 'PKG_PROG_PKG_CONFIG' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="492" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
492
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<pre style="margin: 0;">-<span id="LC492" class="line" lang="plaintext"> 'AC_LTDL_DLSYM_USCORE' => 1,</span>
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493
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<pre style="margin: 0;">-<span id="LC493" class="line" lang="plaintext"> '_AM_SET_OPTION' => 1,</span>
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494
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<pre style="margin: 0;">-<span id="LC494" class="line" lang="plaintext"> 'AC_LTDL_SHLIBEXT' => 1,</span>
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495
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<pre style="margin: 0;">-<span id="LC495" class="line" lang="plaintext"> 'AC_LIBTOOL_F77' => 1,</span>
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496
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<pre style="margin: 0;">-<span id="LC496" class="line" lang="plaintext"> '_AM_DEPENDENCIES' => 1,</span>
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497
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<pre style="margin: 0;">-<span id="LC497" class="line" lang="plaintext"> 'AM_PROG_INSTALL_SH' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="498" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
498
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<pre style="margin: 0;">-<span id="LC498" class="line" lang="plaintext"> '_LT_CC_BASENAME' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="499" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
499
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<pre style="margin: 0;">-<span id="LC499" class="line" lang="plaintext"> '_LT_AC_LANG_C_CONFIG' => 1,</span>
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500
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<pre style="margin: 0;">-<span id="LC500" class="line" lang="plaintext"> 'AC_LIBTOOL_LANG_CXX_CONFIG' => 1,</span>
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501
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<pre style="margin: 0;">-<span id="LC501" class="line" lang="plaintext"> 'AC_PATH_MAGIC' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="502" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
502
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<pre style="margin: 0;">-<span id="LC502" class="line" lang="plaintext"> 'LT_LIB_DLLOAD' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="503" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
503
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<pre style="margin: 0;">-<span id="LC503" class="line" lang="plaintext"> '_LT_AC_LANG_GCJ_CONFIG' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="504" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
504
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<pre style="margin: 0;">-<span id="LC504" class="line" lang="plaintext"> 'LT_PROG_GCJ' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="505" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
505
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<pre style="margin: 0;">-<span id="LC505" class="line" lang="plaintext"> 'AM_PROG_LD' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="506" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
506
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<pre style="margin: 0;">-<span id="LC506" class="line" lang="plaintext"> 'AM_PROG_CC_C_O' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="507" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
507
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<pre style="margin: 0;">-<span id="LC507" class="line" lang="plaintext"> 'AM_PROG_LIBTOOL' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="508" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
508
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<pre style="margin: 0;">-<span id="LC508" class="line" lang="plaintext"> '_LT_AC_PROG_CXXCPP' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="509" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
509
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<pre style="margin: 0;">-<span id="LC509" class="line" lang="plaintext"> 'AM_ENABLE_STATIC' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="510" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
510
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<pre style="margin: 0;">-<span id="LC510" class="line" lang="plaintext"> '_m4_warn' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="511" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
511
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<pre style="margin: 0;">-<span id="LC511" class="line" lang="plaintext"> '_LT_LIBOBJ' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="512" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
512
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<pre style="margin: 0;">-<span id="LC512" class="line" lang="plaintext"> 'AC_ENABLE_STATIC' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="513" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
513
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<pre style="margin: 0;">-<span id="LC513" class="line" lang="plaintext"> 'AC_PATH_TOOL_PREFIX' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="514" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
514
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<pre style="margin: 0;">-<span id="LC514" class="line" lang="plaintext"> 'LT_OUTPUT' => 1,</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="515" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
515
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<pre style="margin: 0;">-<span id="LC515" class="line" lang="plaintext"> '_LTDL_SETUP' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="516" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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526
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<pre style="margin: 0;">+<span id="LC526" class="line" lang="plaintext"> 'LT_PATH_NM' => 1,</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="516" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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527
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<pre style="margin: 0;">+<span id="LC527" class="line" lang="plaintext"> 'AM_MAKE_INCLUDE' => 1,</span>
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528
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<pre style="margin: 0;">+<span id="LC528" class="line" lang="plaintext"> 'AC_LIBTOOL_CONFIG' => 1,</span>
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529
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<pre style="margin: 0;">+<span id="LC529" class="line" lang="plaintext"> 'AC_LIBTOOL_DLOPEN_SELF' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="530" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
530
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<pre style="margin: 0;">+<span id="LC530" class="line" lang="plaintext"> 'AC_LIBTOOL_SYS_HARD_LINK_LOCKS' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="516" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="531" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
531
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<pre style="margin: 0;">+<span id="LC531" class="line" lang="plaintext"> '_AM_PROG_CC_C_O' => 1,</span>
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532
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<pre style="margin: 0;">+<span id="LC532" class="line" lang="plaintext"> 'LTDL_INSTALLABLE' => 1,</span>
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533
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<pre style="margin: 0;">+<span id="LC533" class="line" lang="plaintext"> 'AC_LIBTOOL_SYS_MAX_CMD_LEN' => 1,</span>
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516
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534
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<pre style="margin: 0;"> <span id="LC534" class="line" lang="plaintext"> 'AM_SET_LEADING_DOT' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="517" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
517
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<pre style="margin: 0;">-<span id="LC517" class="line" lang="plaintext"> '<span class="idiff left right">_LT_AC_LOCK</span>' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="518" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
518
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<pre style="margin: 0;">-<span id="LC518" class="line" lang="plaintext"> '<span class="idiff left right">AC_DISABLE_STATIC</span>' => 1,</span>
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519
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<pre style="margin: 0;">-<span id="LC519" class="line" lang="plaintext"> '<span class="idiff left right">AM_AUX_DIR_EXPAND</span>' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="520" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
520
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<pre style="margin: 0;">-<span id="LC520" class="line" lang="plaintext"> '<span class="idiff left right">AC_LIBTOOL_PROG_LD_HARDCODE_LIBPATH</span>' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="521" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
521
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<td class="diff-line-num new_line old" data-linenumber="535" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC521" class="line" lang="plaintext"> 'AC_<span class="idiff left right">PROG_LD_RELOAD_FLAG</span>' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="522" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
522
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<td class="diff-line-num new_line old" data-linenumber="535" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC522" class="line" lang="plaintext"> '<span class="idiff left right">_LT_PROG_ECHO_BACKSLASH</span>' => 1,</span>
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<td class="diff-line-num new old_line" data-linenumber="523" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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535
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<pre style="margin: 0;">+<span id="LC535" class="line" lang="plaintext"> '<span class="idiff left right">AM_PROG_INSTALL_SH</span>' => 1,</span>
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536
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<pre style="margin: 0;">+<span id="LC536" class="line" lang="plaintext"> '<span class="idiff left right">_AM_MANGLE_OPTION</span>' => 1,</span>
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537
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<pre style="margin: 0;">+<span id="LC537" class="line" lang="plaintext"> '<span class="idiff left right">PKG_NOARCH_INSTALLDIR</span>' => 1,</span>
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538
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<pre style="margin: 0;">+<span id="LC538" class="line" lang="plaintext"> '<span class="idiff left right">_LT_AC_SYS_LIBPATH_AIX</span>' => 1,</span>
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539
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<pre style="margin: 0;">+<span id="LC539" class="line" lang="plaintext"> 'AC_<span class="idiff left right">LIBTOOL_OBJDIR</span>' => 1,</span>
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<td class="diff-line-num new new_line" data-linenumber="540" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
540
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<pre style="margin: 0;">+<span id="LC540" class="line" lang="plaintext"> '<span class="idiff left right">AM_DISABLE_STATIC</span>' => 1,</span>
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523
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541
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<pre style="margin: 0;"> <span id="LC541" class="line" lang="plaintext"> '_LT_COMPILER_BOILERPLATE' => 1,</span>
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524
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<td class="diff-line-num new_line old" data-linenumber="542" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC524" class="line" lang="plaintext"> 'LTVERSION_VERSION' => 1,</span>
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525
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<td class="diff-line-num new_line old" data-linenumber="542" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC525" class="line" lang="plaintext"> 'AM_C_PROTOTYPES' => 1,</span>
</pre>
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526
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<pre style="margin: 0;">-<span id="LC526" class="line" lang="plaintext"> 'AC_CONFIG_MACRO_DIR' => 1,</span>
</pre>
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542
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<pre style="margin: 0;">+<span id="LC542" class="line" lang="plaintext"> 'LT_AC_PROG_RC' => 1,</span>
</pre>
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543
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<pre style="margin: 0;">+<span id="LC543" class="line" lang="plaintext"> 'AC_DEFUN' => 1,</span>
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<pre style="margin: 0;">+<span id="LC544" class="line" lang="plaintext"> '_LT_PROG_LTMAIN' => 1,</span>
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545
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<pre style="margin: 0;">+<span id="LC545" class="line" lang="plaintext"> 'AM_SET_CURRENT_AUTOMAKE_VERSION' => 1,</span>
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527
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546
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<pre style="margin: 0;"> <span id="LC546" class="line" lang="plaintext"> 'AC_ENABLE_SHARED' => 1,</span>
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528
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<pre style="margin: 0;">-<span id="LC528" class="line" lang="plaintext"> 'LTOBSOLETE_VERSION' => 1,</span>
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529
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<pre style="margin: 0;">-<span id="LC529" class="line" lang="plaintext"> 'AC_LIBTOOL_SYS_MAX_CMD_LEN' => 1,</span>
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530
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<pre style="margin: 0;">-<span id="LC530" class="line" lang="plaintext"> 'AM_MISSING_HAS_RUN' => 1,</span>
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531
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<pre style="margin: 0;">-<span id="LC531" class="line" lang="plaintext"> 'AC_PROG_NM' => 1,</span>
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532
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<pre style="margin: 0;">-<span id="LC532" class="line" lang="plaintext"> 'AM_DISABLE_STATIC' => 1,</span>
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533
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<pre style="margin: 0;">-<span id="LC533" class="line" lang="plaintext"> 'AC_LIBLTDL_CONVENIENCE' => 1,</span>
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534
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<pre style="margin: 0;">-<span id="LC534" class="line" lang="plaintext"> '_LT_AC_TRY_DLOPEN_SELF' => 1,</span>
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535
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<pre style="margin: 0;">-<span id="LC535" class="line" lang="plaintext"> 'AC_LIBTOOL_GCJ' => 1,</span>
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536
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<pre style="margin: 0;">-<span id="LC536" class="line" lang="plaintext"> 'AC_LIBTOOL_SYS_DYNAMIC_LINKER' => 1,</span>
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<td class="diff-line-num old old_line" data-linenumber="537" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
537
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<pre style="margin: 0;">-<span id="LC537" class="line" lang="plaintext"> 'AC_LIBTOOL_SYS_LIB_STRIP' => 1,</span>
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538
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<pre style="margin: 0;">-<span id="LC538" class="line" lang="plaintext"> 'AM_PROG_CC_STDC' => 1,</span>
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539
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<pre style="margin: 0;">-<span id="LC539" class="line" lang="plaintext"> 'LT_PROG_GO' => 1,</span>
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540
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<pre style="margin: 0;">-<span id="LC540" class="line" lang="plaintext"> '_LT_AC_PROG_ECHO_BACKSLASH' => 1,</span>
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541
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<pre style="margin: 0;">-<span id="LC541" class="line" lang="plaintext"> 'AM_RUN_LOG' => 1,</span>
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542
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<pre style="margin: 0;">-<span id="LC542" class="line" lang="plaintext"> 'AC_LTDL_PREOPEN' => 1,</span>
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543
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<pre style="margin: 0;">-<span id="LC543" class="line" lang="plaintext"> 'AC_CHECK_LIBM' => 1,</span>
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<pre style="margin: 0;">-<span id="LC544" class="line" lang="plaintext"> '_LT_AC_LANG_GCJ' => 1,</span>
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<pre style="margin: 0;">-<span id="LC545" class="line" lang="plaintext"> 'AC_DISABLE_SHARED' => 1,</span>
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<pre style="margin: 0;">-<span id="LC546" class="line" lang="plaintext"> '_AM_CONFIG_MACRO_DIRS' => 1,</span>
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<pre style="margin: 0;">-<span id="LC547" class="line" lang="plaintext"> 'AC_PROG_LD_GNU' => 1</span>
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<pre style="margin: 0;">+<span id="LC547" class="line" lang="plaintext"> '_LT_AC_TRY_DLOPEN_SELF' => 1</span>
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548
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<pre style="margin: 0;"> <span id="LC548" class="line" lang="plaintext"> }</span>
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549
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<pre style="margin: 0;"> <span id="LC549" class="line" lang="plaintext"> ], 'Autom4te::Request' )</span>
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<pre style="margin: 0;"> <span id="LC550" class="line" lang="plaintext"> );</span>
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<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#b963683c5362dd156ab8704a64df661f00f5dfbc"><strong>autom4te.cache/traces.1</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,7 +4,7 @@ m4trace:aclocal.m4:1460: -1- m4_include([m4/ltoptions.m4])</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">m4trace:aclocal.m4:1461: -1- m4_include([m4/ltsugar.m4])</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">m4trace:aclocal.m4:1462: -1- m4_include([m4/ltversion.m4])</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">m4trace:aclocal.m4:1463: -1- m4_include([m4/lt~obsolete.m4])</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">m4trace:configure.ac:1: -1- AC_INIT([libmaus2], [2.0.65<span class="idiff left right">3</span>], [tischler@mpi-cbg.de], [libmaus2], [https://github.com/gt1/libmaus2])</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">m4trace:configure.ac:1: -1- AC_INIT([libmaus2], [2.0.65<span class="idiff left right">7</span>], [tischler@mpi-cbg.de], [libmaus2], [https://github.com/gt1/libmaus2])</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">m4trace:configure.ac:1: -1- m4_pattern_forbid([^_?A[CHUM]_])</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">m4trace:configure.ac:1: -1- m4_pattern_forbid([_AC_])</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext">m4trace:configure.ac:1: -1- m4_pattern_forbid([^LIBOBJS$], [do not use LIBOBJS directly, use AC_LIBOBJ (see section `AC_LIBOBJ vs LIBOBJS'])</span>
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<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#09be8533ff0a6ee5d577f971145ed449399fcda4"><strong>configure</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#! /bin/sh</span></span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Guess values for system-dependent variables and create Makefiles.</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Generated by GNU Autoconf 2.69 for libmaus2 2.0.65<span class="idiff left right">3</span>.</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Generated by GNU Autoconf 2.69 for libmaus2 2.0.65<span class="idiff left right">7</span>.</span></span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Report bugs to <tischler@mpi-cbg.de>.</span></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;">#</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="590" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -590,8 +590,8 @@ MAKEFLAGS=</td>
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<pre style="margin: 0;"> <span id="LC590" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Identity of this package.</span></span>
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<pre style="margin: 0;"> <span id="LC591" class="line" lang="shell"><span class="nv" style="color: #008080;">PACKAGE_NAME</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'libmaus2'</span></span>
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592
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<pre style="margin: 0;"> <span id="LC592" class="line" lang="shell"><span class="nv" style="color: #008080;">PACKAGE_TARNAME</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'libmaus2'</span></span>
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593
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<pre style="margin: 0;">-<span id="LC593" class="line" lang="shell"><span class="nv" style="color: #008080;">PACKAGE_VERSION</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'2.0.65<span class="idiff left right">3</span>'</span></span>
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594
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<pre style="margin: 0;">-<span id="LC594" class="line" lang="shell"><span class="nv" style="color: #008080;">PACKAGE_STRING</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'libmaus2 2.0.65<span class="idiff left right">3</span>'</span></span>
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593
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<pre style="margin: 0;">+<span id="LC593" class="line" lang="shell"><span class="nv" style="color: #008080;">PACKAGE_VERSION</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'2.0.65<span class="idiff left right">7</span>'</span></span>
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594
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<pre style="margin: 0;">+<span id="LC594" class="line" lang="shell"><span class="nv" style="color: #008080;">PACKAGE_STRING</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'libmaus2 2.0.65<span class="idiff left right">7</span>'</span></span>
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595
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595
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<pre style="margin: 0;"> <span id="LC595" class="line" lang="shell"><span class="nv" style="color: #008080;">PACKAGE_BUGREPORT</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'tischler@mpi-cbg.de'</span></span>
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596
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596
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<pre style="margin: 0;"> <span id="LC596" class="line" lang="shell"><span class="nv" style="color: #008080;">PACKAGE_URL</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'https://github.com/gt1/libmaus2'</span></span>
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597
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597
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<pre style="margin: 0;"> <span id="LC597" class="line" lang="shell"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1609" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1609" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1609,7 +1609,7 @@ if test "$ac_init_help" = "long"; then</td>
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1609
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1609
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<pre style="margin: 0;"> <span id="LC1609" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># Omit some internal or obsolete options to make the list less imposing.</span></span>
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1610
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1610
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<pre style="margin: 0;"> <span id="LC1610" class="line" lang="shell"> <span class="c" style="color: #998; font-style: italic;"># This message is too long to be a string in the A/UX 3.1 sh.</span></span>
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1611
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1611
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<pre style="margin: 0;"> <span id="LC1611" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">cat</span> <span class="o" style="font-weight: 600;"><<</span><span class="no" style="color: #008080;">_ACEOF</span></span>
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1612
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<pre style="margin: 0;">-<span id="LC1612" class="line" lang="shell"><span class="se" style="color: #d14;">\`</span><span class="sh" style="color: #d14;">configure' configures libmaus2 2.0.65<span class="idiff left right">3</span> to adapt to many kinds of systems.</span></span>
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1612
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<pre style="margin: 0;">+<span id="LC1612" class="line" lang="shell"><span class="se" style="color: #d14;">\`</span><span class="sh" style="color: #d14;">configure' configures libmaus2 2.0.65<span class="idiff left right">7</span> to adapt to many kinds of systems.</span></span>
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1613
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1613
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<pre style="margin: 0;"> <span id="LC1613" class="line" lang="shell"></span>
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1614
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1614
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<pre style="margin: 0;"> <span id="LC1614" class="line" lang="shell"><span class="sh" style="color: #d14;">Usage: </span><span class="nv" style="color: #008080;">$0</span><span class="sh" style="color: #d14;"> [OPTION]... [VAR=VALUE]...</span></span>
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1615
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1615
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<pre style="margin: 0;"> <span id="LC1615" class="line" lang="shell"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1681" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1681" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1681,7 +1681,7 @@ fi</td>
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1681
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1681
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<pre style="margin: 0;"> <span id="LC1681" class="line" lang="shell"></span>
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1682
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1682
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<pre style="margin: 0;"> <span id="LC1682" class="line" lang="shell"><span class="k" style="font-weight: 600;">if </span><span class="nb" style="color: #0086b3;">test</span> <span class="nt" style="color: #000080;">-n</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$ac_init_help</span><span class="s2" style="color: #d14;">"</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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1683
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1683
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<pre style="margin: 0;"> <span id="LC1683" class="line" lang="shell"><span class="k" style="font-weight: 600;"> case</span> <span class="nv" style="color: #008080;">$ac_init_help</span> <span class="k" style="font-weight: 600;">in</span></span>
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1684
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<td class="diff-line-num new_line old" data-linenumber="1684" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1684" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span>short <span class="p">|</span> recursive <span class="p">)</span> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"Configuration of libmaus2 2.0.65<span class="idiff left right">3</span>:"</span><span class="p">;;</span></span>
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1684
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<pre style="margin: 0;">+<span id="LC1684" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span>short <span class="p">|</span> recursive <span class="p">)</span> <span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"Configuration of libmaus2 2.0.65<span class="idiff left right">7</span>:"</span><span class="p">;;</span></span>
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1685
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1685
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<pre style="margin: 0;"> <span id="LC1685" class="line" lang="shell"> <span class="k" style="font-weight: 600;">esac</span></span>
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1686
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1686
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<pre style="margin: 0;"> <span id="LC1686" class="line" lang="shell"> <span class="nb" style="color: #0086b3;">cat</span> <span class="o" style="font-weight: 600;"><<</span><span class="sh" style="color: #d14;">\</span><span class="no" style="color: #008080;">_ACEOF</span></span>
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1687
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1687
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<pre style="margin: 0;"> <span id="LC1687" class="line" lang="shell"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1851,7 +1851,7 @@ fi</td>
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<pre style="margin: 0;"> <span id="LC1851" class="line" lang="shell"><span class="nb" style="color: #0086b3;">test</span> <span class="nt" style="color: #000080;">-n</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$ac_init_help</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">&&</span> <span class="nb" style="color: #0086b3;">exit</span> <span class="nv" style="color: #008080;">$ac_status</span></span>
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1852
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1852
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<pre style="margin: 0;"> <span id="LC1852" class="line" lang="shell"><span class="k" style="font-weight: 600;">if</span> <span class="nv" style="color: #008080;">$ac_init_version</span><span class="p">;</span> <span class="k" style="font-weight: 600;">then</span></span>
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1853
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<pre style="margin: 0;"> <span id="LC1853" class="line" lang="shell"><span class="k" style="font-weight: 600;"> </span><span class="nb" style="color: #0086b3;">cat</span> <span class="o" style="font-weight: 600;"><<</span><span class="sh" style="color: #d14;">\</span><span class="no" style="color: #008080;">_ACEOF</span></span>
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<pre style="margin: 0;">-<span id="LC1854" class="line" lang="shell"><span class="sh" style="color: #d14;">libmaus2 configure 2.0.65<span class="idiff left right">3</span></span></span>
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<pre style="margin: 0;">+<span id="LC1854" class="line" lang="shell"><span class="sh" style="color: #d14;">libmaus2 configure 2.0.65<span class="idiff left right">7</span></span></span>
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1855
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<pre style="margin: 0;"> <span id="LC1855" class="line" lang="shell"><span class="sh" style="color: #d14;">generated by GNU Autoconf 2.69</span></span>
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1856
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<pre style="margin: 0;"> <span id="LC1856" class="line" lang="shell"></span>
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1857
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<pre style="margin: 0;"> <span id="LC1857" class="line" lang="shell"><span class="sh" style="color: #d14;">Copyright (C) 2012 Free Software Foundation, Inc.</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2724,7 +2724,7 @@ cat >config.log <<_ACEOF</td>
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2724
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2724
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<pre style="margin: 0;"> <span id="LC2724" class="line" lang="shell"><span class="sh" style="color: #d14;">This file contains any messages produced by compilers while</span></span>
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2725
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<pre style="margin: 0;"> <span id="LC2725" class="line" lang="shell"><span class="sh" style="color: #d14;">running configure, to aid debugging if configure makes a mistake.</span></span>
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2726
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<pre style="margin: 0;"> <span id="LC2726" class="line" lang="shell"></span>
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<pre style="margin: 0;">-<span id="LC2727" class="line" lang="shell"><span class="sh" style="color: #d14;">It was created by libmaus2 </span><span class="nv" style="color: #008080;">$as_me</span><span class="sh" style="color: #d14;"> 2.0.65<span class="idiff left right">3</span>, which was</span></span>
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2727
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<pre style="margin: 0;">+<span id="LC2727" class="line" lang="shell"><span class="sh" style="color: #d14;">It was created by libmaus2 </span><span class="nv" style="color: #008080;">$as_me</span><span class="sh" style="color: #d14;"> 2.0.65<span class="idiff left right">7</span>, which was</span></span>
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<pre style="margin: 0;"> <span id="LC2728" class="line" lang="shell"><span class="sh" style="color: #d14;">generated by GNU Autoconf 2.69. Invocation command line was</span></span>
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2729
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<pre style="margin: 0;"> <span id="LC2729" class="line" lang="shell"></span>
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2730
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<pre style="margin: 0;"> <span id="LC2730" class="line" lang="shell"><span class="sh" style="color: #d14;"> </span><span class="nv" style="color: #008080;">$ $0</span><span class="sh" style="color: #d14;"> </span><span class="nv" style="color: #008080;">$@</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3072" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3072,7 +3072,7 @@ ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $</td>
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<pre style="margin: 0;"> <span id="LC3072" class="line" lang="shell"><span class="nv" style="color: #008080;">ac_compiler_gnu</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$ac_cv_c_compiler_gnu</span></span>
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3073
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<pre style="margin: 0;"> <span id="LC3073" class="line" lang="shell"></span>
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3074
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<pre style="margin: 0;"> <span id="LC3074" class="line" lang="shell"></span>
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3075
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<pre style="margin: 0;">-<span id="LC3075" class="line" lang="shell"><span class="nv" style="color: #008080;">LIBRARY_VERSION</span><span class="o" style="font-weight: 600;">=</span>2:65<span class="idiff left right">3</span>:0</span>
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3075
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<pre style="margin: 0;">+<span id="LC3075" class="line" lang="shell"><span class="nv" style="color: #008080;">LIBRARY_VERSION</span><span class="o" style="font-weight: 600;">=</span>2:65<span class="idiff left right">7</span>:0</span>
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3076
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<pre style="margin: 0;"> <span id="LC3076" class="line" lang="shell"><span class="o" style="font-weight: 600;">{</span> <span class="nv" style="color: #008080;">$as_echo</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$as_me</span><span class="s2" style="color: #d14;">:</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">as_lineno</span><span class="p">-</span><span class="nv" style="color: #008080;">$LINENO</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">: Configuring for source in directory </span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">srcdir</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">></span>&5</span>
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3077
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<pre style="margin: 0;"> <span id="LC3077" class="line" lang="shell"><span class="nv" style="color: #008080;">$as_echo</span> <span class="s2" style="color: #d14;">"</span><span class="nv" style="color: #008080;">$as_me</span><span class="s2" style="color: #d14;">: Configuring for source in directory </span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">srcdir</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span> <span class="o" style="font-weight: 600;">></span>&6<span class="p">;</span><span class="o" style="font-weight: 600;">}</span></span>
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3078
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3078
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<pre style="margin: 0;"> <span id="LC3078" class="line" lang="shell"><span class="nv" style="color: #008080;">ac_aux_dir</span><span class="o" style="font-weight: 600;">=</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="12628" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12628,7 +12628,7 @@ fi</td>
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12628
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12628
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<pre style="margin: 0;"> <span id="LC12628" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC12629" class="line" lang="shell"><span class="c" style="color: #998; font-style: italic;"># Define the identity of the package.</span></span>
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12630
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<pre style="margin: 0;"> <span id="LC12630" class="line" lang="shell"> <span class="nv" style="color: #008080;">PACKAGE</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'libmaus2'</span></span>
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12631
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<pre style="margin: 0;">-<span id="LC12631" class="line" lang="shell"> <span class="nv" style="color: #008080;">VERSION</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'2.0.65<span class="idiff left right">3</span>'</span></span>
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<pre style="margin: 0;">+<span id="LC12631" class="line" lang="shell"> <span class="nv" style="color: #008080;">VERSION</span><span class="o" style="font-weight: 600;">=</span><span class="s1" style="color: #d14;">'2.0.65<span class="idiff left right">7</span>'</span></span>
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<pre style="margin: 0;"> <span id="LC12632" class="line" lang="shell"></span>
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12633
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<pre style="margin: 0;"> <span id="LC12633" class="line" lang="shell"></span>
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12634
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<pre style="margin: 0;"> <span id="LC12634" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cat</span> <span class="o" style="font-weight: 600;">>></span>confdefs.h <span class="o" style="font-weight: 600;"><<</span><span class="no" style="color: #008080;">_ACEOF</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="28157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="28157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -28157,7 +28157,7 @@ cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1</td>
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28157
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28157
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<pre style="margin: 0;"> <span id="LC28157" class="line" lang="shell"><span class="sh" style="color: #d14;"># report actual input values of CONFIG_FILES etc. instead of their</span></span>
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28158
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28158
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<pre style="margin: 0;"> <span id="LC28158" class="line" lang="shell"><span class="sh" style="color: #d14;"># values after options handling.</span></span>
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28159
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28159
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<pre style="margin: 0;"> <span id="LC28159" class="line" lang="shell"><span class="sh" style="color: #d14;">ac_log="</span></span>
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28160
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<pre style="margin: 0;">-<span id="LC28160" class="line" lang="shell"><span class="sh" style="color: #d14;">This file was extended by libmaus2 </span><span class="nv" style="color: #008080;">$as_me</span><span class="sh" style="color: #d14;"> 2.0.65<span class="idiff left right">3</span>, which was</span></span>
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<pre style="margin: 0;">+<span id="LC28160" class="line" lang="shell"><span class="sh" style="color: #d14;">This file was extended by libmaus2 </span><span class="nv" style="color: #008080;">$as_me</span><span class="sh" style="color: #d14;"> 2.0.65<span class="idiff left right">7</span>, which was</span></span>
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<pre style="margin: 0;"> <span id="LC28161" class="line" lang="shell"><span class="sh" style="color: #d14;">generated by GNU Autoconf 2.69. Invocation command line was</span></span>
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28162
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<pre style="margin: 0;"> <span id="LC28162" class="line" lang="shell"></span>
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<pre style="margin: 0;"> <span id="LC28163" class="line" lang="shell"><span class="sh" style="color: #d14;"> CONFIG_FILES = </span><span class="nv" style="color: #008080;">$CONFIG_FILES</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="28224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -28224,7 +28224,7 @@ _ACEOF</td>
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28224
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<pre style="margin: 0;"> <span id="LC28224" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cat</span> <span class="o" style="font-weight: 600;">>></span><span class="nv" style="color: #008080;">$CONFIG_STATUS</span> <span class="o" style="font-weight: 600;"><<</span><span class="no" style="color: #008080;">_ACEOF</span><span class="sh" style="color: #d14;"> || ac_write_fail=1</span></span>
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<pre style="margin: 0;"> <span id="LC28225" class="line" lang="shell"><span class="sh" style="color: #d14;">ac_cs_config="`</span><span class="nv" style="color: #008080;">$as_echo</span><span class="sh" style="color: #d14;"> "</span><span class="nv" style="color: #008080;">$ac_configure_args</span><span class="sh" style="color: #d14;">" | sed 's/^ //; s/[</span><span class="se" style="color: #d14;">\\</span><span class="sh" style="color: #d14;">""</span><span class="se" style="color: #d14;">\`\$</span><span class="sh" style="color: #d14;">]/</span><span class="se" style="color: #d14;">\\\\</span><span class="sh" style="color: #d14;">&/g'`"</span></span>
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<pre style="margin: 0;"> <span id="LC28226" class="line" lang="shell"><span class="sh" style="color: #d14;">ac_cs_version="</span><span class="se" style="color: #d14;">\\</span></span>
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<pre style="margin: 0;">-<span id="LC28227" class="line" lang="shell"><span class="sh" style="color: #d14;">libmaus2 config.status 2.0.65<span class="idiff left right">3</span></span></span>
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<pre style="margin: 0;">+<span id="LC28227" class="line" lang="shell"><span class="sh" style="color: #d14;">libmaus2 config.status 2.0.65<span class="idiff left right">7</span></span></span>
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<pre style="margin: 0;"> <span id="LC28228" class="line" lang="shell"><span class="sh" style="color: #d14;">configured by </span><span class="nv" style="color: #008080;">$0</span><span class="sh" style="color: #d14;">, generated by GNU Autoconf 2.69,</span></span>
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<pre style="margin: 0;"> <span id="LC28229" class="line" lang="shell"><span class="sh" style="color: #d14;"> with options </span><span class="se" style="color: #d14;">\\</span><span class="sh" style="color: #d14;">"</span><span class="se" style="color: #d14;">\$</span><span class="sh" style="color: #d14;">ac_cs_config</span><span class="se" style="color: #d14;">\\</span><span class="sh" style="color: #d14;">"</span></span>
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<pre style="margin: 0;"> <span id="LC28230" class="line" lang="shell"></span>
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<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#87db583be5c13c1f7b3c958b10e03d67b6a2ca06"><strong>configure.ac</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">AC_INIT(libmaus2,2.0.65<span class="idiff left right">3</span>,[tischler@mpi-cbg.de],[libmaus2],[https://github.com/gt1/libmaus2])</span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext">LIBRARY_VERSION=2:65<span class="idiff left right">3</span>:0</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">AC_INIT(libmaus2,2.0.65<span class="idiff left right">7</span>,[tischler@mpi-cbg.de],[libmaus2],[https://github.com/gt1/libmaus2])</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext">LIBRARY_VERSION=2:65<span class="idiff left right">7</span>:0</span>
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">AC_MSG_NOTICE([Configuring for source in directory ${srcdir}])</span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">AC_CANONICAL_SYSTEM</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">AC_CANONICAL_HOST</span>
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<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#67e794015a01b8816bd16290e5f8538236da8245"><strong>src/Makefile.am</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1773,7 +1773,9 @@ libmaus2rmq_include_HEADERS=\</td>
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<pre style="margin: 0;"> <span id="LC1773" class="line" lang="make"></span>
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1774
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<pre style="margin: 0;"> <span id="LC1774" class="line" lang="make"><span class="nv" style="color: #008080;">libmaus2network_includedir</span><span class="o" style="font-weight: 600;">=</span><span class="nv" style="color: #008080;">$(includedir)</span>/libmaus2/network</span>
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1775
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<pre style="margin: 0;"> <span id="LC1775" class="line" lang="make"><span class="nv" style="color: #008080;">libmaus2network_include_HEADERS</span><span class="o" style="font-weight: 600;">=</span><span class="se" style="color: #d14;">\</span></span>
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1776
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<pre style="margin: 0;">-<span id="LC1776" class="line" lang="make"> libmaus2/network/Socket.hpp <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC1776" class="line" lang="make"> libmaus2/network/SocketBase.hpp <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC1777" class="line" lang="make"> libmaus2/network/ClientSocket.hpp <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC1778" class="line" lang="make"> libmaus2/network/ServerSocket.hpp <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;"> <span id="LC1779" class="line" lang="make"> libmaus2/network/GetHostName.hpp <span class="se" style="color: #d14;">\</span></span>
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1778
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1780
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<pre style="margin: 0;"> <span id="LC1780" class="line" lang="make"> libmaus2/network/SocketInputStreamBuffer.hpp <span class="se" style="color: #d14;">\</span></span>
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1779
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1781
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<pre style="margin: 0;"> <span id="LC1781" class="line" lang="make"> libmaus2/network/SocketInputStream.hpp <span class="se" style="color: #d14;">\</span></span>
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<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#49df23e069b78a534b14d2841918824dddc91a6b"><strong>src/Makefile.in</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4173,7 +4173,9 @@ libmaus2rmq_include_HEADERS = \</td>
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4173
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4173
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<pre style="margin: 0;"> <span id="LC4173" class="line" lang=""></span>
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4174
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4174
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<pre style="margin: 0;"> <span id="LC4174" class="line" lang="">libmaus2network_includedir = $(includedir)/libmaus2/network</span>
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4175
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4175
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<pre style="margin: 0;"> <span id="LC4175" class="line" lang="">libmaus2network_include_HEADERS = \</span>
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4176
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<pre style="margin: 0;">-<span id="LC4176" class="line" lang=""> libmaus2/network/Socket.hpp \</span>
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4176
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<pre style="margin: 0;">+<span id="LC4176" class="line" lang=""> libmaus2/network/SocketBase.hpp \</span>
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4177
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<pre style="margin: 0;">+<span id="LC4177" class="line" lang=""> libmaus2/network/ClientSocket.hpp \</span>
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4178
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<pre style="margin: 0;">+<span id="LC4178" class="line" lang=""> libmaus2/network/ServerSocket.hpp \</span>
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4177
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4179
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<pre style="margin: 0;"> <span id="LC4179" class="line" lang=""> libmaus2/network/GetHostName.hpp \</span>
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4178
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4180
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<pre style="margin: 0;"> <span id="LC4180" class="line" lang=""> libmaus2/network/SocketInputStreamBuffer.hpp \</span>
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4179
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4181
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<pre style="margin: 0;"> <span id="LC4181" class="line" lang=""> libmaus2/network/SocketInputStream.hpp \</span>
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<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#7cc9364b6b07eae58b95a5fd9a88fb73161c8263"><strong>src/libmaus2/aio/TempFileArray.hpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,6 +22,7 @@</td>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/autoarray/AutoArray.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/util/TempFileRemovalContainer.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/sorting/SortingBufferedOutputFile.hpp></span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/util/Concat.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="cpp"><span class="k" style="font-weight: 600;">namespace</span> <span class="n" style="color: #333;">libmaus2</span></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="cpp"><span class="p">{</span></span>
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<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#bd763f31b698f4e8a9c0b5fb6205c8f754241645"><strong>src/libmaus2/autoarray/AutoArray.hpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -196,6 +196,122 @@ namespace libmaus2</td>
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196
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">extern</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">volatile</span> <span class="n" style="color: #333;">AutoArray_maxmem</span><span class="p">;</span></span>
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197
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">extern</span> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StdSpinLock</span> <span class="n" style="color: #333;">AutoArray_lock</span><span class="p">;</span></span>
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198
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198
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="cpp"></span>
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199
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">template</span><span class="o" style="font-weight: 600;"><</span><span class="k" style="font-weight: 600;">typename</span> <span class="n" style="color: #333;">N</span><span class="p">,</span> <span class="n" style="color: #333;">alloc_type</span> <span class="n" style="color: #333;">atype</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">alloc_type_cxx</span><span class="o" style="font-weight: 600;">></span></span>
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200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">AutoArrayBase</span></span>
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201
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="cpp"> <span class="p">{</span></span>
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202
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">N</span> <span class="n" style="color: #333;">value_type</span><span class="p">;</span></span>
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203
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="cpp"></span>
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204
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/**</span></span>
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205
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<pre style="margin: 0;">+<span id="LC205" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * return name of value type</span></span>
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206
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * @return name of value type</span></span>
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207
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> **/</span></span>
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208
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="n" style="color: #333;">getValueTypeName</span><span class="p">()</span></span>
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209
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="cpp"> <span class="p">{</span></span>
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210
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">Demangle</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">demangle</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">value_type</span><span class="o" style="font-weight: 600;">></span><span class="p">();</span></span>
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211
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="cpp"></span>
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213
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/**</span></span>
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * return name of allocation type</span></span>
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215
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<pre style="margin: 0;">+<span id="LC215" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * @return name of allocation type</span></span>
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216
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<pre style="margin: 0;">+<span id="LC216" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> **/</span></span>
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217
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="n" style="color: #333;">getAllocTypeName</span><span class="p">()</span></span>
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218
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="cpp"> <span class="p">{</span></span>
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219
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">switch</span> <span class="p">(</span> <span class="n" style="color: #333;">atype</span> <span class="p">)</span></span>
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220
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="221" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
221
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_cxx</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="222" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
222
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="s" style="color: #d14;">"alloc_type_cxx"</span><span class="p">;</span></span>
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<td class="diff-line-num new old_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
223
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_c</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
224
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="s" style="color: #d14;">"alloc_type_c"</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="225" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
225
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_memalign_cacheline</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="226" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
226
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="s" style="color: #d14;">"alloc_type_memalign_cacheline"</span><span class="p">;</span></span>
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<td class="diff-line-num new old_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="227" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
227
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_memalign_pagesize</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="228" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
228
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="s" style="color: #d14;">"alloc_type_memalign_pagesize"</span><span class="p">;</span></span>
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<td class="diff-line-num new old_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="229" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
229
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_hugepages</span><span class="p">:</span></span>
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<td class="diff-line-num new old_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="230" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
230
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="s" style="color: #d14;">"alloc_type_hugepages"</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="231" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
231
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_hugepages_memalign_cacheline</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="232" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
232
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<pre style="margin: 0;">+<span id="LC232" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="s" style="color: #d14;">"alloc_type_memalign_cacheline"</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="233" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
233
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<pre style="margin: 0;">+<span id="LC233" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_hugepages_memalign_pagesize</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
234
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<pre style="margin: 0;">+<span id="LC234" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="s" style="color: #d14;">"alloc_type_memalign_pagesize"</span><span class="p">;</span></span>
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<td class="diff-line-num new old_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="235" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
235
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<pre style="margin: 0;">+<span id="LC235" class="line" lang="cpp"> <span class="nl">default:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
236
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="s" style="color: #d14;">"alloc_type_unknown"</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
237
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
238
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<pre style="margin: 0;">+<span id="LC238" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="diff-line-num new old_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
239
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/**</span></span>
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<td class="diff-line-num new new_line" data-linenumber="240" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
240
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * return full type name of array class</span></span>
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<td class="diff-line-num new new_line" data-linenumber="241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
241
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * @return full type name of array class</span></span>
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<td class="diff-line-num new old_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="242" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
242
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> **/</span></span>
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<td class="diff-line-num new old_line" data-linenumber="199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="243" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
243
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<pre style="margin: 0;">+<span id="LC243" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="n" style="color: #333;">getTypeName</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC244" class="line" lang="cpp"> <span class="p">{</span></span>
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245
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<pre style="margin: 0;">+<span id="LC245" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span><span class="p">(</span><span class="s" style="color: #d14;">"AutoArray<"</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">getValueTypeName</span><span class="p">()</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">","</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">getAllocTypeName</span><span class="p">()</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">">"</span><span class="p">;</span></span>
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246
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<pre style="margin: 0;">+<span id="LC246" class="line" lang="cpp"> <span class="p">}</span></span>
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247
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<pre style="margin: 0;">+<span id="LC247" class="line" lang="cpp"></span>
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248
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<pre style="margin: 0;">+<span id="LC248" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/**</span></span>
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249
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<pre style="margin: 0;">+<span id="LC249" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * @return size of a (level 1) cache line in bytes</span></span>
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250
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<pre style="margin: 0;">+<span id="LC250" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> **/</span></span>
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251
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<pre style="margin: 0;">+<span id="LC251" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#if defined(LIBMAUS2_HAVE_SYSCONF) && defined(_SC_LEVEL1_DCACHE_LINESIZE)</span></span>
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252
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<pre style="margin: 0;">+<span id="LC252" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">getCacheLineSize</span><span class="p">()</span></span>
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253
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<pre style="margin: 0;">+<span id="LC253" class="line" lang="cpp"> <span class="p">{</span></span>
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254
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<pre style="margin: 0;">+<span id="LC254" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">sclinesize</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">posix</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">PosixFunctions</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">sysconf</span><span class="p">(</span><span class="n" style="color: #333;">_SC_LEVEL1_DCACHE_LINESIZE</span><span class="p">);</span></span>
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255
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<pre style="margin: 0;">+<span id="LC255" class="line" lang="cpp"></span>
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256
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<pre style="margin: 0;">+<span id="LC256" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">sclinesize</span> <span class="p">)</span></span>
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257
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<pre style="margin: 0;">+<span id="LC257" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">sclinesize</span><span class="p">;</span></span>
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258
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<pre style="margin: 0;">+<span id="LC258" class="line" lang="cpp"></span>
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259
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<pre style="margin: 0;">+<span id="LC259" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#if defined(LIBMAUS2_USE_ASSEMBLY) && defined(LIBMAUS2_HAVE_i386)</span></span>
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260
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<pre style="margin: 0;">+<span id="LC260" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">I386CacheLineSize</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">getCacheLineSize</span><span class="p">();</span></span>
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261
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<pre style="margin: 0;">+<span id="LC261" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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262
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<pre style="margin: 0;">+<span id="LC262" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="mi" style="color: #099;">64ull</span><span class="p">;</span></span>
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263
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<pre style="margin: 0;">+<span id="LC263" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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264
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<pre style="margin: 0;">+<span id="LC264" class="line" lang="cpp"> <span class="p">}</span></span>
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265
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<pre style="margin: 0;">+<span id="LC265" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#elif defined(_WIN32)</span></span>
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266
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<pre style="margin: 0;">+<span id="LC266" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">getCacheLineSize</span><span class="p">()</span></span>
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267
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<pre style="margin: 0;">+<span id="LC267" class="line" lang="cpp"> <span class="p">{</span></span>
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268
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<pre style="margin: 0;">+<span id="LC268" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">cachelinesize</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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269
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<pre style="margin: 0;">+<span id="LC269" class="line" lang="cpp"> <span class="n" style="color: #333;">DWORD</span> <span class="n" style="color: #333;">bufsize</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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270
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<pre style="margin: 0;">+<span id="LC270" class="line" lang="cpp"> <span class="n" style="color: #333;">GetLogicalProcessorInformation</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">bufsize</span><span class="p">);</span></span>
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<td class="diff-line-num new new_line" data-linenumber="271" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
271
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<pre style="margin: 0;">+<span id="LC271" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">uint8_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">Abuffer</span><span class="p">(</span><span class="n" style="color: #333;">bufsize</span><span class="p">);</span></span>
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272
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<pre style="margin: 0;">+<span id="LC272" class="line" lang="cpp"> <span class="n" style="color: #333;">SYSTEM_LOGICAL_PROCESSOR_INFORMATION</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">buffer</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">SYSTEM_LOGICAL_PROCESSOR_INFORMATION</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="n" style="color: #333;">Abuffer</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">());</span></span>
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273
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<pre style="margin: 0;">+<span id="LC273" class="line" lang="cpp"> <span class="n" style="color: #333;">GetLogicalProcessorInformation</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">buffer</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">],</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">bufsize</span><span class="p">);</span></span>
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274
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<pre style="margin: 0;">+<span id="LC274" class="line" lang="cpp"></span>
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275
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<pre style="margin: 0;">+<span id="LC275" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">bufsize</span> <span class="o" style="font-weight: 600;">/</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">SYSTEM_LOGICAL_PROCESSOR_INFORMATION</span><span class="p">);</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">i</span><span class="p">)</span></span>
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276
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<pre style="margin: 0;">+<span id="LC276" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="277" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
277
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<pre style="margin: 0;">+<span id="LC277" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">buffer</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">Relationship</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">RelationCache</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">buffer</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">Cache</span><span class="p">.</span><span class="n" style="color: #333;">Level</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="278" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
278
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<pre style="margin: 0;">+<span id="LC278" class="line" lang="cpp"> <span class="n" style="color: #333;">cachelinesize</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">buffer</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">Cache</span><span class="p">.</span><span class="n" style="color: #333;">LineSize</span><span class="p">;</span></span>
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279
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<pre style="margin: 0;">+<span id="LC279" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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280
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<pre style="margin: 0;">+<span id="LC280" class="line" lang="cpp"> <span class="p">}</span></span>
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281
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<pre style="margin: 0;">+<span id="LC281" class="line" lang="cpp"> <span class="p">}</span></span>
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282
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<pre style="margin: 0;">+<span id="LC282" class="line" lang="cpp"></span>
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283
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<pre style="margin: 0;">+<span id="LC283" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">cachelinesize</span><span class="p">;</span></span>
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284
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<pre style="margin: 0;">+<span id="LC284" class="line" lang="cpp"> <span class="p">}</span></span>
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285
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<pre style="margin: 0;">+<span id="LC285" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#elif defined(__APPLE__)</span></span>
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286
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<pre style="margin: 0;">+<span id="LC286" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">getCacheLineSize</span><span class="p">()</span></span>
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287
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<pre style="margin: 0;">+<span id="LC287" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="288" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
288
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<pre style="margin: 0;">+<span id="LC288" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">cachelinesize</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
289
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<pre style="margin: 0;">+<span id="LC289" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">cachelinesizelen</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">cachelinesize</span><span class="p">);</span></span>
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290
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<pre style="margin: 0;">+<span id="LC290" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#if defined(NDEBUG)</span></span>
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291
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<pre style="margin: 0;">+<span id="LC291" class="line" lang="cpp"> <span class="n" style="color: #333;">sysctlbyname</span><span class="p">(</span><span class="s" style="color: #d14;">"hw.cachelinesize"</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">cachelinesize</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">cachelinesizelen</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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292
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<pre style="margin: 0;">+<span id="LC292" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<td class="diff-line-num new new_line" data-linenumber="293" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
293
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<pre style="margin: 0;">+<span id="LC293" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">sysctlretname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sysctlbyname</span><span class="p">(</span><span class="s" style="color: #d14;">"hw.cachelinesize"</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">cachelinesize</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">cachelinesizelen</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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294
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<pre style="margin: 0;">+<span id="LC294" class="line" lang="cpp"> <span class="n" style="color: #333;">assert</span> <span class="p">(</span> <span class="o" style="font-weight: 600;">!</span> <span class="n" style="color: #333;">sysctlretname</span> <span class="p">);</span></span>
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295
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<pre style="margin: 0;">+<span id="LC295" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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296
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<pre style="margin: 0;">+<span id="LC296" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">cachelinesize</span><span class="p">;</span></span>
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297
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<pre style="margin: 0;">+<span id="LC297" class="line" lang="cpp"> <span class="p">}</span></span>
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298
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<pre style="margin: 0;">+<span id="LC298" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#elif defined(LIBMAUS2_USE_ASSEMBLY) && defined(LIBMAUS2_HAVE_i386)</span></span>
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299
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<pre style="margin: 0;">+<span id="LC299" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">getCacheLineSize</span><span class="p">()</span></span>
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300
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<pre style="margin: 0;">+<span id="LC300" class="line" lang="cpp"> <span class="p">{</span></span>
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301
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<pre style="margin: 0;">+<span id="LC301" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">I386CacheLineSize</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">getCacheLineSize</span><span class="p">();</span></span>
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302
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<pre style="margin: 0;">+<span id="LC302" class="line" lang="cpp"> <span class="p">}</span></span>
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303
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<pre style="margin: 0;">+<span id="LC303" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<td class="diff-line-num new new_line" data-linenumber="304" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
304
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<pre style="margin: 0;">+<span id="LC304" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">getCacheLineSize</span><span class="p">()</span></span>
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305
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<pre style="margin: 0;">+<span id="LC305" class="line" lang="cpp"> <span class="p">{</span></span>
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306
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<pre style="margin: 0;">+<span id="LC306" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="307" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
307
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<pre style="margin: 0;">+<span id="LC307" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"AutoArray<>::getCacheLineSize(): cache line size detection not available."</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC308" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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309
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<pre style="margin: 0;">+<span id="LC309" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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310
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<pre style="margin: 0;">+<span id="LC310" class="line" lang="cpp"> <span class="p">}</span></span>
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311
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<pre style="margin: 0;">+<span id="LC311" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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312
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<pre style="margin: 0;">+<span id="LC312" class="line" lang="cpp"> <span class="p">};</span></span>
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313
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<pre style="margin: 0;">+<span id="LC313" class="line" lang="cpp"></span>
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314
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<pre style="margin: 0;">+<span id="LC314" class="line" lang="cpp"></span>
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315
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<pre style="margin: 0;"> <span id="LC315" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#if defined(LIBMAUS2_AUTOARRAY_AUTOARRAYTRACE)</span></span>
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316
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<pre style="margin: 0;"> <span id="LC316" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">template</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">n</span><span class="o" style="font-weight: 600;">></span></span>
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201
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<pre style="margin: 0;"> <span id="LC317" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">AutoArrayBackTrace</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="410" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -294,6 +410,297 @@ namespace libmaus2</td>
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<pre style="margin: 0;"> <span id="LC410" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">erase</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="o" style="font-weight: 600;">></span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">array</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC411" class="line" lang="cpp"> <span class="p">};</span></span>
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<pre style="margin: 0;"> <span id="LC412" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC413" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">template</span><span class="o" style="font-weight: 600;"><</span><span class="k" style="font-weight: 600;">typename</span> <span class="n" style="color: #333;">N</span><span class="p">,</span> <span class="n" style="color: #333;">alloc_type</span> <span class="n" style="color: #333;">atype</span><span class="o" style="font-weight: 600;">></span></span>
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<pre style="margin: 0;">+<span id="LC414" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">AutoArrayAllocate</span></span>
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<pre style="margin: 0;">+<span id="LC415" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC416" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">allocate</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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417
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<pre style="margin: 0;">+<span id="LC417" class="line" lang="cpp"> <span class="p">};</span></span>
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418
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<pre style="margin: 0;">+<span id="LC418" class="line" lang="cpp"></span>
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419
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<pre style="margin: 0;">+<span id="LC419" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">template</span><span class="o" style="font-weight: 600;"><</span><span class="k" style="font-weight: 600;">typename</span> <span class="n" style="color: #333;">N</span><span class="o" style="font-weight: 600;">></span></span>
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420
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<pre style="margin: 0;">+<span id="LC420" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">AutoArrayAllocate</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">alloc_type_cxx</span><span class="o" style="font-weight: 600;">></span></span>
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421
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<pre style="margin: 0;">+<span id="LC421" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC422" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">allocate</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">n</span><span class="p">)</span></span>
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423
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<pre style="margin: 0;">+<span id="LC423" class="line" lang="cpp"> <span class="p">{</span></span>
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424
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<pre style="margin: 0;">+<span id="LC424" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">try</span></span>
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425
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<pre style="margin: 0;">+<span id="LC425" class="line" lang="cpp"> <span class="p">{</span></span>
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426
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<pre style="margin: 0;">+<span id="LC426" class="line" lang="cpp"> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">p</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">N</span><span class="p">[</span><span class="n" style="color: #333;">n</span><span class="p">];</span></span>
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427
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<pre style="margin: 0;">+<span id="LC427" class="line" lang="cpp"></span>
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428
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<pre style="margin: 0;">+<span id="LC428" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">p</span><span class="p">;</span></span>
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429
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<pre style="margin: 0;">+<span id="LC429" class="line" lang="cpp"> <span class="p">}</span></span>
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430
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<pre style="margin: 0;">+<span id="LC430" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">catch</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">ex</span><span class="p">)</span></span>
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431
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<pre style="margin: 0;">+<span id="LC431" class="line" lang="cpp"> <span class="p">{</span></span>
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432
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<pre style="margin: 0;">+<span id="LC432" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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433
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<pre style="margin: 0;">+<span id="LC433" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span></span>
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434
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<pre style="margin: 0;">+<span id="LC434" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">AutoArrayBase</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">alloc_type_cxx</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">getTypeName</span><span class="p">()</span></span>
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435
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<pre style="margin: 0;">+<span id="LC435" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" failed to allocate "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" elements ("</span></span>
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436
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<pre style="margin: 0;">+<span id="LC436" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">n</span><span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" bytes)"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span></span>
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437
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<pre style="margin: 0;">+<span id="LC437" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"current total allocation "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">AutoArray_memusage</span></span>
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438
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<pre style="margin: 0;">+<span id="LC438" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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439
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<pre style="margin: 0;">+<span id="LC439" class="line" lang="cpp"> <span class="p">;</span></span>
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440
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<pre style="margin: 0;">+<span id="LC440" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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441
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<pre style="margin: 0;">+<span id="LC441" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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442
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<pre style="margin: 0;">+<span id="LC442" class="line" lang="cpp"> <span class="p">}</span></span>
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443
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<pre style="margin: 0;">+<span id="LC443" class="line" lang="cpp"> <span class="p">}</span></span>
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444
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<pre style="margin: 0;">+<span id="LC444" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC445" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">deallocate</span><span class="p">(</span><span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">array</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC446" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC447" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">delete</span> <span class="p">[]</span> <span class="n" style="color: #333;">array</span><span class="p">;</span></span>
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448
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<pre style="margin: 0;">+<span id="LC448" class="line" lang="cpp"> <span class="p">}</span></span>
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449
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<pre style="margin: 0;">+<span id="LC449" class="line" lang="cpp"> <span class="p">};</span></span>
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450
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<pre style="margin: 0;">+<span id="LC450" class="line" lang="cpp"></span>
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451
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<pre style="margin: 0;">+<span id="LC451" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">template</span><span class="o" style="font-weight: 600;"><</span><span class="k" style="font-weight: 600;">typename</span> <span class="n" style="color: #333;">N</span><span class="o" style="font-weight: 600;">></span></span>
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452
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<pre style="margin: 0;">+<span id="LC452" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">AutoArrayAllocate</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">alloc_type_c</span><span class="o" style="font-weight: 600;">></span></span>
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453
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<pre style="margin: 0;">+<span id="LC453" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC454" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">allocate</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">n</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC455" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC456" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">try</span></span>
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<pre style="margin: 0;">+<span id="LC457" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC458" class="line" lang="cpp"> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">p</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="n" style="color: #333;">N</span><span class="o" style="font-weight: 600;">*</span><span class="p">)</span><span class="n" style="color: #333;">malloc</span><span class="p">(</span><span class="n" style="color: #333;">n</span><span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">));</span></span>
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459
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<pre style="margin: 0;">+<span id="LC459" class="line" lang="cpp"></span>
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460
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<pre style="margin: 0;">+<span id="LC460" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="o" style="font-weight: 600;">!</span> <span class="n" style="color: #333;">p</span> <span class="p">)</span></span>
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461
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<pre style="margin: 0;">+<span id="LC461" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span><span class="p">();</span></span>
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462
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<pre style="margin: 0;">+<span id="LC462" class="line" lang="cpp"></span>
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463
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<pre style="margin: 0;">+<span id="LC463" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">p</span><span class="p">;</span></span>
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464
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<pre style="margin: 0;">+<span id="LC464" class="line" lang="cpp"> <span class="p">}</span></span>
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465
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<pre style="margin: 0;">+<span id="LC465" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">catch</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">ex</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC466" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC467" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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468
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<pre style="margin: 0;">+<span id="LC468" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span></span>
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469
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<pre style="margin: 0;">+<span id="LC469" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">AutoArrayBase</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">alloc_type_c</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">getTypeName</span><span class="p">()</span></span>
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470
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<pre style="margin: 0;">+<span id="LC470" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" failed to allocate "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" elements ("</span></span>
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<pre style="margin: 0;">+<span id="LC471" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">n</span><span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" bytes)"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span></span>
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472
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<pre style="margin: 0;">+<span id="LC472" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"current total allocation "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">AutoArray_memusage</span></span>
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473
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<pre style="margin: 0;">+<span id="LC473" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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474
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<pre style="margin: 0;">+<span id="LC474" class="line" lang="cpp"> <span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC475" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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476
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<pre style="margin: 0;">+<span id="LC476" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC477" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC478" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC480" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">deallocate</span><span class="p">(</span><span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">array</span><span class="p">)</span></span>
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481
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<pre style="margin: 0;">+<span id="LC481" class="line" lang="cpp"> <span class="p">{</span></span>
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482
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<pre style="margin: 0;">+<span id="LC482" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">array</span><span class="p">);</span></span>
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483
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<pre style="margin: 0;">+<span id="LC483" class="line" lang="cpp"> <span class="p">}</span></span>
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484
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<pre style="margin: 0;">+<span id="LC484" class="line" lang="cpp"> <span class="p">};</span></span>
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485
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486
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<pre style="margin: 0;">+<span id="LC486" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">template</span><span class="o" style="font-weight: 600;"><</span><span class="k" style="font-weight: 600;">typename</span> <span class="n" style="color: #333;">N</span><span class="o" style="font-weight: 600;">></span></span>
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487
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<pre style="margin: 0;">+<span id="LC487" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">AutoArrayAllocate</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">alloc_type_memalign_cacheline</span><span class="o" style="font-weight: 600;">></span></span>
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488
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<pre style="margin: 0;">+<span id="LC488" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC489" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">allocate</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">n</span><span class="p">)</span></span>
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490
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<pre style="margin: 0;">+<span id="LC490" class="line" lang="cpp"> <span class="p">{</span></span>
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491
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<pre style="margin: 0;">+<span id="LC491" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">try</span></span>
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492
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<pre style="margin: 0;">+<span id="LC492" class="line" lang="cpp"> <span class="p">{</span></span>
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493
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<pre style="margin: 0;">+<span id="LC493" class="line" lang="cpp"> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">array</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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494
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<pre style="margin: 0;">+<span id="LC494" class="line" lang="cpp"></span>
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495
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<pre style="margin: 0;">+<span id="LC495" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">cachelinesize</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">AutoArrayBase</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">alloc_type_memalign_cacheline</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">getCacheLineSize</span><span class="p">();</span></span>
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496
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<pre style="margin: 0;">+<span id="LC496" class="line" lang="cpp"></span>
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497
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<pre style="margin: 0;">+<span id="LC497" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#if defined(_WIN32)</span></span>
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498
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<pre style="margin: 0;">+<span id="LC498" class="line" lang="cpp"> <span class="n" style="color: #333;">array</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="n" style="color: #333;">_aligned_malloc</span><span class="p">(</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">),</span> <span class="n" style="color: #333;">cachelinesize</span> <span class="p">));</span></span>
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499
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<pre style="margin: 0;">+<span id="LC499" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="o" style="font-weight: 600;">!</span> <span class="n" style="color: #333;">array</span> <span class="p">)</span></span>
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500
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<pre style="margin: 0;">+<span id="LC500" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span><span class="p">();</span></span>
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501
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<pre style="margin: 0;">+<span id="LC501" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#elif defined(LIBMAUS2_HAVE_POSIX_MEMALIGN)</span></span>
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502
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<pre style="margin: 0;">+<span id="LC502" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">posix_memalign</span><span class="p">(</span><span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">void</span><span class="o" style="font-weight: 600;">**></span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">array</span><span class="p">),</span><span class="n" style="color: #333;">cachelinesize</span><span class="p">,</span><span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">)</span> <span class="p">);</span></span>
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503
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<pre style="margin: 0;">+<span id="LC503" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">r</span> <span class="p">)</span></span>
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504
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<pre style="margin: 0;">+<span id="LC504" class="line" lang="cpp"> <span class="p">{</span></span>
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505
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<pre style="margin: 0;">+<span id="LC505" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">aerrno</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">r</span><span class="p">;</span></span>
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506
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<pre style="margin: 0;">+<span id="LC506" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"allocation failure: "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">strerror</span><span class="p">(</span><span class="n" style="color: #333;">aerrno</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" cachelinesize="</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">cachelinesize</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" requested size is "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">n</span><span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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507
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<pre style="margin: 0;">+<span id="LC507" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span><span class="p">();</span></span>
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508
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<pre style="margin: 0;">+<span id="LC508" class="line" lang="cpp"> <span class="p">}</span></span>
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509
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<pre style="margin: 0;">+<span id="LC509" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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510
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<pre style="margin: 0;">+<span id="LC510" class="line" lang="cpp"> <span class="n" style="color: #333;">array</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">AlignedAllocation</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">atype</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">alignedAllocate</span><span class="p">(</span><span class="n" style="color: #333;">n</span><span class="p">,</span><span class="n" style="color: #333;">cachelinesize</span><span class="p">);</span></span>
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511
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<pre style="margin: 0;">+<span id="LC511" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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512
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<pre style="margin: 0;">+<span id="LC512" class="line" lang="cpp"></span>
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513
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<pre style="margin: 0;">+<span id="LC513" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">array</span><span class="p">;</span></span>
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514
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<pre style="margin: 0;">+<span id="LC514" class="line" lang="cpp"></span>
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515
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<pre style="margin: 0;">+<span id="LC515" class="line" lang="cpp"> <span class="p">}</span></span>
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516
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<pre style="margin: 0;">+<span id="LC516" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">catch</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">ex</span><span class="p">)</span></span>
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517
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<pre style="margin: 0;">+<span id="LC517" class="line" lang="cpp"> <span class="p">{</span></span>
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518
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<pre style="margin: 0;">+<span id="LC518" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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519
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<pre style="margin: 0;">+<span id="LC519" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span></span>
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520
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<pre style="margin: 0;">+<span id="LC520" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">AutoArrayBase</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">alloc_type_memalign_cacheline</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">getTypeName</span><span class="p">()</span></span>
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521
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<pre style="margin: 0;">+<span id="LC521" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" failed to allocate "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" elements ("</span></span>
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522
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<pre style="margin: 0;">+<span id="LC522" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">n</span><span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" bytes)"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span></span>
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523
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<pre style="margin: 0;">+<span id="LC523" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"current total allocation "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">AutoArray_memusage</span></span>
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524
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<pre style="margin: 0;">+<span id="LC524" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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525
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<pre style="margin: 0;">+<span id="LC525" class="line" lang="cpp"> <span class="p">;</span></span>
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526
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<pre style="margin: 0;">+<span id="LC526" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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527
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<pre style="margin: 0;">+<span id="LC527" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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528
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<pre style="margin: 0;">+<span id="LC528" class="line" lang="cpp"> <span class="p">}</span></span>
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529
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<pre style="margin: 0;">+<span id="LC529" class="line" lang="cpp"> <span class="p">}</span></span>
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530
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<pre style="margin: 0;">+<span id="LC530" class="line" lang="cpp"></span>
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531
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<pre style="margin: 0;">+<span id="LC531" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">deallocate</span><span class="p">(</span><span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">array</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC532" class="line" lang="cpp"> <span class="p">{</span></span>
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533
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<pre style="margin: 0;">+<span id="LC533" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#if defined(_WIN32) || defined(LIBMAUS2_HAVE_POSIX_MEMALIGN)</span></span>
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534
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<pre style="margin: 0;">+<span id="LC534" class="line" lang="cpp"> <span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">array</span><span class="p">);</span></span>
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535
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<pre style="margin: 0;">+<span id="LC535" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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536
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<pre style="margin: 0;">+<span id="LC536" class="line" lang="cpp"> <span class="n" style="color: #333;">AlignedAllocation</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">alloc_type_memalign_cacheline</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">freeAligned</span><span class="p">(</span><span class="n" style="color: #333;">array</span><span class="p">);</span></span>
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537
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<pre style="margin: 0;">+<span id="LC537" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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538
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<pre style="margin: 0;">+<span id="LC538" class="line" lang="cpp"> <span class="p">}</span></span>
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539
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<pre style="margin: 0;">+<span id="LC539" class="line" lang="cpp"> <span class="p">};</span></span>
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540
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<pre style="margin: 0;">+<span id="LC540" class="line" lang="cpp"></span>
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541
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<pre style="margin: 0;">+<span id="LC541" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">template</span><span class="o" style="font-weight: 600;"><</span><span class="k" style="font-weight: 600;">typename</span> <span class="n" style="color: #333;">N</span><span class="o" style="font-weight: 600;">></span></span>
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542
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<pre style="margin: 0;">+<span id="LC542" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">AutoArrayAllocate</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">alloc_type_memalign_pagesize</span><span class="o" style="font-weight: 600;">></span></span>
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543
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<pre style="margin: 0;">+<span id="LC543" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC544" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">allocate</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">n</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC545" class="line" lang="cpp"> <span class="p">{</span></span>
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546
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<pre style="margin: 0;">+<span id="LC546" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">try</span></span>
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547
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<pre style="margin: 0;">+<span id="LC547" class="line" lang="cpp"> <span class="p">{</span></span>
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548
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<pre style="margin: 0;">+<span id="LC548" class="line" lang="cpp"> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">array</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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549
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<pre style="margin: 0;">+<span id="LC549" class="line" lang="cpp"></span>
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550
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<pre style="margin: 0;">+<span id="LC550" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">pagesize</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">MemoryStatistics</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">getPageSize</span><span class="p">();</span></span>
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551
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<pre style="margin: 0;">+<span id="LC551" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#if defined(_WIN32)</span></span>
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552
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<pre style="margin: 0;">+<span id="LC552" class="line" lang="cpp"> <span class="n" style="color: #333;">array</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="n" style="color: #333;">_aligned_malloc</span><span class="p">(</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">),</span> <span class="n" style="color: #333;">pagesize</span> <span class="p">));</span></span>
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553
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<pre style="margin: 0;">+<span id="LC553" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="o" style="font-weight: 600;">!</span> <span class="n" style="color: #333;">array</span> <span class="p">)</span></span>
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554
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<pre style="margin: 0;">+<span id="LC554" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span><span class="p">();</span></span>
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<pre style="margin: 0;">+<span id="LC555" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#elif defined(LIBMAUS2_HAVE_POSIX_MEMALIGN)</span></span>
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556
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<pre style="margin: 0;">+<span id="LC556" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">posix_memalign</span><span class="p">(</span><span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">void</span><span class="o" style="font-weight: 600;">**></span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">array</span><span class="p">),</span><span class="n" style="color: #333;">pagesize</span><span class="p">,</span><span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">)</span> <span class="p">);</span></span>
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557
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<pre style="margin: 0;">+<span id="LC557" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">r</span> <span class="p">)</span></span>
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558
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<pre style="margin: 0;">+<span id="LC558" class="line" lang="cpp"> <span class="p">{</span></span>
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559
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<pre style="margin: 0;">+<span id="LC559" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">aerrno</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">r</span><span class="p">;</span></span>
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560
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<pre style="margin: 0;">+<span id="LC560" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"allocation failure: "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">strerror</span><span class="p">(</span><span class="n" style="color: #333;">aerrno</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" pagesize="</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">pagesize</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" requested size is "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">n</span><span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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561
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<pre style="margin: 0;">+<span id="LC561" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span><span class="p">();</span></span>
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562
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<pre style="margin: 0;">+<span id="LC562" class="line" lang="cpp"> <span class="p">}</span></span>
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563
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<pre style="margin: 0;">+<span id="LC563" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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564
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<pre style="margin: 0;">+<span id="LC564" class="line" lang="cpp"> <span class="n" style="color: #333;">array</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">AlignedAllocation</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">atype</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">alignedAllocate</span><span class="p">(</span><span class="n" style="color: #333;">n</span><span class="p">,</span><span class="n" style="color: #333;">pagesize</span><span class="p">);</span></span>
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565
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<pre style="margin: 0;">+<span id="LC565" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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566
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<pre style="margin: 0;">+<span id="LC566" class="line" lang="cpp"></span>
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567
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<pre style="margin: 0;">+<span id="LC567" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">array</span><span class="p">;</span></span>
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568
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<pre style="margin: 0;">+<span id="LC568" class="line" lang="cpp"> <span class="p">}</span></span>
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569
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<pre style="margin: 0;">+<span id="LC569" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">catch</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">ex</span><span class="p">)</span></span>
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570
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<pre style="margin: 0;">+<span id="LC570" class="line" lang="cpp"> <span class="p">{</span></span>
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571
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<pre style="margin: 0;">+<span id="LC571" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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572
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<pre style="margin: 0;">+<span id="LC572" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span></span>
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573
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<pre style="margin: 0;">+<span id="LC573" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">AutoArrayBase</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">alloc_type_memalign_pagesize</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">getTypeName</span><span class="p">()</span></span>
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574
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<pre style="margin: 0;">+<span id="LC574" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" failed to allocate "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" elements ("</span></span>
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575
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<pre style="margin: 0;">+<span id="LC575" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">n</span><span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" bytes)"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span></span>
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576
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<pre style="margin: 0;">+<span id="LC576" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"current total allocation "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">AutoArray_memusage</span></span>
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577
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<pre style="margin: 0;">+<span id="LC577" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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578
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<pre style="margin: 0;">+<span id="LC578" class="line" lang="cpp"> <span class="p">;</span></span>
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579
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<pre style="margin: 0;">+<span id="LC579" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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580
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<pre style="margin: 0;">+<span id="LC580" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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581
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<pre style="margin: 0;">+<span id="LC581" class="line" lang="cpp"> <span class="p">}</span></span>
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582
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<pre style="margin: 0;">+<span id="LC582" class="line" lang="cpp"> <span class="p">}</span></span>
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583
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<pre style="margin: 0;">+<span id="LC583" class="line" lang="cpp"></span>
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584
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<pre style="margin: 0;">+<span id="LC584" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">deallocate</span><span class="p">(</span><span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">array</span><span class="p">)</span></span>
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585
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<pre style="margin: 0;">+<span id="LC585" class="line" lang="cpp"> <span class="p">{</span></span>
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586
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<pre style="margin: 0;">+<span id="LC586" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#if defined(_WIN32) || defined(LIBMAUS2_HAVE_POSIX_MEMALIGN)</span></span>
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587
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<pre style="margin: 0;">+<span id="LC587" class="line" lang="cpp"> <span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">array</span><span class="p">);</span></span>
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588
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<pre style="margin: 0;">+<span id="LC588" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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589
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<pre style="margin: 0;">+<span id="LC589" class="line" lang="cpp"> <span class="n" style="color: #333;">AlignedAllocation</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">alloc_type_memalign_pagesize</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">freeAligned</span><span class="p">(</span><span class="n" style="color: #333;">array</span><span class="p">);</span></span>
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590
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<pre style="margin: 0;">+<span id="LC590" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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591
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<pre style="margin: 0;">+<span id="LC591" class="line" lang="cpp"> <span class="p">}</span></span>
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592
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<pre style="margin: 0;">+<span id="LC592" class="line" lang="cpp"> <span class="p">};</span></span>
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593
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<pre style="margin: 0;">+<span id="LC593" class="line" lang="cpp"></span>
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594
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<pre style="margin: 0;">+<span id="LC594" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">template</span><span class="o" style="font-weight: 600;"><</span><span class="k" style="font-weight: 600;">typename</span> <span class="n" style="color: #333;">N</span><span class="o" style="font-weight: 600;">></span></span>
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595
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<pre style="margin: 0;">+<span id="LC595" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">AutoArrayAllocate</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">alloc_type_hugepages</span><span class="o" style="font-weight: 600;">></span></span>
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596
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<pre style="margin: 0;">+<span id="LC596" class="line" lang="cpp"> <span class="p">{</span></span>
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597
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<pre style="margin: 0;">+<span id="LC597" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">allocate</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">n</span><span class="p">)</span></span>
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598
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<pre style="margin: 0;">+<span id="LC598" class="line" lang="cpp"> <span class="p">{</span></span>
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599
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<pre style="margin: 0;">+<span id="LC599" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">try</span></span>
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600
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<pre style="margin: 0;">+<span id="LC600" class="line" lang="cpp"> <span class="p">{</span></span>
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601
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<pre style="margin: 0;">+<span id="LC601" class="line" lang="cpp"> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">array</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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602
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<pre style="margin: 0;">+<span id="LC602" class="line" lang="cpp"></span>
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603
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<pre style="margin: 0;">+<span id="LC603" class="line" lang="cpp"> <span class="n" style="color: #333;">array</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">HugePages</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">getHugePageObject</span><span class="p">().</span><span class="n" style="color: #333;">malloc</span><span class="p">(</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">),</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">)</span> <span class="p">));</span></span>
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604
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<pre style="margin: 0;">+<span id="LC604" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="o" style="font-weight: 600;">!</span> <span class="n" style="color: #333;">array</span> <span class="p">)</span></span>
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605
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<pre style="margin: 0;">+<span id="LC605" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span><span class="p">();</span></span>
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606
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<pre style="margin: 0;">+<span id="LC606" class="line" lang="cpp"></span>
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607
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<pre style="margin: 0;">+<span id="LC607" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">array</span><span class="p">;</span></span>
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608
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<pre style="margin: 0;">+<span id="LC608" class="line" lang="cpp"> <span class="p">}</span></span>
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609
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<pre style="margin: 0;">+<span id="LC609" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">catch</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">ex</span><span class="p">)</span></span>
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610
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<pre style="margin: 0;">+<span id="LC610" class="line" lang="cpp"> <span class="p">{</span></span>
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611
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<pre style="margin: 0;">+<span id="LC611" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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612
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<pre style="margin: 0;">+<span id="LC612" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span></span>
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613
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<pre style="margin: 0;">+<span id="LC613" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">AutoArrayBase</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">alloc_type_hugepages</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">getTypeName</span><span class="p">()</span></span>
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614
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<pre style="margin: 0;">+<span id="LC614" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" failed to allocate "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" elements ("</span></span>
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615
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<pre style="margin: 0;">+<span id="LC615" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">n</span><span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" bytes)"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span></span>
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616
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<pre style="margin: 0;">+<span id="LC616" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"current total allocation "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">AutoArray_memusage</span></span>
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617
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<pre style="margin: 0;">+<span id="LC617" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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618
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<pre style="margin: 0;">+<span id="LC618" class="line" lang="cpp"> <span class="p">;</span></span>
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619
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<pre style="margin: 0;">+<span id="LC619" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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620
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<pre style="margin: 0;">+<span id="LC620" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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621
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<pre style="margin: 0;">+<span id="LC621" class="line" lang="cpp"> <span class="p">}</span></span>
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622
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<pre style="margin: 0;">+<span id="LC622" class="line" lang="cpp"> <span class="p">}</span></span>
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623
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<pre style="margin: 0;">+<span id="LC623" class="line" lang="cpp"></span>
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624
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<pre style="margin: 0;">+<span id="LC624" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">deallocate</span><span class="p">(</span><span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">array</span><span class="p">)</span></span>
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625
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<pre style="margin: 0;">+<span id="LC625" class="line" lang="cpp"> <span class="p">{</span></span>
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626
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<pre style="margin: 0;">+<span id="LC626" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">HugePages</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">getHugePageObject</span><span class="p">().</span><span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">array</span><span class="p">);</span></span>
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627
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<pre style="margin: 0;">+<span id="LC627" class="line" lang="cpp"> <span class="p">}</span></span>
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628
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<pre style="margin: 0;">+<span id="LC628" class="line" lang="cpp"> <span class="p">};</span></span>
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629
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<pre style="margin: 0;">+<span id="LC629" class="line" lang="cpp"></span>
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630
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<pre style="margin: 0;">+<span id="LC630" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">template</span><span class="o" style="font-weight: 600;"><</span><span class="k" style="font-weight: 600;">typename</span> <span class="n" style="color: #333;">N</span><span class="o" style="font-weight: 600;">></span></span>
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631
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<pre style="margin: 0;">+<span id="LC631" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">AutoArrayAllocate</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">alloc_type_hugepages_memalign_cacheline</span><span class="o" style="font-weight: 600;">></span></span>
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632
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<pre style="margin: 0;">+<span id="LC632" class="line" lang="cpp"> <span class="p">{</span></span>
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633
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<pre style="margin: 0;">+<span id="LC633" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">allocate</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">n</span><span class="p">)</span></span>
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634
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<pre style="margin: 0;">+<span id="LC634" class="line" lang="cpp"> <span class="p">{</span></span>
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635
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<pre style="margin: 0;">+<span id="LC635" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">try</span></span>
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636
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<pre style="margin: 0;">+<span id="LC636" class="line" lang="cpp"> <span class="p">{</span></span>
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637
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<pre style="margin: 0;">+<span id="LC637" class="line" lang="cpp"> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">array</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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638
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<pre style="margin: 0;">+<span id="LC638" class="line" lang="cpp"></span>
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639
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<pre style="margin: 0;">+<span id="LC639" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">cachelinesize</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">AutoArrayBase</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">alloc_type_hugepages_memalign_cacheline</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">getCacheLineSize</span><span class="p">();</span></span>
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640
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<pre style="margin: 0;">+<span id="LC640" class="line" lang="cpp"> <span class="n" style="color: #333;">array</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">HugePages</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">getHugePageObject</span><span class="p">().</span><span class="n" style="color: #333;">malloc</span><span class="p">(</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">),</span> <span class="n" style="color: #333;">cachelinesize</span> <span class="p">));</span></span>
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<pre style="margin: 0;">+<span id="LC641" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="o" style="font-weight: 600;">!</span> <span class="n" style="color: #333;">array</span> <span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC642" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span><span class="p">();</span></span>
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643
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<pre style="margin: 0;">+<span id="LC643" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC644" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">array</span><span class="p">;</span></span>
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645
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<pre style="margin: 0;">+<span id="LC645" class="line" lang="cpp"> <span class="p">}</span></span>
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646
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<pre style="margin: 0;">+<span id="LC646" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">catch</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">ex</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC647" class="line" lang="cpp"> <span class="p">{</span></span>
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648
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<pre style="margin: 0;">+<span id="LC648" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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649
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<pre style="margin: 0;">+<span id="LC649" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span></span>
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650
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<pre style="margin: 0;">+<span id="LC650" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">AutoArrayBase</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">alloc_type_hugepages_memalign_cacheline</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">getTypeName</span><span class="p">()</span></span>
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651
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<pre style="margin: 0;">+<span id="LC651" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" failed to allocate "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" elements ("</span></span>
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652
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<pre style="margin: 0;">+<span id="LC652" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">n</span><span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" bytes)"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span></span>
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653
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<pre style="margin: 0;">+<span id="LC653" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"current total allocation "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">AutoArray_memusage</span></span>
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654
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<pre style="margin: 0;">+<span id="LC654" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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655
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<pre style="margin: 0;">+<span id="LC655" class="line" lang="cpp"> <span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC656" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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657
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<pre style="margin: 0;">+<span id="LC657" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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658
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<pre style="margin: 0;">+<span id="LC658" class="line" lang="cpp"> <span class="p">}</span></span>
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659
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<pre style="margin: 0;">+<span id="LC659" class="line" lang="cpp"> <span class="p">}</span></span>
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660
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<pre style="margin: 0;">+<span id="LC660" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC661" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">deallocate</span><span class="p">(</span><span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">array</span><span class="p">)</span></span>
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662
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<pre style="margin: 0;">+<span id="LC662" class="line" lang="cpp"> <span class="p">{</span></span>
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663
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<pre style="margin: 0;">+<span id="LC663" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">HugePages</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">getHugePageObject</span><span class="p">().</span><span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">array</span><span class="p">);</span></span>
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664
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<pre style="margin: 0;">+<span id="LC664" class="line" lang="cpp"> <span class="p">}</span></span>
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665
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<pre style="margin: 0;">+<span id="LC665" class="line" lang="cpp"> <span class="p">};</span></span>
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666
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<pre style="margin: 0;">+<span id="LC666" class="line" lang="cpp"></span>
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667
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<pre style="margin: 0;">+<span id="LC667" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">template</span><span class="o" style="font-weight: 600;"><</span><span class="k" style="font-weight: 600;">typename</span> <span class="n" style="color: #333;">N</span><span class="o" style="font-weight: 600;">></span></span>
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668
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<pre style="margin: 0;">+<span id="LC668" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">AutoArrayAllocate</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">alloc_type_hugepages_memalign_pagesize</span><span class="o" style="font-weight: 600;">></span></span>
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669
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<pre style="margin: 0;">+<span id="LC669" class="line" lang="cpp"> <span class="p">{</span></span>
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670
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<pre style="margin: 0;">+<span id="LC670" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">allocate</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">n</span><span class="p">)</span></span>
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671
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<pre style="margin: 0;">+<span id="LC671" class="line" lang="cpp"> <span class="p">{</span></span>
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672
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<pre style="margin: 0;">+<span id="LC672" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">try</span></span>
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673
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<pre style="margin: 0;">+<span id="LC673" class="line" lang="cpp"> <span class="p">{</span></span>
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674
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<pre style="margin: 0;">+<span id="LC674" class="line" lang="cpp"> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">array</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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675
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<pre style="margin: 0;">+<span id="LC675" class="line" lang="cpp"></span>
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676
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<pre style="margin: 0;">+<span id="LC676" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">cachelinesize</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">MemoryStatistics</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">getPageSize</span><span class="p">();</span></span>
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677
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<pre style="margin: 0;">+<span id="LC677" class="line" lang="cpp"> <span class="n" style="color: #333;">array</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">HugePages</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">getHugePageObject</span><span class="p">().</span><span class="n" style="color: #333;">malloc</span><span class="p">(</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">),</span> <span class="n" style="color: #333;">cachelinesize</span> <span class="p">));</span></span>
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678
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<pre style="margin: 0;">+<span id="LC678" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="o" style="font-weight: 600;">!</span> <span class="n" style="color: #333;">array</span> <span class="p">)</span></span>
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679
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<pre style="margin: 0;">+<span id="LC679" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span><span class="p">();</span></span>
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680
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<pre style="margin: 0;">+<span id="LC680" class="line" lang="cpp"></span>
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681
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<pre style="margin: 0;">+<span id="LC681" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">array</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC682" class="line" lang="cpp"> <span class="p">}</span></span>
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683
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<pre style="margin: 0;">+<span id="LC683" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">catch</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">ex</span><span class="p">)</span></span>
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684
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<pre style="margin: 0;">+<span id="LC684" class="line" lang="cpp"> <span class="p">{</span></span>
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685
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<pre style="margin: 0;">+<span id="LC685" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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686
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<pre style="margin: 0;">+<span id="LC686" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span></span>
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687
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<pre style="margin: 0;">+<span id="LC687" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">AutoArrayBase</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">alloc_type_hugepages_memalign_pagesize</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">getTypeName</span><span class="p">()</span></span>
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688
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<pre style="margin: 0;">+<span id="LC688" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" failed to allocate "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" elements ("</span></span>
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689
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<pre style="margin: 0;">+<span id="LC689" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">n</span><span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" bytes)"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span></span>
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690
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<pre style="margin: 0;">+<span id="LC690" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"current total allocation "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">AutoArray_memusage</span></span>
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691
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<pre style="margin: 0;">+<span id="LC691" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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692
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<pre style="margin: 0;">+<span id="LC692" class="line" lang="cpp"> <span class="p">;</span></span>
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693
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<pre style="margin: 0;">+<span id="LC693" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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694
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<pre style="margin: 0;">+<span id="LC694" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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695
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<pre style="margin: 0;">+<span id="LC695" class="line" lang="cpp"> <span class="p">}</span></span>
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696
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<pre style="margin: 0;">+<span id="LC696" class="line" lang="cpp"> <span class="p">}</span></span>
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697
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<pre style="margin: 0;">+<span id="LC697" class="line" lang="cpp"></span>
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698
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<pre style="margin: 0;">+<span id="LC698" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">deallocate</span><span class="p">(</span><span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">array</span><span class="p">)</span></span>
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699
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<pre style="margin: 0;">+<span id="LC699" class="line" lang="cpp"> <span class="p">{</span></span>
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700
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<pre style="margin: 0;">+<span id="LC700" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">HugePages</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">getHugePageObject</span><span class="p">().</span><span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">array</span><span class="p">);</span></span>
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701
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<pre style="margin: 0;">+<span id="LC701" class="line" lang="cpp"> <span class="p">}</span></span>
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702
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<pre style="margin: 0;">+<span id="LC702" class="line" lang="cpp"> <span class="p">};</span></span>
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297
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704
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<pre style="margin: 0;"> <span id="LC704" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#if defined(LIBMAUS2_AUTOARRAY_AUTOARRAYTRACE)</span></span>
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298
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705
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<pre style="margin: 0;"> <span id="LC705" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">extern</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">AutoArrayBackTrace</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">LIBMAUS2_AUTOARRAY_AUTOARRAYTRACE</span><span class="o" style="font-weight: 600;">></span> <span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">tracevector</span><span class="p">;</span></span>
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299
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706
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<pre style="margin: 0;"> <span id="LC706" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">extern</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StdSpinLock</span> <span class="n" style="color: #333;">backtracelock</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="307" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="714" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -307,10 +714,10 @@ namespace libmaus2</td>
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307
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714
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<pre style="margin: 0;"> <span id="LC714" class="line" lang="cpp"> <span class="p">{</span></span>
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308
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715
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<pre style="margin: 0;"> <span id="LC715" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">reallocate</span><span class="p">(</span><span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">p</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">rn</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">n</span><span class="p">)</span></span>
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309
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<td class="diff-line-num new_line" data-linenumber="716" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
716
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<pre style="margin: 0;"> <span id="LC716" class="line" lang="cpp"> <span class="p">{</span></span>
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310
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<pre style="margin: 0;">-<span id="LC310" class="line" lang="cpp"> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">np</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;"><span class="idiff left">new</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">N</span></span><span class="p"><span class="idiff">[</span></span><span class="n" style="color: #333;"><span class="idiff">n</span></span><span class="p"><span class="idiff right">]</span>;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="717" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
717
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<pre style="margin: 0;">+<span id="LC717" class="line" lang="cpp"> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">np</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left">AutoArrayAllocate</span></span><span class="o" style="font-weight: 600;"><span class="idiff"><</span></span><span class="n" style="color: #333;"><span class="idiff">N</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">atype</span></span><span class="o" style="font-weight: 600;"><span class="idiff">>::</span></span><span class="n" style="color: #333;"><span class="idiff">allocate</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">n</span></span><span class="p"><span class="idiff right">)</span>;</span></span>
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<td class="diff-line-num old_line" data-linenumber="311" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
311
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718
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<pre style="margin: 0;"> <span id="LC718" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">tocopy</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">min</span><span class="p">(</span><span class="n" style="color: #333;">rn</span><span class="p">,</span><span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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<td class="diff-line-num old_line" data-linenumber="312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
312
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<td class="diff-line-num new_line" data-linenumber="719" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
719
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<pre style="margin: 0;"> <span id="LC719" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">copy</span><span class="p">(</span><span class="n" style="color: #333;">p</span><span class="p">,</span><span class="n" style="color: #333;">p</span><span class="o" style="font-weight: 600;">+</span><span class="n" style="color: #333;">tocopy</span><span class="p">,</span><span class="n" style="color: #333;">np</span><span class="p">);</span></span>
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313
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<pre style="margin: 0;">-<span id="LC313" class="line" lang="cpp"> <span class="k" style="font-weight: 600;"><span class="idiff left">delete</span></span><span class="idiff"> </span><span class="p"><span class="idiff">[]</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">p</span></span><span class="p">;</span></span>
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720
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<pre style="margin: 0;">+<span id="LC720" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left">AutoArrayAllocate</span></span><span class="o" style="font-weight: 600;"><span class="idiff"><</span></span><span class="n" style="color: #333;"><span class="idiff">N</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">atype</span></span><span class="o" style="font-weight: 600;"><span class="idiff">>::</span></span><span class="n" style="color: #333;"><span class="idiff">deallocate</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">p</span></span><span class="p"><span class="idiff right">)</span>;</span></span>
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314
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721
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<pre style="margin: 0;"> <span id="LC721" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">np</span><span class="p">;</span></span>
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315
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722
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<pre style="margin: 0;"> <span id="LC722" class="line" lang="cpp"> <span class="p">}</span></span>
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723
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<pre style="margin: 0;"> <span id="LC723" class="line" lang="cpp"> <span class="p">};</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="327" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="734" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -327,11 +734,12 @@ namespace libmaus2</td>
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327
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734
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<pre style="margin: 0;"> <span id="LC734" class="line" lang="cpp"> <span class="p">}</span></span>
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328
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735
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<pre style="margin: 0;"> <span id="LC735" class="line" lang="cpp"> <span class="p">};</span></span>
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736
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<pre style="margin: 0;"> <span id="LC736" class="line" lang="cpp"></span>
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737
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<pre style="margin: 0;">+<span id="LC737" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC738" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/**</span></span>
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<pre style="margin: 0;"> <span id="LC739" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * array with automatic deallocation</span></span>
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740
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<pre style="margin: 0;"> <span id="LC740" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> */</span></span>
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741
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<pre style="margin: 0;"> <span id="LC741" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">template</span><span class="o" style="font-weight: 600;"><</span><span class="k" style="font-weight: 600;">typename</span> <span class="n" style="color: #333;">N</span><span class="p">,</span> <span class="n" style="color: #333;">alloc_type</span> <span class="n" style="color: #333;">atype</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">alloc_type_cxx</span><span class="p">,</span> <span class="k" style="font-weight: 600;">typename</span> <span class="n" style="color: #333;">erase_type</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">ArrayErase</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="o" style="font-weight: 600;">></span> <span class="o" style="font-weight: 600;">></span></span>
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<pre style="margin: 0;">-<span id="LC334" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">AutoArray</span></span>
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<pre style="margin: 0;">+<span id="LC742" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">AutoArray</span><span class="idiff left"> </span><span class="o" style="font-weight: 600;"><span class="idiff">:</span></span><span class="idiff"> </span><span class="k" style="font-weight: 600;"><span class="idiff">public</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">AutoArrayBase</span></span><span class="o" style="font-weight: 600;"><span class="idiff"><</span></span><span class="n" style="color: #333;"><span class="idiff">N</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">atype</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">></span></span></span>
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<pre style="margin: 0;"> <span id="LC743" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC744" class="line" lang="cpp"> <span class="nl">public:</span></span>
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<pre style="margin: 0;"> <span id="LC745" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">//! element type</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -476,7 +884,7 @@ namespace libmaus2</td>
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884
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<pre style="margin: 0;"> <span id="LC884" class="line" lang="cpp"> <span class="n" style="color: #333;">__sync_fetch_and_sub</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">AutoArray_memusage</span><span class="p">,</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">));</span></span>
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885
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<pre style="margin: 0;"> <span id="LC885" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC886" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC479" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"libmaus2::autoarray::AutoArray<"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">getValueTypeName</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">">::increaseTotalAllocation: bad allocation: AutoArray mem limit of "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">AutoArray_maxmem</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" bytes exceeded by new allocation of "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">n</span><span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" bytes."</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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887
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<pre style="margin: 0;">+<span id="LC887" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"libmaus2::autoarray::AutoArray<"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;"><span class="idiff left">AutoArrayBase</span></span><span class="o" style="font-weight: 600;"><span class="idiff"><</span></span><span class="n" style="color: #333;"><span class="idiff">value_type</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">atype</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">>::</span></span><span class="n" style="color: #333;">getValueTypeName</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">">::increaseTotalAllocation: bad allocation: AutoArray mem limit of "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">AutoArray_maxmem</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" bytes exceeded by new allocation of "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">n</span><span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" bytes."</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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888
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<pre style="margin: 0;"> <span id="LC888" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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481
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<pre style="margin: 0;"> <span id="LC889" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC890" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="954" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -546,103 +954,7 @@ namespace libmaus2</td>
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954
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<pre style="margin: 0;"> <span id="LC954" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> **/</span></span>
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<pre style="margin: 0;"> <span id="LC955" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">allocateArray</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">n</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC956" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC549" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">try</span></span>
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<pre style="margin: 0;">-<span id="LC550" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC551" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">switch</span> <span class="p">(</span> <span class="n" style="color: #333;">atype</span> <span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC552" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC553" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_cxx</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC554" class="line" lang="cpp"> <span class="n" style="color: #333;">array</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">N</span><span class="p">[</span><span class="n" style="color: #333;">n</span><span class="p">];</span></span>
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<pre style="margin: 0;">-<span id="LC555" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC556" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_c</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC557" class="line" lang="cpp"> <span class="n" style="color: #333;">array</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="n" style="color: #333;">malloc</span><span class="p">(</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">)</span> <span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC558" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="o" style="font-weight: 600;">!</span> <span class="n" style="color: #333;">array</span> <span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC559" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span><span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC560" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC561" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_memalign_cacheline</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC562" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC563" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">cachelinesize</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">getCacheLineSize</span><span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC564" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#if defined(_WIN32)</span></span>
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<pre style="margin: 0;">-<span id="LC565" class="line" lang="cpp"> <span class="n" style="color: #333;">array</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="n" style="color: #333;">_aligned_malloc</span><span class="p">(</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">),</span> <span class="n" style="color: #333;">cachelinesize</span> <span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC566" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="o" style="font-weight: 600;">!</span> <span class="n" style="color: #333;">array</span> <span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC567" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span><span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC568" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#elif defined(LIBMAUS2_HAVE_POSIX_MEMALIGN)</span></span>
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<pre style="margin: 0;">-<span id="LC569" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">posix_memalign</span><span class="p">(</span><span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">void</span><span class="o" style="font-weight: 600;">**></span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">array</span><span class="p">),</span><span class="n" style="color: #333;">cachelinesize</span><span class="p">,</span><span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">)</span> <span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC570" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">r</span> <span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC571" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC572" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">aerrno</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">r</span><span class="p">;</span></span>
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573
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<pre style="margin: 0;">-<span id="LC573" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"allocation failure: "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">strerror</span><span class="p">(</span><span class="n" style="color: #333;">aerrno</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" cachelinesize="</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">cachelinesize</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" requested size is "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">n</span><span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC574" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span><span class="p">();</span></span>
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575
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<pre style="margin: 0;">-<span id="LC575" class="line" lang="cpp"> <span class="p">}</span></span>
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576
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<pre style="margin: 0;">-<span id="LC576" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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577
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<pre style="margin: 0;">-<span id="LC577" class="line" lang="cpp"> <span class="n" style="color: #333;">array</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">AlignedAllocation</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">atype</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">alignedAllocate</span><span class="p">(</span><span class="n" style="color: #333;">n</span><span class="p">,</span><span class="n" style="color: #333;">cachelinesize</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC578" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">-<span id="LC579" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC580" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC581" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_memalign_pagesize</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC582" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC583" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">pagesize</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">MemoryStatistics</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">getPageSize</span><span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC584" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#if defined(_WIN32)</span></span>
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<pre style="margin: 0;">-<span id="LC585" class="line" lang="cpp"> <span class="n" style="color: #333;">array</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="n" style="color: #333;">_aligned_malloc</span><span class="p">(</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">),</span> <span class="n" style="color: #333;">pagesize</span> <span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC586" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="o" style="font-weight: 600;">!</span> <span class="n" style="color: #333;">array</span> <span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC587" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span><span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC588" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#elif defined(LIBMAUS2_HAVE_POSIX_MEMALIGN)</span></span>
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<pre style="margin: 0;">-<span id="LC589" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">posix_memalign</span><span class="p">(</span><span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">void</span><span class="o" style="font-weight: 600;">**></span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">array</span><span class="p">),</span><span class="n" style="color: #333;">pagesize</span><span class="p">,</span><span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">)</span> <span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC590" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">r</span> <span class="p">)</span></span>
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591
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<pre style="margin: 0;">-<span id="LC591" class="line" lang="cpp"> <span class="p">{</span></span>
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592
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<pre style="margin: 0;">-<span id="LC592" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">aerrno</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">r</span><span class="p">;</span></span>
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593
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<pre style="margin: 0;">-<span id="LC593" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"allocation failure: "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">strerror</span><span class="p">(</span><span class="n" style="color: #333;">aerrno</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" pagesize="</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">pagesize</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" requested size is "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">n</span><span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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594
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<pre style="margin: 0;">-<span id="LC594" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span><span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC595" class="line" lang="cpp"> <span class="p">}</span></span>
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596
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<pre style="margin: 0;">-<span id="LC596" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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597
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<pre style="margin: 0;">-<span id="LC597" class="line" lang="cpp"> <span class="n" style="color: #333;">array</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">AlignedAllocation</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">atype</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">alignedAllocate</span><span class="p">(</span><span class="n" style="color: #333;">n</span><span class="p">,</span><span class="n" style="color: #333;">pagesize</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC598" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">-<span id="LC599" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC600" class="line" lang="cpp"> <span class="p">}</span></span>
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601
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<pre style="margin: 0;">-<span id="LC601" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_hugepages</span><span class="p">:</span></span>
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602
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<pre style="margin: 0;">-<span id="LC602" class="line" lang="cpp"> <span class="p">{</span></span>
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603
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<pre style="margin: 0;">-<span id="LC603" class="line" lang="cpp"> <span class="n" style="color: #333;">array</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">HugePages</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">getHugePageObject</span><span class="p">().</span><span class="n" style="color: #333;">malloc</span><span class="p">(</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">),</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">)</span> <span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC604" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="o" style="font-weight: 600;">!</span> <span class="n" style="color: #333;">array</span> <span class="p">)</span></span>
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605
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<pre style="margin: 0;">-<span id="LC605" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span><span class="p">();</span></span>
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606
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<pre style="margin: 0;">-<span id="LC606" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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607
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<pre style="margin: 0;">-<span id="LC607" class="line" lang="cpp"> <span class="p">}</span></span>
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608
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<pre style="margin: 0;">-<span id="LC608" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_hugepages_memalign_cacheline</span><span class="p">:</span></span>
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609
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<pre style="margin: 0;">-<span id="LC609" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC610" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">cachelinesize</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">getCacheLineSize</span><span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC611" class="line" lang="cpp"> <span class="n" style="color: #333;">array</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">HugePages</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">getHugePageObject</span><span class="p">().</span><span class="n" style="color: #333;">malloc</span><span class="p">(</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">),</span> <span class="n" style="color: #333;">cachelinesize</span> <span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC612" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="o" style="font-weight: 600;">!</span> <span class="n" style="color: #333;">array</span> <span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC613" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span><span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC614" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC615" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC616" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC617" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_hugepages_memalign_pagesize</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC618" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC619" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">cachelinesize</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">MemoryStatistics</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">getPageSize</span><span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC620" class="line" lang="cpp"> <span class="n" style="color: #333;">array</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">HugePages</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">getHugePageObject</span><span class="p">().</span><span class="n" style="color: #333;">malloc</span><span class="p">(</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">),</span> <span class="n" style="color: #333;">cachelinesize</span> <span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC621" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="o" style="font-weight: 600;">!</span> <span class="n" style="color: #333;">array</span> <span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC622" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span><span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC623" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC624" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC625" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC626" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC627" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC628" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">catch</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bad_alloc</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">ex</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC629" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC630" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">bool</span> <span class="n" style="color: #333;">topfailed</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">false</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC631" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">system</span><span class="p">(</span><span class="s" style="color: #d14;">"top -b -n1"</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">0</span> <span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC632" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC633" class="line" lang="cpp"> <span class="n" style="color: #333;">topfailed</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">true</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC634" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC635" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC636" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span></span>
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<pre style="margin: 0;">-<span id="LC637" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">getTypeName</span><span class="p">()</span></span>
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<pre style="margin: 0;">-<span id="LC638" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" failed to allocate "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" elements ("</span></span>
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<pre style="margin: 0;">-<span id="LC639" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">n</span><span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">N</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" bytes)"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span></span>
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<pre style="margin: 0;">-<span id="LC640" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"current total allocation "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">AutoArray_memusage</span></span>
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<pre style="margin: 0;">-<span id="LC641" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><<</span> <span class="p">(</span><span class="n" style="color: #333;">topfailed</span> <span class="o" style="font-weight: 600;">?</span> <span class="s" style="color: #d14;">" (system(top -b -n1) failed)"</span> <span class="o" style="font-weight: 600;">:</span> <span class="s" style="color: #d14;">""</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC642" class="line" lang="cpp"> <span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC643" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC644" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC645" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC957" class="line" lang="cpp"> <span class="n" style="color: #333;">array</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">AutoArrayAllocate</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">value_type</span><span class="p">,</span><span class="n" style="color: #333;">atype</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">allocate</span><span class="p">(</span><span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC958" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC959" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC960" class="line" lang="cpp"> <span class="nl">public:</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -724,49 +1036,6 @@ namespace libmaus2</td>
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<pre style="margin: 0;"> <span id="LC1036" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">I</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC1037" class="line" lang="cpp"> <span class="p">}</span></span>
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1038
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<pre style="margin: 0;"> <span id="LC1038" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC727" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/**</span></span>
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728
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<pre style="margin: 0;">-<span id="LC728" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * return name of value type</span></span>
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<pre style="margin: 0;">-<span id="LC729" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * @return name of value type</span></span>
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730
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<pre style="margin: 0;">-<span id="LC730" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> **/</span></span>
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<pre style="margin: 0;">-<span id="LC731" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="n" style="color: #333;">getValueTypeName</span><span class="p">()</span></span>
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732
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<pre style="margin: 0;">-<span id="LC732" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="733" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
733
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<pre style="margin: 0;">-<span id="LC733" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">Demangle</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">demangle</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">value_type</span><span class="o" style="font-weight: 600;">></span><span class="p">();</span></span>
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734
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<pre style="margin: 0;">-<span id="LC734" class="line" lang="cpp"> <span class="p">}</span></span>
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735
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<pre style="margin: 0;">-<span id="LC735" class="line" lang="cpp"></span>
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736
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<pre style="margin: 0;">-<span id="LC736" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/**</span></span>
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737
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<td class="diff-line-num new_line old" data-linenumber="1039" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC737" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * return name of allocation type</span></span>
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<td class="diff-line-num old old_line" data-linenumber="738" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
738
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<pre style="margin: 0;">-<span id="LC738" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * @return name of allocation type</span></span>
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739
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<pre style="margin: 0;">-<span id="LC739" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> **/</span></span>
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<td class="diff-line-num old old_line" data-linenumber="740" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
740
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<td class="diff-line-num new_line old" data-linenumber="1039" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC740" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="n" style="color: #333;">getAllocTypeName</span><span class="p">()</span></span>
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741
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<pre style="margin: 0;">-<span id="LC741" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="742" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
742
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<pre style="margin: 0;">-<span id="LC742" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">switch</span> <span class="p">(</span> <span class="n" style="color: #333;">atype</span> <span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="743" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
743
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<pre style="margin: 0;">-<span id="LC743" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="744" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
744
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<td class="diff-line-num new_line old" data-linenumber="1039" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC744" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_cxx</span><span class="p">:</span></span>
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<td class="diff-line-num old old_line" data-linenumber="745" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
745
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<td class="diff-line-num new_line old" data-linenumber="1039" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC745" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="s" style="color: #d14;">"alloc_type_cxx"</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="746" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
746
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<td class="diff-line-num new_line old" data-linenumber="1039" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC746" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_c</span><span class="p">:</span></span>
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<td class="diff-line-num old old_line" data-linenumber="747" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
747
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<pre style="margin: 0;">-<span id="LC747" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="s" style="color: #d14;">"alloc_type_c"</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="748" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
748
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<td class="diff-line-num new_line old" data-linenumber="1039" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC748" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_memalign_cacheline</span><span class="p">:</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="749" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
749
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<td class="diff-line-num new_line old" data-linenumber="1039" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC749" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="s" style="color: #d14;">"alloc_type_memalign_cacheline"</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC750" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_memalign_pagesize</span><span class="p">:</span></span>
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<pre style="margin: 0;">-<span id="LC751" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="s" style="color: #d14;">"alloc_type_memalign_pagesize"</span><span class="p">;</span></span>
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752
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<pre style="margin: 0;">-<span id="LC752" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_hugepages</span><span class="p">:</span></span>
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753
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<pre style="margin: 0;">-<span id="LC753" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="s" style="color: #d14;">"alloc_type_hugepages"</span><span class="p">;</span></span>
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754
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<pre style="margin: 0;">-<span id="LC754" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_hugepages_memalign_cacheline</span><span class="p">:</span></span>
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755
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<pre style="margin: 0;">-<span id="LC755" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="s" style="color: #d14;">"alloc_type_memalign_cacheline"</span><span class="p">;</span></span>
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756
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<pre style="margin: 0;">-<span id="LC756" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_hugepages_memalign_pagesize</span><span class="p">:</span></span>
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757
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<pre style="margin: 0;">-<span id="LC757" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="s" style="color: #d14;">"alloc_type_memalign_pagesize"</span><span class="p">;</span></span>
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758
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<pre style="margin: 0;">-<span id="LC758" class="line" lang="cpp"> <span class="nl">default:</span></span>
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759
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<pre style="margin: 0;">-<span id="LC759" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="s" style="color: #d14;">"alloc_type_unknown"</span><span class="p">;</span></span>
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760
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<pre style="margin: 0;">-<span id="LC760" class="line" lang="cpp"> <span class="p">}</span></span>
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761
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<pre style="margin: 0;">-<span id="LC761" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC762" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/**</span></span>
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<pre style="margin: 0;">-<span id="LC763" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * return full type name of array class</span></span>
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<pre style="margin: 0;">-<span id="LC764" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * @return full type name of array class</span></span>
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765
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<pre style="margin: 0;">-<span id="LC765" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> **/</span></span>
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<pre style="margin: 0;">-<span id="LC766" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="n" style="color: #333;">getTypeName</span><span class="p">()</span></span>
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767
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<pre style="margin: 0;">-<span id="LC767" class="line" lang="cpp"> <span class="p">{</span></span>
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768
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<pre style="margin: 0;">-<span id="LC768" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span><span class="p">(</span><span class="s" style="color: #d14;">"AutoArray<"</span><span class="p">)</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">getValueTypeName</span><span class="p">()</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">","</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">getAllocTypeName</span><span class="p">()</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">">"</span><span class="p">;</span></span>
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769
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<pre style="margin: 0;">-<span id="LC769" class="line" lang="cpp"> <span class="p">}</span></span>
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770
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1039
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<pre style="margin: 0;"> <span id="LC1039" class="line" lang="cpp"></span>
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771
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1040
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<pre style="margin: 0;"> <span id="LC1040" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/**</span></span>
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772
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1041
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<pre style="margin: 0;"> <span id="LC1041" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * compute array of prefix sums in place</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -888,7 +1157,7 @@ namespace libmaus2</td>
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888
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1157
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<pre style="margin: 0;"> <span id="LC1157" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="o" style="font-weight: 600;">!</span> <span class="n" style="color: #333;">ostr</span> <span class="p">)</span></span>
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889
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1158
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<pre style="margin: 0;"> <span id="LC1158" class="line" lang="cpp"> <span class="p">{</span></span>
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890
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<td class="diff-line-num new_line" data-linenumber="1159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1159
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<pre style="margin: 0;"> <span id="LC1159" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="891" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
891
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<pre style="margin: 0;">-<span id="LC891" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Failed to serialize "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">getTypeName</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" of size "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">size</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" to file "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">filename</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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1160
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<pre style="margin: 0;">+<span id="LC1160" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Failed to serialize "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;"><span class="idiff left">AutoArrayBase</span></span><span class="o" style="font-weight: 600;"><span class="idiff"><</span></span><span class="n" style="color: #333;"><span class="idiff">value_type</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">atype</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">>::</span></span><span class="n" style="color: #333;">getTypeName</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" of size "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">size</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" to file "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">filename</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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892
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1161
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<pre style="margin: 0;"> <span id="LC1161" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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893
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1162
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<pre style="margin: 0;"> <span id="LC1162" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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894
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1163
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<pre style="margin: 0;"> <span id="LC1163" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="939" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -939,52 +1208,6 @@ namespace libmaus2</td>
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939
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1208
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<pre style="margin: 0;"> <span id="LC1208" class="line" lang="cpp"> <span class="n" style="color: #333;">decreaseTotalAllocation</span><span class="p">(</span><span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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940
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1209
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<pre style="margin: 0;"> <span id="LC1209" class="line" lang="cpp"> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">rn</span><span class="p">;</span></span>
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<td class="diff-line-num old_line" data-linenumber="941" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
941
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1210
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<pre style="margin: 0;"> <span id="LC1210" class="line" lang="cpp"> <span class="n" style="color: #333;">increaseTotalAllocation</span><span class="p">(</span><span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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942
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<pre style="margin: 0;">-<span id="LC942" class="line" lang="cpp"></span>
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943
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<pre style="margin: 0;">-<span id="LC943" class="line" lang="cpp"> <span class="c" style="color: #998; font-style: italic;">#if 0</span></span>
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944
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<pre style="margin: 0;">-<span id="LC944" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> switch ( atype )</span></span>
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945
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<pre style="margin: 0;">-<span id="LC945" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> {</span></span>
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946
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<pre style="margin: 0;">-<span id="LC946" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> case alloc_type_c:</span></span>
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947
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<pre style="margin: 0;">-<span id="LC947" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> {</span></span>
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948
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<pre style="margin: 0;">-<span id="LC948" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> N * newarray = reinterpret_cast<N *>(realloc(array, rn * sizeof(N) ));</span></span>
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949
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<pre style="margin: 0;">-<span id="LC949" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> if ( (! newarray) && (rn != 0) )</span></span>
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950
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<pre style="margin: 0;">-<span id="LC950" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> {</span></span>
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951
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<pre style="margin: 0;">-<span id="LC951" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> bool topfailed = false;</span></span>
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952
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<pre style="margin: 0;">-<span id="LC952" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> if ( system("top -b -n1") < 0 )</span></span>
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953
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<pre style="margin: 0;">-<span id="LC953" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> {</span></span>
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954
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<pre style="margin: 0;">-<span id="LC954" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> topfailed = true;</span></span>
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955
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<td class="diff-line-num new_line old" data-linenumber="1211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC955" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> }</span></span>
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956
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<pre style="margin: 0;">-<span id="LC956" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> ::libmaus2::exception::LibMausException se;</span></span>
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957
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<td class="diff-line-num new_line old" data-linenumber="1211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC957" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> se.getStream()</span></span>
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<td class="diff-line-num old old_line" data-linenumber="958" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
958
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<td class="diff-line-num new_line old" data-linenumber="1211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC958" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> << getTypeName()</span></span>
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<td class="diff-line-num old old_line" data-linenumber="959" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
959
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<td class="diff-line-num new_line old" data-linenumber="1211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC959" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> << "::resize() failed to allocate " << rn << " elements ("</span></span>
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<td class="diff-line-num old old_line" data-linenumber="960" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
960
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<td class="diff-line-num new_line old" data-linenumber="1211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC960" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> << rn*sizeof(N) << " bytes)" << "\n"</span></span>
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<td class="diff-line-num old old_line" data-linenumber="961" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
961
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<td class="diff-line-num new_line old" data-linenumber="1211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC961" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> << "current total allocation " << AutoArray_memusage</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="962" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
962
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<td class="diff-line-num new_line old" data-linenumber="1211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC962" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> << (topfailed ? " (system(top -b -n1) failed)" : "") << std::endl;</span></span>
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963
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<pre style="margin: 0;">-<span id="LC963" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> ;</span></span>
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964
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<pre style="margin: 0;">-<span id="LC964" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> se.finish();</span></span>
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965
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<pre style="margin: 0;">-<span id="LC965" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> throw se;</span></span>
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966
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<pre style="margin: 0;">-<span id="LC966" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> }</span></span>
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<td class="diff-line-num old old_line" data-linenumber="967" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
967
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<td class="diff-line-num new_line old" data-linenumber="1211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC967" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> decreaseTotalAllocation(n);</span></span>
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968
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<td class="diff-line-num new_line old" data-linenumber="1211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC968" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> n = rn;</span></span>
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969
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<td class="diff-line-num new_line old" data-linenumber="1211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC969" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> increaseTotalAllocation(n);</span></span>
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970
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<pre style="margin: 0;">-<span id="LC970" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> array = newarray;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="971" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
971
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<pre style="margin: 0;">-<span id="LC971" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> break;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="972" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
972
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<td class="diff-line-num new_line old" data-linenumber="1211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC972" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> }</span></span>
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<td class="diff-line-num old old_line" data-linenumber="973" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
973
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<td class="diff-line-num new_line old" data-linenumber="1211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC973" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> case alloc_type_cxx:</span></span>
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<td class="diff-line-num old old_line" data-linenumber="974" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
974
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<td class="diff-line-num new_line old" data-linenumber="1211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC974" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> case alloc_type_memalign_cacheline:</span></span>
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<td class="diff-line-num old old_line" data-linenumber="975" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
975
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<pre style="margin: 0;">-<span id="LC975" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> case alloc_type_memalign_pagesize:</span></span>
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<pre style="margin: 0;">-<span id="LC976" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> case alloc_type_hugepages:</span></span>
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977
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<pre style="margin: 0;">-<span id="LC977" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> case alloc_type_hugepages_memalign_cacheline:</span></span>
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978
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<pre style="margin: 0;">-<span id="LC978" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> case alloc_type_hugepages_memalign_pagesize:</span></span>
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979
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<pre style="margin: 0;">-<span id="LC979" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> {</span></span>
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980
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<pre style="margin: 0;">-<span id="LC980" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> this_type C(rn,false);</span></span>
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981
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<pre style="margin: 0;">-<span id="LC981" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> uint64_t const copy = std::min(size(),C.size());</span></span>
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982
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<pre style="margin: 0;">-<span id="LC982" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> std::copy(begin(),begin()+copy,C.begin());</span></span>
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983
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<pre style="margin: 0;">-<span id="LC983" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> *this = C;</span></span>
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984
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<pre style="margin: 0;">-<span id="LC984" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> }</span></span>
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985
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<pre style="margin: 0;">-<span id="LC985" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> break;</span></span>
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<pre style="margin: 0;">-<span id="LC986" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> }</span></span>
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987
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<pre style="margin: 0;">-<span id="LC987" class="line" lang="cpp"><span class="c" style="color: #998; font-style: italic;"> #endif</span></span>
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1211
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<pre style="margin: 0;"> <span id="LC1211" class="line" lang="cpp"> <span class="p">}</span></span>
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1212
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<pre style="margin: 0;"> <span id="LC1212" class="line" lang="cpp"></span>
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1213
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<pre style="margin: 0;"> <span id="LC1213" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/**</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -997,70 +1220,6 @@ namespace libmaus2</td>
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997
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1220
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<pre style="margin: 0;"> <span id="LC1220" class="line" lang="cpp"> <span class="p">}</span></span>
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998
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1221
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<pre style="margin: 0;"> <span id="LC1221" class="line" lang="cpp"></span>
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999
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1222
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<pre style="margin: 0;"> <span id="LC1222" class="line" lang="cpp"> <span class="nl">private:</span></span>
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1000
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<pre style="margin: 0;">-<span id="LC1000" class="line" lang="cpp"> <span class="cm" style="color: #998; font-style: italic;">/**</span></span>
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1001
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<pre style="margin: 0;">-<span id="LC1001" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> * @return size of a (level 1) cache line in bytes</span></span>
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1002
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<pre style="margin: 0;">-<span id="LC1002" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> **/</span></span>
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1003
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<pre style="margin: 0;">-<span id="LC1003" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#if defined(LIBMAUS2_HAVE_SYSCONF) && defined(_SC_LEVEL1_DCACHE_LINESIZE)</span></span>
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1004
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<pre style="margin: 0;">-<span id="LC1004" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">getCacheLineSize</span><span class="p">()</span></span>
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1005
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<pre style="margin: 0;">-<span id="LC1005" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC1006" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">sclinesize</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">posix</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">PosixFunctions</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">sysconf</span><span class="p">(</span><span class="n" style="color: #333;">_SC_LEVEL1_DCACHE_LINESIZE</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC1007" class="line" lang="cpp"></span>
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1008
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<pre style="margin: 0;">-<span id="LC1008" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">sclinesize</span> <span class="p">)</span></span>
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1009
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<pre style="margin: 0;">-<span id="LC1009" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">sclinesize</span><span class="p">;</span></span>
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1010
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<pre style="margin: 0;">-<span id="LC1010" class="line" lang="cpp"></span>
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1011
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<pre style="margin: 0;">-<span id="LC1011" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#if defined(LIBMAUS2_USE_ASSEMBLY) && defined(LIBMAUS2_HAVE_i386)</span></span>
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1012
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<pre style="margin: 0;">-<span id="LC1012" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">I386CacheLineSize</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">getCacheLineSize</span><span class="p">();</span></span>
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1013
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<pre style="margin: 0;">-<span id="LC1013" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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1014
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<pre style="margin: 0;">-<span id="LC1014" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="mi" style="color: #099;">64ull</span><span class="p">;</span></span>
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1015
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<pre style="margin: 0;">-<span id="LC1015" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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1016
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<pre style="margin: 0;">-<span id="LC1016" class="line" lang="cpp"> <span class="p">}</span></span>
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1017
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<pre style="margin: 0;">-<span id="LC1017" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#elif defined(_WIN32)</span></span>
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1018
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<pre style="margin: 0;">-<span id="LC1018" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">getCacheLineSize</span><span class="p">()</span></span>
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1019
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<pre style="margin: 0;">-<span id="LC1019" class="line" lang="cpp"> <span class="p">{</span></span>
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1020
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<pre style="margin: 0;">-<span id="LC1020" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">cachelinesize</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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1021
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<pre style="margin: 0;">-<span id="LC1021" class="line" lang="cpp"> <span class="n" style="color: #333;">DWORD</span> <span class="n" style="color: #333;">bufsize</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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1022
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<pre style="margin: 0;">-<span id="LC1022" class="line" lang="cpp"> <span class="n" style="color: #333;">GetLogicalProcessorInformation</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">bufsize</span><span class="p">);</span></span>
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1023
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<pre style="margin: 0;">-<span id="LC1023" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">uint8_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">Abuffer</span><span class="p">(</span><span class="n" style="color: #333;">bufsize</span><span class="p">);</span></span>
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1024
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<pre style="margin: 0;">-<span id="LC1024" class="line" lang="cpp"> <span class="n" style="color: #333;">SYSTEM_LOGICAL_PROCESSOR_INFORMATION</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">buffer</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">SYSTEM_LOGICAL_PROCESSOR_INFORMATION</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="n" style="color: #333;">Abuffer</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">());</span></span>
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1025
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<pre style="margin: 0;">-<span id="LC1025" class="line" lang="cpp"> <span class="n" style="color: #333;">GetLogicalProcessorInformation</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">buffer</span><span class="p">[</span><span class="mi" style="color: #099;">0</span><span class="p">],</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">bufsize</span><span class="p">);</span></span>
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1026
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<pre style="margin: 0;">-<span id="LC1026" class="line" lang="cpp"></span>
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1027
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<td class="diff-line-num new_line old" data-linenumber="1223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1027" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">!=</span> <span class="n" style="color: #333;">bufsize</span> <span class="o" style="font-weight: 600;">/</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">SYSTEM_LOGICAL_PROCESSOR_INFORMATION</span><span class="p">);</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">i</span><span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1028" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1028
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<td class="diff-line-num new_line old" data-linenumber="1223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1028" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1029" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1029
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<td class="diff-line-num new_line old" data-linenumber="1223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1029" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span><span class="n" style="color: #333;">buffer</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">Relationship</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">RelationCache</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">buffer</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">Cache</span><span class="p">.</span><span class="n" style="color: #333;">Level</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">1</span><span class="p">)</span> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1030" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1030
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<td class="diff-line-num new_line old" data-linenumber="1223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1030" class="line" lang="cpp"> <span class="n" style="color: #333;">cachelinesize</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">buffer</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">Cache</span><span class="p">.</span><span class="n" style="color: #333;">LineSize</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1031" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1031
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<td class="diff-line-num new_line old" data-linenumber="1223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1031" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1032" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1032
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<td class="diff-line-num new_line old" data-linenumber="1223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1032" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1033" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1033
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<td class="diff-line-num new_line old" data-linenumber="1223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1033" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1034" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1034
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<td class="diff-line-num new_line old" data-linenumber="1223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1034" class="line" lang="cpp"></span>
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<td class="diff-line-num old old_line" data-linenumber="1035" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1035
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<td class="diff-line-num new_line old" data-linenumber="1223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1035" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">cachelinesize</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1036" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1036
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<td class="diff-line-num new_line old" data-linenumber="1223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1036" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1037" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1037
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<td class="diff-line-num new_line old" data-linenumber="1223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1037" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#elif defined(__APPLE__)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1038" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1038
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<td class="diff-line-num new_line old" data-linenumber="1223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1038" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">getCacheLineSize</span><span class="p">()</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1039" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1039
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<td class="diff-line-num new_line old" data-linenumber="1223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1039" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1040" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1040
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<td class="diff-line-num new_line old" data-linenumber="1223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1040" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">cachelinesize</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1041" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1041
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<td class="diff-line-num new_line old" data-linenumber="1223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1041" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">size_t</span> <span class="n" style="color: #333;">cachelinesizelen</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">cachelinesize</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1042" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1042
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<td class="diff-line-num new_line old" data-linenumber="1223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1042" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#if defined(NDEBUG)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1043" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1043
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<td class="diff-line-num new_line old" data-linenumber="1223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1043" class="line" lang="cpp"> <span class="n" style="color: #333;">sysctlbyname</span><span class="p">(</span><span class="s" style="color: #d14;">"hw.cachelinesize"</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">cachelinesize</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">cachelinesizelen</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1044" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1044
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<td class="diff-line-num new_line old" data-linenumber="1223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1044" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1045" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1045
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<td class="diff-line-num new_line old" data-linenumber="1223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1045" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">sysctlretname</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">sysctlbyname</span><span class="p">(</span><span class="s" style="color: #d14;">"hw.cachelinesize"</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">cachelinesize</span><span class="p">,</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">cachelinesizelen</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span> <span class="mi" style="color: #099;">0</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1046" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1046
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<td class="diff-line-num new_line old" data-linenumber="1223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1046" class="line" lang="cpp"> <span class="n" style="color: #333;">assert</span> <span class="p">(</span> <span class="o" style="font-weight: 600;">!</span> <span class="n" style="color: #333;">sysctlretname</span> <span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1047" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1047
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<td class="diff-line-num new_line old" data-linenumber="1223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1047" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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1048
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<pre style="margin: 0;">-<span id="LC1048" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">cachelinesize</span><span class="p">;</span></span>
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1049
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<pre style="margin: 0;">-<span id="LC1049" class="line" lang="cpp"> <span class="p">}</span></span>
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1050
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<pre style="margin: 0;">-<span id="LC1050" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#elif defined(LIBMAUS2_USE_ASSEMBLY) && defined(LIBMAUS2_HAVE_i386)</span></span>
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1051
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<pre style="margin: 0;">-<span id="LC1051" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">getCacheLineSize</span><span class="p">()</span></span>
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1052
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<pre style="margin: 0;">-<span id="LC1052" class="line" lang="cpp"> <span class="p">{</span></span>
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1053
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<pre style="margin: 0;">-<span id="LC1053" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">I386CacheLineSize</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">getCacheLineSize</span><span class="p">();</span></span>
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1054
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<pre style="margin: 0;">-<span id="LC1054" class="line" lang="cpp"> <span class="p">}</span></span>
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1055
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<pre style="margin: 0;">-<span id="LC1055" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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1056
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<pre style="margin: 0;">-<span id="LC1056" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">getCacheLineSize</span><span class="p">()</span></span>
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1057
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<pre style="margin: 0;">-<span id="LC1057" class="line" lang="cpp"> <span class="p">{</span></span>
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1058
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<pre style="margin: 0;">-<span id="LC1058" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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1059
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<pre style="margin: 0;">-<span id="LC1059" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"AutoArray<>::getCacheLineSize(): cache line size detection not available."</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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1060
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<pre style="margin: 0;">-<span id="LC1060" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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1061
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<pre style="margin: 0;">-<span id="LC1061" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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1062
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<pre style="margin: 0;">-<span id="LC1062" class="line" lang="cpp"> <span class="p">}</span></span>
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1063
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<pre style="margin: 0;">-<span id="LC1063" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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1064
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1223
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<pre style="margin: 0;"> <span id="LC1223" class="line" lang="cpp"></span>
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1065
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1224
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<pre style="margin: 0;"> <span id="LC1224" class="line" lang="cpp"> <span class="nl">public:</span></span>
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1066
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1225
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<pre style="margin: 0;"> <span id="LC1225" class="line" lang="cpp"> <span class="n" style="color: #333;">N</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">take</span><span class="p">()</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1079" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1079,34 +1238,7 @@ namespace libmaus2</td>
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1079
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1238
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<pre style="margin: 0;"> <span id="LC1238" class="line" lang="cpp"> <span class="p">{</span></span>
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1080
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1239
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<pre style="margin: 0;"> <span id="LC1239" class="line" lang="cpp"> <span class="n" style="color: #333;">decreaseTotalAllocation</span><span class="p">(</span><span class="n" style="color: #333;">n</span><span class="p">);</span></span>
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1081
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1240
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<pre style="margin: 0;"> <span id="LC1240" class="line" lang="cpp"></span>
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1082
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<pre style="margin: 0;">-<span id="LC1082" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">switch</span> <span class="p">(</span> <span class="n" style="color: #333;">atype</span> <span class="p">)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1083" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1083
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<td class="diff-line-num new_line old" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1083" class="line" lang="cpp"> <span class="p">{</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1084" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1084
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<td class="diff-line-num new_line old" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1084" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_cxx</span><span class="p">:</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1085" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1085
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<td class="diff-line-num new_line old" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1085" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">delete</span> <span class="p">[]</span> <span class="n" style="color: #333;">array</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1086" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1086
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<td class="diff-line-num new_line old" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1086" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1087" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1087
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<td class="diff-line-num new_line old" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1087" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_c</span><span class="p">:</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1088" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1088
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<td class="diff-line-num new_line old" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1088" class="line" lang="cpp"> <span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">array</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1089" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1089
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<td class="diff-line-num new_line old" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1089" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1090" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1090
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<td class="diff-line-num new_line old" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1090" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_memalign_cacheline</span><span class="p">:</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1091" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1091
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<td class="diff-line-num new_line old" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1091" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#if defined(_WIN32) || defined(LIBMAUS2_HAVE_POSIX_MEMALIGN)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1092" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1092
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<td class="diff-line-num new_line old" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1092" class="line" lang="cpp"> <span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">array</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1093" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1093
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<td class="diff-line-num new_line old" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1093" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1094" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1094
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<td class="diff-line-num new_line old" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1094" class="line" lang="cpp"> <span class="n" style="color: #333;">AlignedAllocation</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">alloc_type_memalign_cacheline</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">freeAligned</span><span class="p">(</span><span class="n" style="color: #333;">array</span><span class="p">);</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1095" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1095
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<td class="diff-line-num new_line old" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1095" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1096" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1096
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<td class="diff-line-num new_line old" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1096" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1097" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1097
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<td class="diff-line-num new_line old" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1097" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_memalign_pagesize</span><span class="p">:</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1098" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1098
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<td class="diff-line-num new_line old" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1098" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#if defined(_WIN32) || defined(LIBMAUS2_HAVE_POSIX_MEMALIGN)</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1099" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1099
</td>
<td class="diff-line-num new_line old" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1099" class="line" lang="cpp"> <span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">array</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1100" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1100
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<td class="diff-line-num new_line old" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1100" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1101
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<td class="diff-line-num new_line old" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1101" class="line" lang="cpp"> <span class="n" style="color: #333;">AlignedAllocation</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">alloc_type_memalign_pagesize</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">freeAligned</span><span class="p">(</span><span class="n" style="color: #333;">array</span><span class="p">);</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1102
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<td class="diff-line-num new_line old" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
<td class="line_content old" style="padding-left: 0.5em; padding-right: 0.5em;" bgcolor="#fbe9eb">
<pre style="margin: 0;">-<span id="LC1102" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<td class="diff-line-num old old_line" data-linenumber="1103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1103
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<td class="diff-line-num new_line old" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1103" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1104
</td>
<td class="diff-line-num new_line old" data-linenumber="1241" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1104" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_hugepages</span><span class="p">:</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1105
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<pre style="margin: 0;">-<span id="LC1105" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_hugepages_memalign_cacheline</span><span class="p">:</span></span>
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1106
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<pre style="margin: 0;">-<span id="LC1106" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">alloc_type_hugepages_memalign_pagesize</span><span class="p">:</span></span>
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1107
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<pre style="margin: 0;">-<span id="LC1107" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">HugePages</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">getHugePageObject</span><span class="p">().</span><span class="n" style="color: #333;">free</span><span class="p">(</span><span class="n" style="color: #333;">array</span><span class="p">);</span></span>
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1108
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<pre style="margin: 0;">-<span id="LC1108" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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1109
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<pre style="margin: 0;">-<span id="LC1109" class="line" lang="cpp"> <span class="p">}</span></span>
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1241
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<pre style="margin: 0;">+<span id="LC1241" class="line" lang="cpp"> <span class="n" style="color: #333;">AutoArrayAllocate</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">value_type</span><span class="p">,</span><span class="n" style="color: #333;">atype</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">deallocate</span><span class="p">(</span><span class="n" style="color: #333;">array</span><span class="p">);</span></span>
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1110
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1242
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<pre style="margin: 0;"> <span id="LC1242" class="line" lang="cpp"></span>
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1111
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1243
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<pre style="margin: 0;"> <span id="LC1243" class="line" lang="cpp"> <span class="n" style="color: #333;">array</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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1112
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1244
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<pre style="margin: 0;"> <span id="LC1244" class="line" lang="cpp"> <span class="n" style="color: #333;">n</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1522" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1654" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1522,7 +1654,7 @@ namespace libmaus2</td>
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1522
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1654
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<pre style="margin: 0;"> <span id="LC1654" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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1523
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1655
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<pre style="margin: 0;"> <span id="LC1655" class="line" lang="cpp"> <span class="p">{</span></span>
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1524
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<td class="diff-line-num new_line" data-linenumber="1656" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1656
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<pre style="margin: 0;"> <span id="LC1656" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">ex</span><span class="p">;</span></span>
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1525
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<pre style="margin: 0;">-<span id="LC1525" class="line" lang="cpp"> <span class="n" style="color: #333;">ex</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"AutoArray<"</span><span class="o" style="font-weight: 600;"><<</span><span class="n" style="color: #333;">getTypeName</span><span class="p">()</span><span class="o" style="font-weight: 600;"><<</span><span class="s" style="color: #d14;">">::at("</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"): index is out of bounds for array of size "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">size</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<td class="diff-line-num new old_line" data-linenumber="1526" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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1657
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<pre style="margin: 0;">+<span id="LC1657" class="line" lang="cpp"> <span class="n" style="color: #333;">ex</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"AutoArray<"</span><span class="o" style="font-weight: 600;"><<</span><span class="idiff left"> </span><span class="n" style="color: #333;"><span class="idiff">AutoArrayBase</span></span><span class="o" style="font-weight: 600;"><span class="idiff"><</span></span><span class="n" style="color: #333;"><span class="idiff">value_type</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">atype</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">>::</span></span><span class="n" style="color: #333;">getTypeName</span><span class="p">()</span><span class="o" style="font-weight: 600;"><<</span><span class="s" style="color: #d14;">">::at("</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"): index is out of bounds for array of size "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">size</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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1526
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<td class="diff-line-num new_line" data-linenumber="1658" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1658
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<pre style="margin: 0;"> <span id="LC1658" class="line" lang="cpp"> <span class="n" style="color: #333;">ex</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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<td class="diff-line-num old_line" data-linenumber="1527" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1527
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1659
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<pre style="margin: 0;"> <span id="LC1659" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">ex</span><span class="p">;</span></span>
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<td class="diff-line-num old_line" data-linenumber="1528" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1528
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1660
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<pre style="margin: 0;"> <span id="LC1660" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1540" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1672" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1540,7 +1672,7 @@ namespace libmaus2</td>
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1540
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1672
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<pre style="margin: 0;"> <span id="LC1672" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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1541
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<td class="diff-line-num new_line" data-linenumber="1673" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1673
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<pre style="margin: 0;"> <span id="LC1673" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num old_line" data-linenumber="1542" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1542
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1674
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<pre style="margin: 0;"> <span id="LC1674" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">ex</span><span class="p">;</span></span>
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1543
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<pre style="margin: 0;">-<span id="LC1543" class="line" lang="cpp"> <span class="n" style="color: #333;">ex</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"AutoArray<"</span><span class="o" style="font-weight: 600;"><<</span><span class="n" style="color: #333;">getTypeName</span><span class="p">()</span><span class="o" style="font-weight: 600;"><<</span><span class="s" style="color: #d14;">">::at("</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"): index is out of bounds for array of size "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">size</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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1675
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<pre style="margin: 0;">+<span id="LC1675" class="line" lang="cpp"> <span class="n" style="color: #333;">ex</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"AutoArray<"</span><span class="o" style="font-weight: 600;"><<</span><span class="n" style="color: #333;"><span class="idiff left">AutoArrayBase</span></span><span class="o" style="font-weight: 600;"><span class="idiff"><</span></span><span class="n" style="color: #333;"><span class="idiff">value_type</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">atype</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">>::</span></span><span class="n" style="color: #333;">getTypeName</span><span class="p">()</span><span class="o" style="font-weight: 600;"><<</span><span class="s" style="color: #d14;">">::at("</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"): index is out of bounds for array of size "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">size</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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1544
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1676
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<pre style="margin: 0;"> <span id="LC1676" class="line" lang="cpp"> <span class="n" style="color: #333;">ex</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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1545
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1677
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<pre style="margin: 0;"> <span id="LC1677" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">ex</span><span class="p">;</span></span>
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1546
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1678
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<pre style="margin: 0;"> <span id="LC1678" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1554" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1686" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1554,7 +1686,7 @@ namespace libmaus2</td>
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1554
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1686
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<pre style="margin: 0;"> <span id="LC1686" class="line" lang="cpp"> <span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">atype</span><span class="o" style="font-weight: 600;">></span> <span class="o" style="font-weight: 600;">&</span> <span class="k" style="font-weight: 600;">operator</span><span class="o" style="font-weight: 600;">=</span><span class="p">(</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">N</span><span class="p">,</span><span class="n" style="color: #333;">atype</span><span class="o" style="font-weight: 600;">></span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">o</span><span class="p">)</span></span>
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1555
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1687
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<pre style="margin: 0;"> <span id="LC1687" class="line" lang="cpp"> <span class="p">{</span></span>
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1556
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1688
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<pre style="margin: 0;"> <span id="LC1688" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#if defined(AUTOARRAY_DEBUG)</span></span>
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1557
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<pre style="margin: 0;">-<span id="LC1557" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="k" style="font-weight: 600;">this</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">","</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">getTypeName</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"::operator=("</span> <span class="o" style="font-weight: 600;"><<</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">o</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">")"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;;</span></span>
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1689
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<pre style="margin: 0;">+<span id="LC1689" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="k" style="font-weight: 600;">this</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">","</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;"><span class="idiff left">AutoArrayBase</span></span><span class="o" style="font-weight: 600;"><span class="idiff"><</span></span><span class="n" style="color: #333;"><span class="idiff">value_type</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">atype</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">>::</span></span><span class="n" style="color: #333;">getTypeName</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"::operator=("</span> <span class="o" style="font-weight: 600;"><<</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">o</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">")"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;;</span></span>
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1558
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1690
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<pre style="margin: 0;"> <span id="LC1690" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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1559
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1691
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<pre style="margin: 0;"> <span id="LC1691" class="line" lang="cpp"></span>
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1560
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1692
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<pre style="margin: 0;"> <span id="LC1692" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="k" style="font-weight: 600;">this</span> <span class="o" style="font-weight: 600;">!=</span> <span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">o</span> <span class="p">)</span></span>
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<li id="26b31d14d5585f805b9431d7a395c14aad970d5b">
<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#26b31d14d5585f805b9431d7a395c14aad970d5b"><strong>src/libmaus2/bambam/ReadEndsBlockIndexSet.hpp</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -33,12 +33,8 @@ namespace libmaus2</td>
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33
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33
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="cpp"><span class="p">{</span></span>
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34
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34
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">namespace</span> <span class="n" style="color: #333;">bambam</span></span>
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35
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35
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">ReadEndsBlockIndexSet</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">ReadEndsBlockIndexSet<span class="idiff left right">Base</span></span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">ReadEndsBlockIndexSet</span> <span class="n" style="color: #333;">this_type</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">this_type</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">type</span> <span class="n" style="color: #333;">unique_ptr_type</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">shared_ptr</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">this_type</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">type</span> <span class="n" style="color: #333;">shared_ptr_type</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">index</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ExternalMemoryIndexDecoder</span><span class="o" style="font-weight: 600;"><</span></span>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bambam</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ReadEndsBase</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC40" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bambam</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ReadEndsContainerBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">baseIndexShift</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -54,55 +50,124 @@ namespace libmaus2</td>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">numblocks</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC57" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">ReadEndsBlockDecoderBaseCollectionInfoBase</span><span class="o" style="font-weight: 600;">></span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">info</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">numblocks</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">O</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">indexstreams</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC61" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">index_decoder_pointer_type</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">indexes</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC63" class="line" lang="cpp"> <span class="n" style="color: #333;">ReadEndsBlockIndexSet</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">ReadEndsBlockDecoderBaseCollectionInfoBase</span><span class="o" style="font-weight: 600;">></span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">rinfo</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC64" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">info</span><span class="p">(</span><span class="n" style="color: #333;">rinfo</span><span class="p">),</span> <span class="n" style="color: #333;">numblocks</span><span class="p">(</span><span class="n" style="color: #333;">computeNumBlocks</span><span class="p">(</span><span class="n" style="color: #333;">rinfo</span><span class="p">)),</span> <span class="n" style="color: #333;">O</span><span class="p">(</span><span class="n" style="color: #333;">rinfo</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">()),</span> <span class="n" style="color: #333;">indexstreams</span><span class="p">(</span><span class="n" style="color: #333;">rinfo</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">()),</span> <span class="n" style="color: #333;">indexes</span><span class="p">(</span><span class="n" style="color: #333;">numblocks</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">computeO</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">ReadEndsBlockDecoderBaseCollectionInfoBase</span><span class="o" style="font-weight: 600;">></span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">info</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">O</span><span class="p">(</span><span class="n" style="color: #333;">info</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">());</span></span>
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">1</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">O</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">i</span> <span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC67" class="line" lang="cpp"> <span class="n" style="color: #333;">O</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">O</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;"><span class="idiff left right">r</span>info</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">].</span><span class="n" style="color: #333;">indexoffset</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="cpp"> <span class="n" style="color: #333;">O</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">O</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">info</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">].</span><span class="n" style="color: #333;">indexoffset</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span></span>
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">rinfo</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">i</span> <span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">O</span><span class="p">;</span></span>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="cpp"> <span class="p">}</span></span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="cpp"></span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">openIndexStreams</span><span class="p">(</span></span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">ReadEndsBlockDecoderBaseCollectionInfoBase</span><span class="o" style="font-weight: 600;">></span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">info</span></span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="cpp"> <span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">indexstreams</span><span class="p">(</span></span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span><span class="o" style="font-weight: 600;">></span><span class="p">(</span><span class="n" style="color: #333;">info</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">())</span></span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="cpp"> <span class="p">);</span></span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="cpp"></span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">info</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">i</span> <span class="p">)</span></span>
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70
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72
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="cpp"> <span class="p">{</span></span>
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71
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73
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">tptr</span><span class="p">(</span></span>
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72
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left right">r</span>info</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">indexfilename</span><span class="p">)</span></span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="p">(</span><span class="n" style="color: #333;">info</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">indexfilename</span><span class="p">)</span></span>
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73
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75
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="cpp"> <span class="p">);</span></span>
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74
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="cpp"> <span class="n" style="color: #333;">indexstreams</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">UNIQUE_PTR_MOVE</span><span class="p">(</span><span class="n" style="color: #333;">tptr</span><span class="p">);</span></span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="cpp"> <span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">indexstreams</span><span class="p">)[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">UNIQUE_PTR_MOVE</span><span class="p">(</span><span class="n" style="color: #333;">tptr</span><span class="p">);</span></span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="cpp"> <span class="p">}</span></span>
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78
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="cpp"></span>
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76
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<pre style="margin: 0;">-<span id="LC76" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">rinfo</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">indexoffset</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">j</span> <span class="p">)</span></span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">indexstreams</span><span class="p">;</span></span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="cpp"> <span class="p">}</span></span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="cpp"></span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">getBaseBlockSize</span><span class="p">()</span></span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bambam</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ReadEndsContainerBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">baseIndexStep</span><span class="p">;</span></span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="cpp"> <span class="p">}</span></span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="cpp"></span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">index_decoder_pointer_type</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">openIndexes</span><span class="p">(</span></span>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">ReadEndsBlockDecoderBaseCollectionInfoBase</span><span class="o" style="font-weight: 600;">></span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">info</span><span class="p">,</span></span>
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89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">indexstreams</span><span class="p">,</span></span>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">numblocks</span><span class="p">,</span></span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="o" style="font-weight: 600;">></span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">O</span></span>
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92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="cpp"> <span class="p">)</span></span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="cpp"> <span class="p">{</span></span>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">index_decoder_pointer_type</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">indexes</span><span class="p">(</span></span>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">index_decoder_pointer_type</span><span class="o" style="font-weight: 600;">></span><span class="p">(</span><span class="n" style="color: #333;">numblocks</span><span class="p">)</span></span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="cpp"> <span class="p">);</span></span>
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97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="cpp"></span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">indexstreams</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">i</span> <span class="p">)</span></span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="cpp"> <span class="p">{</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">istream</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">str</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">*</span><span class="p">((</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">indexstreams</span><span class="p">)[</span><span class="n" style="color: #333;">i</span><span class="p">]);</span></span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="cpp"></span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">info</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">indexoffset</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">j</span> <span class="p">)</span></span>
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77
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103
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left">indexstreams</span></span><span class="p"><span class="idiff">[</span></span><span class="n" style="color: #333;"><span class="idiff">i</span></span><span class="p"><span class="idiff">]</span></span><span class="o" style="font-weight: 600;"><span class="idiff right">-></span></span><span class="n" style="color: #333;">clear</span><span class="p">();</span></span>
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79
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left">indexstreams</span></span><span class="p"><span class="idiff">[</span></span><span class="n" style="color: #333;"><span class="idiff">i</span></span><span class="p"><span class="idiff">]</span></span><span class="o" style="font-weight: 600;"><span class="idiff">-></span></span><span class="n" style="color: #333;"><span class="idiff">seekg</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff right">r</span>info</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">indexoffset</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">]);</span></span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left">str</span></span><span class="p"><span class="idiff right">.</span></span><span class="n" style="color: #333;">clear</span><span class="p">();</span></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left">str</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff">seekg</span></span><span class="p"><span class="idiff right">(</span></span><span class="n" style="color: #333;">info</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">indexoffset</span><span class="p">[</span><span class="n" style="color: #333;">j</span><span class="p">]);</span></span>
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80
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106
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<pre style="margin: 0;"> <span id="LC106" class="line" lang="cpp"> <span class="n" style="color: #333;">index_decoder_pointer_type</span> <span class="n" style="color: #333;">iptr</span><span class="p">(</span></span>
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<pre style="margin: 0;">-<span id="LC81" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">index_decoder_type</span><span class="p">(</span><span class="o" style="font-weight: 600;"><span class="idiff left">*</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">indexstreams</span></span><span class="p"><span class="idiff">[</span></span><span class="n" style="color: #333;"><span class="idiff">i</span></span><span class="p"><span class="idiff right">])</span>)</span></span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">index_decoder_type</span><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left right">str</span></span><span class="p">)</span></span>
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82
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108
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="cpp"> <span class="p">);</span></span>
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83
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left right">indexes</span></span><span class="p">[</span><span class="n" style="color: #333;">O</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">j</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">UNIQUE_PTR_MOVE</span><span class="p">(</span><span class="n" style="color: #333;">iptr</span><span class="p">);</span></span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="cpp"> <span class="p"><span class="idiff left">(</span></span><span class="o" style="font-weight: 600;"><span class="idiff">*</span></span><span class="n" style="color: #333;"><span class="idiff">indexes</span></span><span class="p"><span class="idiff right">)</span>[</span><span class="n" style="color: #333;">O</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">j</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">UNIQUE_PTR_MOVE</span><span class="p">(</span><span class="n" style="color: #333;">iptr</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC110" class="line" lang="cpp"> <span class="p">}</span></span>
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111
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="cpp"> <span class="p">}</span></span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="cpp"></span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">indexes</span><span class="p">;</span></span>
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86
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114
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="cpp"> <span class="p">}</span></span>
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115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="cpp"> <span class="p">};</span></span>
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87
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116
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="cpp"></span>
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88
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">size</span><span class="p">()</span> <span class="k" style="font-weight: 600;">const</span></span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">ReadEndsBlockIndexSetData</span> <span class="o" style="font-weight: 600;">:</span> <span class="k" style="font-weight: 600;">public</span> <span class="n" style="color: #333;">ReadEndsBlockIndexSetBase</span></span>
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118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">ReadEndsBlockIndexSetData</span> <span class="n" style="color: #333;">this_type</span><span class="p">;</span></span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">this_type</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">type</span> <span class="n" style="color: #333;">unique_ptr_type</span><span class="p">;</span></span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">shared_ptr</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">this_type</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">type</span> <span class="n" style="color: #333;">shared_ptr_type</span><span class="p">;</span></span>
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122
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="cpp"></span>
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123
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<pre style="margin: 0;">+<span id="LC123" class="line" lang="cpp"> <span class="nl">private:</span></span>
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124
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="cpp"> <span class="n" style="color: #333;">index_decoder_type</span> <span class="o" style="font-weight: 600;">&</span> <span class="k" style="font-weight: 600;">operator</span><span class="p">[](</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">i</span><span class="p">)</span></span>
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89
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125
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="cpp"> <span class="p">{</span></span>
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90
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<pre style="margin: 0;">-<span id="LC90" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;"><span class="idiff left right">numblocks</span></span><span class="p">;</span></span>
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126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="o" style="font-weight: 600;"><span class="idiff left">*</span></span><span class="p"><span class="idiff">((</span></span><span class="o" style="font-weight: 600;"><span class="idiff">*</span></span><span class="n" style="color: #333;"><span class="idiff">indexes</span></span><span class="p"><span class="idiff">)[</span></span><span class="n" style="color: #333;"><span class="idiff">i</span></span><span class="p"><span class="idiff right">])</span>;</span></span>
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91
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127
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="cpp"> <span class="p">}</span></span>
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92
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128
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<pre style="margin: 0;"> <span id="LC128" class="line" lang="cpp"></span>
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93
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="cpp"> <span class="n" style="color: #333;">index_decoder_type</span> <span class="o" style="font-weight: 600;">&</span> <span class="k" style="font-weight: 600;">operator</span><span class="p">[](</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">i</span><span class="p">)</span></span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="cpp"> <span class="nl">public:</span></span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">ReadEndsBlockDecoderBaseCollectionInfoBase</span><span class="o" style="font-weight: 600;">></span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">info</span><span class="p">;</span></span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">numblocks</span><span class="p">;</span></span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="o" style="font-weight: 600;">></span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">O</span><span class="p">;</span></span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="cpp"></span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="cpp"> <span class="nl">private:</span></span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">indexstreams</span><span class="p">;</span></span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">index_decoder_pointer_type</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">indexes</span><span class="p">;</span></span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StdMutex</span> <span class="n" style="color: #333;">mutex</span><span class="p">;</span></span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="cpp"> <span class="nl">public:</span></span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="cpp"> <span class="n" style="color: #333;">ReadEndsBlockIndexSetData</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">vector</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">ReadEndsBlockDecoderBaseCollectionInfoBase</span><span class="o" style="font-weight: 600;">></span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">rinfo</span><span class="p">)</span></span>
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<td class="diff-line-num new new_line" data-linenumber="141" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">info</span><span class="p">(</span><span class="n" style="color: #333;">rinfo</span><span class="p">),</span> <span class="n" style="color: #333;">numblocks</span><span class="p">(</span><span class="n" style="color: #333;">computeNumBlocks</span><span class="p">(</span><span class="n" style="color: #333;">rinfo</span><span class="p">)),</span> <span class="n" style="color: #333;">O</span><span class="p">(</span><span class="n" style="color: #333;">computeO</span><span class="p">(</span><span class="n" style="color: #333;">rinfo</span><span class="p">)),</span> <span class="n" style="color: #333;">indexstreams</span><span class="p">(</span><span class="n" style="color: #333;">openIndexStreams</span><span class="p">(</span><span class="n" style="color: #333;">rinfo</span><span class="p">)),</span> <span class="n" style="color: #333;">indexes</span><span class="p">(</span><span class="n" style="color: #333;">openIndexes</span><span class="p">(</span><span class="n" style="color: #333;">rinfo</span><span class="p">,</span><span class="n" style="color: #333;">indexstreams</span><span class="p">,</span><span class="n" style="color: #333;">numblocks</span><span class="p">,</span><span class="n" style="color: #333;">O</span><span class="p">)),</span> <span class="n" style="color: #333;">mutex</span><span class="p">()</span></span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="cpp"> <span class="p">{</span></span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="cpp"> <span class="p">}</span></span>
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144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="cpp"></span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">size</span><span class="p">()</span> <span class="k" style="font-weight: 600;">const</span></span>
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146
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="cpp"> <span class="p">{</span></span>
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95
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<pre style="margin: 0;">-<span id="LC95" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="o" style="font-weight: 600;"><span class="idiff left">*</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">indexes</span></span><span class="p"><span class="idiff">[</span></span><span class="n" style="color: #333;"><span class="idiff">i</span></span><span class="p"><span class="idiff right">])</span>;</span></span>
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147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;"><span class="idiff left right">numblocks</span></span><span class="p">;</span></span>
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148
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<pre style="margin: 0;"> <span id="LC148" class="line" lang="cpp"> <span class="p">}</span></span>
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149
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="cpp"></span>
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150
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">pair</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="p">,</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">getOffset</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">block</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">subblock</span><span class="p">)</span></span>
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99
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151
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC100" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">this</span><span class="p">)[</span><span class="n" style="color: #333;">block</span><span class="p">][</span><span class="n" style="color: #333;">subblock</span><span class="p">];</span></span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">pair</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="p">,</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">P</span><span class="p">;</span></span>
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153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="cpp"> <span class="p">{</span></span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ScopeStdMutex</span> <span class="n" style="color: #333;">smutex</span><span class="p">(</span><span class="n" style="color: #333;">mutex</span><span class="p">);</span></span>
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155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="cpp"> <span class="n" style="color: #333;">P</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">this</span><span class="p">)[</span><span class="n" style="color: #333;">block</span><span class="p">][</span><span class="n" style="color: #333;">subblock</span><span class="p">];</span></span>
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">P</span><span class="p">;</span></span>
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101
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158
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="cpp"> <span class="p">}</span></span>
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159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="cpp"> <span class="p">};</span></span>
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102
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160
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="cpp"></span>
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103
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<pre style="margin: 0;">-<span id="LC103" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">getBaseBlockSize</span><span class="p">()</span></span>
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161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">ReadEndsBlockIndexSet</span> <span class="o" style="font-weight: 600;">:</span> <span class="k" style="font-weight: 600;">public</span> <span class="n" style="color: #333;">ReadEndsBlockIndexSetBase</span></span>
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162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="cpp"> <span class="p">{</span></span>
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163
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">ReadEndsBlockIndexSet</span> <span class="n" style="color: #333;">this_type</span><span class="p">;</span></span>
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164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">this_type</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">type</span> <span class="n" style="color: #333;">unique_ptr_type</span><span class="p">;</span></span>
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165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">shared_ptr</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">this_type</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">type</span> <span class="n" style="color: #333;">shared_ptr_type</span><span class="p">;</span></span>
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166
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="cpp"></span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="cpp"> <span class="n" style="color: #333;">ReadEndsBlockIndexSetData</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">data</span><span class="p">;</span></span>
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168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="cpp"></span>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="cpp"> <span class="n" style="color: #333;">ReadEndsBlockIndexSet</span><span class="p">(</span><span class="n" style="color: #333;">ReadEndsBlockIndexSetData</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">rdata</span><span class="p">)</span> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">data</span><span class="p">(</span><span class="n" style="color: #333;">rdata</span><span class="p">)</span></span>
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104
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170
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<pre style="margin: 0;"> <span id="LC170" class="line" lang="cpp"> <span class="p">{</span></span>
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105
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<pre style="margin: 0;">-<span id="LC105" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bambam</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ReadEndsContainerBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">baseIndexStep</span><span class="p">;</span></span>
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106
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171
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="cpp"> <span class="p">}</span></span>
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107
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172
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="cpp"></span>
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108
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173
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<pre style="margin: 0;"> <span id="LC173" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">pair</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="p">,</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">merge</span><span class="p">(</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="184" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -119,29 +184,29 @@ namespace libmaus2</td>
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119
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184
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="cpp"> <span class="n" style="color: #333;">exp</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">V</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">second</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">V</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">first</span><span class="p">;</span></span>
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120
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="cpp"> <span class="p">}</span></span>
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121
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186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC122" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">datastreams</span><span class="p">(</span><span class="n" style="color: #333;">info</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">());</span></span>
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123
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<pre style="margin: 0;">-<span id="LC123" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">lz</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SnappyInputStream</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">zdatastreams</span><span class="p">(</span><span class="n" style="color: #333;">size</span><span class="p">());</span></span>
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187
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<pre style="margin: 0;">+<span id="LC187" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">datastreams</span><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">data</span></span><span class="p"><span class="idiff right">.</span></span><span class="n" style="color: #333;">info</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">());</span></span>
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188
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">lz</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SnappyInputStream</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">zdatastreams</span><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">data</span></span><span class="p"><span class="idiff right">.</span></span><span class="n" style="color: #333;">size</span><span class="p">());</span></span>
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124
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189
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<pre style="margin: 0;"> <span id="LC189" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bambam</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ReadEnds</span> <span class="n" style="color: #333;">R</span><span class="p">;</span></span>
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125
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190
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="cpp"></span>
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126
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<pre style="margin: 0;">-<span id="LC126" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">info</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">i</span> <span class="p">)</span></span>
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191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;"><span class="idiff left">data</span></span><span class="p"><span class="idiff right">.</span></span><span class="n" style="color: #333;">info</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">i</span> <span class="p">)</span></span>
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127
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192
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="cpp"> <span class="p">{</span></span>
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128
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193
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<pre style="margin: 0;"> <span id="LC193" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// open data stream</span></span>
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129
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194
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<pre style="margin: 0;"> <span id="LC194" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">tptr</span><span class="p">(</span></span>
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130
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<pre style="margin: 0;">-<span id="LC130" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="p">(</span><span class="n" style="color: #333;">info</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">datafilename</span><span class="p">)</span></span>
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195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">data</span></span><span class="p"><span class="idiff right">.</span></span><span class="n" style="color: #333;">info</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">datafilename</span><span class="p">)</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="131" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
131
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196
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<pre style="margin: 0;"> <span id="LC196" class="line" lang="cpp"> <span class="p">);</span></span>
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132
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<td class="diff-line-num new_line" data-linenumber="197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
197
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<pre style="margin: 0;"> <span id="LC197" class="line" lang="cpp"> <span class="n" style="color: #333;">datastreams</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">UNIQUE_PTR_MOVE</span><span class="p">(</span><span class="n" style="color: #333;">tptr</span><span class="p">);</span></span>
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133
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198
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<pre style="margin: 0;"> <span id="LC198" class="line" lang="cpp"></span>
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134
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199
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<pre style="margin: 0;"> <span id="LC199" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// set up uncompressors</span></span>
</pre>
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135
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<pre style="margin: 0;">-<span id="LC135" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">info</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">indexoffset</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">j</span> <span class="p">)</span></span>
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200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;"><span class="idiff left">data</span></span><span class="p"><span class="idiff right">.</span></span><span class="n" style="color: #333;">info</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">indexoffset</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">j</span> <span class="p">)</span></span>
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201
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<pre style="margin: 0;"> <span id="LC201" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC137" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">blockid</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">O</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">j</span><span class="p">;</span></span>
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202
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">blockid</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left">data</span></span><span class="p"><span class="idiff right">.</span></span><span class="n" style="color: #333;">O</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">j</span><span class="p">;</span></span>
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138
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203
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">vlow</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">V</span><span class="p">[</span><span class="n" style="color: #333;">blockid</span><span class="p">].</span><span class="n" style="color: #333;">first</span><span class="p">;</span></span>
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139
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204
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">vhigh</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">V</span><span class="p">[</span><span class="n" style="color: #333;">blockid</span><span class="p">].</span><span class="n" style="color: #333;">second</span><span class="p">;</span></span>
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205
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<pre style="margin: 0;"> <span id="LC205" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">subblockid</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vlow</span> <span class="o" style="font-weight: 600;">/</span> <span class="n" style="color: #333;">getBaseBlockSize</span><span class="p">();</span></span>
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141
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206
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<pre style="margin: 0;"> <span id="LC206" class="line" lang="cpp"></span>
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142
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207
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<pre style="margin: 0;"> <span id="LC207" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">vlow</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">vhigh</span> <span class="p">)</span></span>
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143
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208
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<pre style="margin: 0;"> <span id="LC208" class="line" lang="cpp"> <span class="p">{</span></span>
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144
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<pre style="margin: 0;">-<span id="LC144" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">pair</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="p">,</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="o" style="font-weight: 600;">></span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">zoffset</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">getOffset</span><span class="p">(</span><span class="n" style="color: #333;">blockid</span><span class="p">,</span><span class="n" style="color: #333;">subblockid</span><span class="p">);</span></span>
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209
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">pair</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="p">,</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="o" style="font-weight: 600;">></span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">zoffset</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left">data</span></span><span class="p"><span class="idiff right">.</span></span><span class="n" style="color: #333;">getOffset</span><span class="p">(</span><span class="n" style="color: #333;">blockid</span><span class="p">,</span><span class="n" style="color: #333;">subblockid</span><span class="p">);</span></span>
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145
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210
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<pre style="margin: 0;"> <span id="LC210" class="line" lang="cpp"></span>
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146
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211
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<pre style="margin: 0;"> <span id="LC211" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">lz</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SnappyInputStream</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">zptr</span><span class="p">(</span></span>
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147
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212
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<pre style="margin: 0;"> <span id="LC212" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">lz</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SnappyInputStream</span><span class="p">(</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="299" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -234,29 +299,29 @@ namespace libmaus2</td>
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234
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299
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<pre style="margin: 0;"> <span id="LC299" class="line" lang="cpp"> <span class="n" style="color: #333;">exp</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">V</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">second</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">V</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">first</span><span class="p">;</span></span>
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235
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300
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<pre style="margin: 0;"> <span id="LC300" class="line" lang="cpp"> <span class="p">}</span></span>
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301
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<pre style="margin: 0;"> <span id="LC301" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC237" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">datastreams</span><span class="p">(</span><span class="n" style="color: #333;">info</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">());</span></span>
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<pre style="margin: 0;">-<span id="LC238" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">lz</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SnappyInputStream</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">zdatastreams</span><span class="p">(</span><span class="n" style="color: #333;">size</span><span class="p">());</span></span>
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302
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<pre style="margin: 0;">+<span id="LC302" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">datastreams</span><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">data</span></span><span class="p"><span class="idiff right">.</span></span><span class="n" style="color: #333;">info</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">());</span></span>
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303
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<pre style="margin: 0;">+<span id="LC303" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">lz</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SnappyInputStream</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">zdatastreams</span><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">data</span></span><span class="p"><span class="idiff right">.</span></span><span class="n" style="color: #333;">size</span><span class="p">());</span></span>
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239
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304
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<pre style="margin: 0;"> <span id="LC304" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bambam</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ReadEnds</span> <span class="n" style="color: #333;">R</span><span class="p">;</span></span>
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240
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305
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<pre style="margin: 0;"> <span id="LC305" class="line" lang="cpp"></span>
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241
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<pre style="margin: 0;">-<span id="LC241" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">info</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">i</span> <span class="p">)</span></span>
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306
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<pre style="margin: 0;">+<span id="LC306" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;"><span class="idiff left">data</span></span><span class="p"><span class="idiff right">.</span></span><span class="n" style="color: #333;">info</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">i</span> <span class="p">)</span></span>
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242
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<pre style="margin: 0;"> <span id="LC307" class="line" lang="cpp"> <span class="p">{</span></span>
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243
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<pre style="margin: 0;"> <span id="LC308" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// open data stream</span></span>
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<pre style="margin: 0;"> <span id="LC309" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">tptr</span><span class="p">(</span></span>
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<pre style="margin: 0;">-<span id="LC245" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="p">(</span><span class="n" style="color: #333;">info</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">datafilename</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC310" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">data</span></span><span class="p"><span class="idiff right">.</span></span><span class="n" style="color: #333;">info</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">datafilename</span><span class="p">)</span></span>
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246
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<td class="diff-line-num new_line" data-linenumber="311" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC311" class="line" lang="cpp"> <span class="p">);</span></span>
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247
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<td class="diff-line-num new_line" data-linenumber="312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC312" class="line" lang="cpp"> <span class="n" style="color: #333;">datastreams</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">UNIQUE_PTR_MOVE</span><span class="p">(</span><span class="n" style="color: #333;">tptr</span><span class="p">);</span></span>
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248
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<pre style="margin: 0;"> <span id="LC313" class="line" lang="cpp"></span>
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249
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<pre style="margin: 0;"> <span id="LC314" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// set up uncompressors</span></span>
</pre>
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250
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<pre style="margin: 0;">-<span id="LC250" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">info</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">indexoffset</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">j</span> <span class="p">)</span></span>
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315
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<pre style="margin: 0;">+<span id="LC315" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;"><span class="idiff left">data</span></span><span class="p"><span class="idiff right">.</span></span><span class="n" style="color: #333;">info</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">indexoffset</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">j</span> <span class="p">)</span></span>
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251
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316
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<pre style="margin: 0;"> <span id="LC316" class="line" lang="cpp"> <span class="p">{</span></span>
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252
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<pre style="margin: 0;">-<span id="LC252" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">blockid</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">O</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">j</span><span class="p">;</span></span>
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317
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<pre style="margin: 0;">+<span id="LC317" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">blockid</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left">data</span></span><span class="p"><span class="idiff right">.</span></span><span class="n" style="color: #333;">O</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">j</span><span class="p">;</span></span>
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253
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318
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<pre style="margin: 0;"> <span id="LC318" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">vlow</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">V</span><span class="p">[</span><span class="n" style="color: #333;">blockid</span><span class="p">].</span><span class="n" style="color: #333;">first</span><span class="p">;</span></span>
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254
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319
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<pre style="margin: 0;"> <span id="LC319" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">vhigh</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">V</span><span class="p">[</span><span class="n" style="color: #333;">blockid</span><span class="p">].</span><span class="n" style="color: #333;">second</span><span class="p">;</span></span>
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255
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320
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<pre style="margin: 0;"> <span id="LC320" class="line" lang="cpp"></span>
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256
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321
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<pre style="margin: 0;"> <span id="LC321" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">vlow</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">vhigh</span> <span class="p">)</span></span>
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257
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322
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<pre style="margin: 0;"> <span id="LC322" class="line" lang="cpp"> <span class="p">{</span></span>
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258
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323
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<pre style="margin: 0;"> <span id="LC323" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">subblockid</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vlow</span> <span class="o" style="font-weight: 600;">/</span> <span class="n" style="color: #333;">getBaseBlockSize</span><span class="p">();</span></span>
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259
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<pre style="margin: 0;">-<span id="LC259" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">pair</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="p">,</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="o" style="font-weight: 600;">></span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">zoffset</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">getOffset</span><span class="p">(</span><span class="n" style="color: #333;">blockid</span><span class="p">,</span><span class="n" style="color: #333;">subblockid</span><span class="p">);</span></span>
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324
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<pre style="margin: 0;">+<span id="LC324" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">pair</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="p">,</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="o" style="font-weight: 600;">></span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">zoffset</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left">data</span></span><span class="p"><span class="idiff right">.</span></span><span class="n" style="color: #333;">getOffset</span><span class="p">(</span><span class="n" style="color: #333;">blockid</span><span class="p">,</span><span class="n" style="color: #333;">subblockid</span><span class="p">);</span></span>
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260
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325
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<pre style="margin: 0;"> <span id="LC325" class="line" lang="cpp"></span>
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261
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326
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<pre style="margin: 0;"> <span id="LC326" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">lz</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SnappyInputStream</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">zptr</span><span class="p">(</span></span>
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262
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327
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<pre style="margin: 0;"> <span id="LC327" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">lz</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SnappyInputStream</span><span class="p">(</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="367" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="432" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -367,29 +432,29 @@ namespace libmaus2</td>
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367
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432
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<pre style="margin: 0;"> <span id="LC432" class="line" lang="cpp"> <span class="n" style="color: #333;">exp</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">V</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">second</span><span class="o" style="font-weight: 600;">-</span><span class="n" style="color: #333;">V</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">first</span><span class="p">;</span></span>
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368
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433
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<pre style="margin: 0;"> <span id="LC433" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC434" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC370" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">datastreams</span><span class="p">(</span><span class="n" style="color: #333;">info</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">());</span></span>
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<pre style="margin: 0;">-<span id="LC371" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">lz</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SnappyInputStream</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">zdatastreams</span><span class="p">(</span><span class="n" style="color: #333;">size</span><span class="p">());</span></span>
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435
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<pre style="margin: 0;">+<span id="LC435" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">datastreams</span><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">data</span></span><span class="p"><span class="idiff right">.</span></span><span class="n" style="color: #333;">info</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">());</span></span>
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<pre style="margin: 0;">+<span id="LC436" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">autoarray</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">AutoArray</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">lz</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SnappyInputStream</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span><span class="o" style="font-weight: 600;">></span> <span class="n" style="color: #333;">zdatastreams</span><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">data</span></span><span class="p"><span class="idiff right">.</span></span><span class="n" style="color: #333;">size</span><span class="p">());</span></span>
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<pre style="margin: 0;"> <span id="LC437" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bambam</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ReadEnds</span> <span class="n" style="color: #333;">R</span><span class="p">;</span></span>
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373
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438
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<pre style="margin: 0;"> <span id="LC438" class="line" lang="cpp"></span>
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374
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<pre style="margin: 0;">-<span id="LC374" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">info</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">i</span> <span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC439" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;"><span class="idiff left">data</span></span><span class="p"><span class="idiff right">.</span></span><span class="n" style="color: #333;">info</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">i</span> <span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC440" class="line" lang="cpp"> <span class="p">{</span></span>
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376
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<pre style="margin: 0;"> <span id="LC441" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// open data stream</span></span>
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377
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<pre style="margin: 0;"> <span id="LC442" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">tptr</span><span class="p">(</span></span>
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378
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<pre style="margin: 0;">-<span id="LC378" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="p">(</span><span class="n" style="color: #333;">info</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">datafilename</span><span class="p">)</span></span>
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443
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<pre style="margin: 0;">+<span id="LC443" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">InputStreamInstance</span><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left">data</span></span><span class="p"><span class="idiff right">.</span></span><span class="n" style="color: #333;">info</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">datafilename</span><span class="p">)</span></span>
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379
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444
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<pre style="margin: 0;"> <span id="LC444" class="line" lang="cpp"> <span class="p">);</span></span>
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380
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445
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<pre style="margin: 0;"> <span id="LC445" class="line" lang="cpp"> <span class="n" style="color: #333;">datastreams</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">UNIQUE_PTR_MOVE</span><span class="p">(</span><span class="n" style="color: #333;">tptr</span><span class="p">);</span></span>
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381
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446
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<pre style="margin: 0;"> <span id="LC446" class="line" lang="cpp"></span>
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382
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447
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<pre style="margin: 0;"> <span id="LC447" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// set up uncompressors</span></span>
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<pre style="margin: 0;">-<span id="LC383" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">info</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">indexoffset</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">j</span> <span class="p">)</span></span>
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448
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<pre style="margin: 0;">+<span id="LC448" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">j</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;"><span class="idiff left">data</span></span><span class="p"><span class="idiff right">.</span></span><span class="n" style="color: #333;">info</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">].</span><span class="n" style="color: #333;">indexoffset</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">j</span> <span class="p">)</span></span>
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449
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<pre style="margin: 0;"> <span id="LC449" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC385" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">blockid</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">O</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">j</span><span class="p">;</span></span>
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450
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<pre style="margin: 0;">+<span id="LC450" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">blockid</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left">data</span></span><span class="p"><span class="idiff right">.</span></span><span class="n" style="color: #333;">O</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">j</span><span class="p">;</span></span>
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386
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451
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<pre style="margin: 0;"> <span id="LC451" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">vlow</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">V</span><span class="p">[</span><span class="n" style="color: #333;">blockid</span><span class="p">].</span><span class="n" style="color: #333;">first</span><span class="p">;</span></span>
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387
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452
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<pre style="margin: 0;"> <span id="LC452" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">vhigh</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">V</span><span class="p">[</span><span class="n" style="color: #333;">blockid</span><span class="p">].</span><span class="n" style="color: #333;">second</span><span class="p">;</span></span>
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388
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453
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<pre style="margin: 0;"> <span id="LC453" class="line" lang="cpp"></span>
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389
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454
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<pre style="margin: 0;"> <span id="LC454" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">vlow</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">vhigh</span> <span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC455" class="line" lang="cpp"> <span class="p">{</span></span>
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391
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456
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<pre style="margin: 0;"> <span id="LC456" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">subblockid</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">vlow</span> <span class="o" style="font-weight: 600;">/</span> <span class="n" style="color: #333;">getBaseBlockSize</span><span class="p">();</span></span>
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392
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<pre style="margin: 0;">-<span id="LC392" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">pair</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="p">,</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="o" style="font-weight: 600;">></span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">zoffset</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">getOffset</span><span class="p">(</span><span class="n" style="color: #333;">blockid</span><span class="p">,</span><span class="n" style="color: #333;">subblockid</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC457" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">pair</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="p">,</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="o" style="font-weight: 600;">></span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">zoffset</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;"><span class="idiff left">data</span></span><span class="p"><span class="idiff right">.</span></span><span class="n" style="color: #333;">getOffset</span><span class="p">(</span><span class="n" style="color: #333;">blockid</span><span class="p">,</span><span class="n" style="color: #333;">subblockid</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC458" class="line" lang="cpp"></span>
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459
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<pre style="margin: 0;"> <span id="LC459" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">lz</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SnappyInputStream</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">zptr</span><span class="p">(</span></span>
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395
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460
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<pre style="margin: 0;"> <span id="LC460" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">lz</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SnappyInputStream</span><span class="p">(</span></span>
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<li id="4d497ee1e898c1055f8b71e9ec563a29ef92e1e5">
<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#4d497ee1e898c1055f8b71e9ec563a29ef92e1e5"><strong>src/libmaus2/bambam/parallel/BlockSortControl.hpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -420,6 +420,8 @@ namespace libmaus2</td>
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<pre style="margin: 0;"> <span id="LC420" class="line" lang="cpp"></span>
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421
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<pre style="margin: 0;"> <span id="LC421" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">verbose</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC422" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC423" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">fragmergepar</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC424" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC425" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">freeBuffers</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC426" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC427" class="line" lang="cpp"> <span class="n" style="color: #333;">fragmentBufferFreeListPreSort</span><span class="p">.</span><span class="n" style="color: #333;">reset</span><span class="p">();</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -466,6 +468,7 @@ namespace libmaus2</td>
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<pre style="margin: 0;"> <span id="LC468" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SimpleThreadPool</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">rSTP</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC469" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">istream</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">in</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC470" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">level</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC471" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">rfragmergepar</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC472" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">rtempfileprefix</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC473" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">rhash</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC474" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">bool</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">rfixmates</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">true</span><span class="p">,</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -546,7 +549,8 @@ namespace libmaus2</td>
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<pre style="margin: 0;"> <span id="LC549" class="line" lang="cpp"> <span class="n" style="color: #333;">unmergeFragReadEndsRegions</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">),</span></span>
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<pre style="margin: 0;"> <span id="LC550" class="line" lang="cpp"> <span class="n" style="color: #333;">unmergePairReadEndsRegions</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">),</span></span>
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<pre style="margin: 0;"> <span id="LC551" class="line" lang="cpp"> <span class="n" style="color: #333;">hash</span><span class="p">(</span><span class="n" style="color: #333;">rhash</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC549" class="line" lang="cpp"> <span class="n" style="color: #333;">verbose</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC552" class="line" lang="cpp"> <span class="n" style="color: #333;">verbose</span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">),</span></span>
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<pre style="margin: 0;">+<span id="LC553" class="line" lang="cpp"> <span class="n" style="color: #333;">fragmergepar</span><span class="p">(</span><span class="n" style="color: #333;">rfragmergepar</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC554" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC555" class="line" lang="cpp"> <span class="n" style="color: #333;">STP</span><span class="p">.</span><span class="n" style="color: #333;">registerDispatcher</span><span class="p">(</span><span class="n" style="color: #333;">GICRPDid</span><span class="p">,</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">GICRPD</span><span class="p">);</span></span>
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552
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556
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<pre style="margin: 0;"> <span id="LC556" class="line" lang="cpp"> <span class="n" style="color: #333;">STP</span><span class="p">.</span><span class="n" style="color: #333;">registerDispatcher</span><span class="p">(</span><span class="n" style="color: #333;">GIBDWPDid</span><span class="p">,</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">GIBDWPD</span><span class="p">);</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1284,7 +1288,9 @@ namespace libmaus2</td>
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1284
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1288
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<pre style="margin: 0;"> <span id="LC1288" class="line" lang="cpp"> <span class="p">}</span></span>
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1285
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1289
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<pre style="margin: 0;"> <span id="LC1289" class="line" lang="cpp"> <span class="p">}</span></span>
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1286
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1290
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<pre style="margin: 0;"> <span id="LC1290" class="line" lang="cpp"></span>
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1287
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<pre style="margin: 0;">-<span id="LC1287" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">enqueMergeFragReadEndsLists</span><span class="p">()</span></span>
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1291
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<pre style="margin: 0;">+<span id="LC1291" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">enqueMergeFragReadEndsLists</span><span class="p">(</span></span>
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1292
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<pre style="margin: 0;">+<span id="LC1292" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StdSemaphore</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">shared_ptr_type</span> <span class="n" style="color: #333;">psem</span></span>
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1293
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<pre style="margin: 0;">+<span id="LC1293" class="line" lang="cpp"> <span class="p">)</span></span>
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1288
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1294
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<pre style="margin: 0;"> <span id="LC1294" class="line" lang="cpp"> <span class="p">{</span></span>
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1289
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1295
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<pre style="margin: 0;"> <span id="LC1295" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">verbose</span> <span class="p">)</span></span>
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1290
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1296
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<pre style="margin: 0;"> <span id="LC1296" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1329" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1335" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1329,11 +1335,14 @@ namespace libmaus2</td>
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1329
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1335
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<pre style="margin: 0;"> <span id="LC1335" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ScopeStdSpinLock</span> <span class="n" style="color: #333;">slock</span><span class="p">(</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StreamLock</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerrlock</span><span class="p">);</span></span>
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1330
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1336
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<pre style="margin: 0;"> <span id="LC1336" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\t\t</span><span class="s" style="color: #d14;">(enque FragReadEndsMergeWorkPackage)</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">;</span></span>
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1331
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1337
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<pre style="margin: 0;"> <span id="LC1337" class="line" lang="cpp"> <span class="p">}</span></span>
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1338
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<pre style="margin: 0;">+<span id="LC1338" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bambam</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ReadEndsBlockIndexSetData</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">shared_ptr_type</span> <span class="n" style="color: #333;">setData</span><span class="p">(</span></span>
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1339
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<pre style="margin: 0;">+<span id="LC1339" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bambam</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ReadEndsBlockIndexSetData</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">MI</span><span class="p">)</span></span>
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1340
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<pre style="margin: 0;">+<span id="LC1340" class="line" lang="cpp"> <span class="p">);</span></span>
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1332
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1341
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<pre style="margin: 0;"> <span id="LC1341" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">SMI</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">i</span> <span class="p">)</span></span>
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1333
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1342
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<pre style="margin: 0;"> <span id="LC1342" class="line" lang="cpp"> <span class="p">{</span></span>
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1334
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1343
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<pre style="margin: 0;"> <span id="LC1343" class="line" lang="cpp"> <span class="n" style="color: #333;">ReadEndsMergeRequest</span> <span class="n" style="color: #333;">req</span><span class="p">(</span><span class="n" style="color: #333;">Pdupbitvec</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(),</span><span class="n" style="color: #333;">MI</span><span class="p">,</span><span class="n" style="color: #333;">SMI</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]);</span></span>
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1335
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<td class="diff-line-num new_line" data-linenumber="1344" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1344
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<pre style="margin: 0;"> <span id="LC1344" class="line" lang="cpp"> <span class="n" style="color: #333;">FragReadEndsMergeWorkPackage</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">package</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">fragReadEndsMergeWorkPackages</span><span class="p">.</span><span class="n" style="color: #333;">getPackage</span><span class="p">();</span></span>
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1336
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<td class="diff-line-num new_line old" data-linenumber="1345" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1336" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">package</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">FragReadEndsMergeWorkPackage</span><span class="p">(</span><span class="n" style="color: #333;">req</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="cm" style="color: #998; font-style: italic;">/*prio*/</span><span class="p">,</span><span class="n" style="color: #333;">FREMWPDid</span><span class="p">);</span></span>
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<td class="diff-line-num new old_line" data-linenumber="1337" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1345" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1345
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<pre style="margin: 0;">+<span id="LC1345" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">package</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">FragReadEndsMergeWorkPackage</span><span class="p">(</span><span class="n" style="color: #333;">req</span><span class="p">,</span><span class="n" style="color: #333;"><span class="idiff left">setData</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">psem</span></span><span class="p"><span class="idiff right">,</span></span><span class="mi" style="color: #099;">0</span><span class="cm" style="color: #998; font-style: italic;">/*prio*/</span><span class="p">,</span><span class="n" style="color: #333;">FREMWPDid</span><span class="p">);</span></span>
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1337
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<td class="diff-line-num new_line" data-linenumber="1346" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1346
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<pre style="margin: 0;"> <span id="LC1346" class="line" lang="cpp"> <span class="n" style="color: #333;">package</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">subid</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">i</span><span class="p">;</span></span>
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<td class="diff-line-num old_line" data-linenumber="1338" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1338
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1347
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<pre style="margin: 0;"> <span id="LC1347" class="line" lang="cpp"> <span class="n" style="color: #333;">STP</span><span class="p">.</span><span class="n" style="color: #333;">enque</span><span class="p">(</span><span class="n" style="color: #333;">package</span><span class="p">);</span></span>
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<td class="diff-line-num old_line" data-linenumber="1339" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1339
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1348
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<pre style="margin: 0;"> <span id="LC1348" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1344" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1344,7 +1353,9 @@ namespace libmaus2</td>
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1344
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1353
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<pre style="margin: 0;"> <span id="LC1353" class="line" lang="cpp"> <span class="p">}</span></span>
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1345
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1354
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<pre style="margin: 0;"> <span id="LC1354" class="line" lang="cpp"> <span class="p">}</span></span>
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1346
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1355
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<pre style="margin: 0;"> <span id="LC1355" class="line" lang="cpp"></span>
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1347
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<pre style="margin: 0;">-<span id="LC1347" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">enqueMergePairReadEndsLists</span><span class="p">()</span></span>
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<td class="diff-line-num new old_line" data-linenumber="1348" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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1356
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<pre style="margin: 0;">+<span id="LC1356" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">enqueMergePairReadEndsLists</span><span class="p">(</span></span>
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1357
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<pre style="margin: 0;">+<span id="LC1357" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StdSemaphore</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">shared_ptr_type</span> <span class="n" style="color: #333;">psem</span></span>
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1358
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<pre style="margin: 0;">+<span id="LC1358" class="line" lang="cpp"> <span class="p">)</span></span>
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1348
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1359
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<pre style="margin: 0;"> <span id="LC1359" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num old_line" data-linenumber="1349" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1349
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1360
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<pre style="margin: 0;"> <span id="LC1360" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">verbose</span> <span class="p">)</span></span>
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1350
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1361
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<pre style="margin: 0;"> <span id="LC1361" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1389" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1400" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1389,11 +1400,14 @@ namespace libmaus2</td>
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1389
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1400
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<pre style="margin: 0;"> <span id="LC1400" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ScopeStdSpinLock</span> <span class="n" style="color: #333;">slock</span><span class="p">(</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StreamLock</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerrlock</span><span class="p">);</span></span>
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1390
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<td class="diff-line-num new_line" data-linenumber="1401" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1401
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<pre style="margin: 0;"> <span id="LC1401" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\t\t</span><span class="s" style="color: #d14;">(enque PairReadEndsMergeWorkPackage)</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">;</span></span>
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1391
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1402
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<pre style="margin: 0;"> <span id="LC1402" class="line" lang="cpp"> <span class="p">}</span></span>
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1403
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<pre style="margin: 0;">+<span id="LC1403" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bambam</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ReadEndsBlockIndexSetData</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">shared_ptr_type</span> <span class="n" style="color: #333;">setData</span><span class="p">(</span></span>
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1404
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<pre style="margin: 0;">+<span id="LC1404" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bambam</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ReadEndsBlockIndexSetData</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">MI</span><span class="p">)</span></span>
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1405
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<pre style="margin: 0;">+<span id="LC1405" class="line" lang="cpp"> <span class="p">);</span></span>
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1392
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1406
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<pre style="margin: 0;"> <span id="LC1406" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">SMI</span><span class="p">.</span><span class="n" style="color: #333;">size</span><span class="p">();</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">i</span> <span class="p">)</span></span>
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1393
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1407
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<pre style="margin: 0;"> <span id="LC1407" class="line" lang="cpp"> <span class="p">{</span></span>
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1394
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1408
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<pre style="margin: 0;"> <span id="LC1408" class="line" lang="cpp"> <span class="n" style="color: #333;">ReadEndsMergeRequest</span> <span class="n" style="color: #333;">req</span><span class="p">(</span><span class="n" style="color: #333;">Pdupbitvec</span><span class="p">.</span><span class="n" style="color: #333;">get</span><span class="p">(),</span><span class="n" style="color: #333;">MI</span><span class="p">,</span><span class="n" style="color: #333;">SMI</span><span class="p">[</span><span class="n" style="color: #333;">i</span><span class="p">]);</span></span>
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1395
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1409
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<pre style="margin: 0;"> <span id="LC1409" class="line" lang="cpp"> <span class="n" style="color: #333;">PairReadEndsMergeWorkPackage</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">package</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">pairReadEndsMergeWorkPackages</span><span class="p">.</span><span class="n" style="color: #333;">getPackage</span><span class="p">();</span></span>
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1396
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<pre style="margin: 0;">-<span id="LC1396" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">package</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PairReadEndsMergeWorkPackage</span><span class="p">(</span><span class="n" style="color: #333;">req</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="cm" style="color: #998; font-style: italic;">/*prio*/</span><span class="p">,</span><span class="n" style="color: #333;">PREMWPDid</span><span class="p">);</span></span>
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1410
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<pre style="margin: 0;">+<span id="LC1410" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">*</span><span class="n" style="color: #333;">package</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">PairReadEndsMergeWorkPackage</span><span class="p">(</span><span class="n" style="color: #333;">req</span><span class="p">,</span><span class="n" style="color: #333;"><span class="idiff left">setData</span></span><span class="p"><span class="idiff">,</span></span><span class="n" style="color: #333;"><span class="idiff">psem</span></span><span class="p"><span class="idiff right">,</span></span><span class="mi" style="color: #099;">0</span><span class="cm" style="color: #998; font-style: italic;">/*prio*/</span><span class="p">,</span><span class="n" style="color: #333;">PREMWPDid</span><span class="p">);</span></span>
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1397
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1411
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<pre style="margin: 0;"> <span id="LC1411" class="line" lang="cpp"> <span class="n" style="color: #333;">package</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">subid</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">i</span><span class="p">;</span></span>
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1398
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1412
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<pre style="margin: 0;"> <span id="LC1412" class="line" lang="cpp"> <span class="n" style="color: #333;">STP</span><span class="p">.</span><span class="n" style="color: #333;">enque</span><span class="p">(</span><span class="n" style="color: #333;">package</span><span class="p">);</span></span>
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1399
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1413
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<pre style="margin: 0;"> <span id="LC1413" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1784" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1784,6 +1798,13 @@ namespace libmaus2</td>
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1784
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1798
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<pre style="margin: 0;"> <span id="LC1798" class="line" lang="cpp"></span>
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1785
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1799
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<pre style="margin: 0;"> <span id="LC1799" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">mergeReadEndsLists</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ostream</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">metricsstr</span><span class="p">,</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">progname</span><span class="p">)</span></span>
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1786
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1800
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<pre style="margin: 0;"> <span id="LC1800" class="line" lang="cpp"> <span class="p">{</span></span>
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1801
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<pre style="margin: 0;">+<span id="LC1801" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// set up semaphore to limit parallelism</span></span>
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1802
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<pre style="margin: 0;">+<span id="LC1802" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StdSemaphore</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">shared_ptr_type</span> <span class="n" style="color: #333;">psem</span><span class="p">(</span></span>
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1803
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<pre style="margin: 0;">+<span id="LC1803" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StdSemaphore</span></span>
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1804
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<pre style="margin: 0;">+<span id="LC1804" class="line" lang="cpp"> <span class="p">);</span></span>
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<td class="diff-line-num new old_line" data-linenumber="1787" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1805" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1805
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<pre style="margin: 0;">+<span id="LC1805" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">fragmergepar</span><span class="p">;</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">i</span> <span class="p">)</span></span>
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1806
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<pre style="margin: 0;">+<span id="LC1806" class="line" lang="cpp"> <span class="n" style="color: #333;">psem</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">post</span><span class="p">();</span></span>
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1807
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<pre style="margin: 0;">+<span id="LC1807" class="line" lang="cpp"></span>
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1787
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<td class="diff-line-num new_line" data-linenumber="1808" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1808
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<pre style="margin: 0;"> <span id="LC1808" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// set up duplicate data structure</span></span>
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<td class="diff-line-num old_line" data-linenumber="1788" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1788
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<td class="diff-line-num new_line" data-linenumber="1809" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1809
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<pre style="margin: 0;"> <span id="LC1809" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">ureadsParsed</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">static_cast</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="o" style="font-weight: 600;">></span><span class="p">(</span><span class="n" style="color: #333;">readsParsed</span><span class="p">);</span></span>
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1789
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1810
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<pre style="margin: 0;"> <span id="LC1810" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bitio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">BitVector</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">Tdupbitvec</span><span class="p">(</span><span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bitio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">BitVector</span><span class="p">(</span><span class="n" style="color: #333;">ureadsParsed</span><span class="p">));</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1797" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1818" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1797,7 +1818,7 @@ namespace libmaus2</td>
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1797
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1818
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<pre style="margin: 0;"> <span id="LC1818" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ScopeStdSpinLock</span> <span class="n" style="color: #333;">slock</span><span class="p">(</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StreamLock</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerrlock</span><span class="p">);</span></span>
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1798
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<td class="diff-line-num new_line" data-linenumber="1819" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1819
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<pre style="margin: 0;"> <span id="LC1819" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\n\t</span><span class="s" style="color: #d14;">(call enqueMergeFragReadEndsLists)</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">;</span></span>
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1799
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1820
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<pre style="margin: 0;"> <span id="LC1820" class="line" lang="cpp"> <span class="p">}</span></span>
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1800
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<td class="diff-line-num new_line old" data-linenumber="1821" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1800" class="line" lang="cpp"> <span class="n" style="color: #333;">enqueMergeFragReadEndsLists</span><span class="p">();</span></span>
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1821
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<pre style="margin: 0;">+<span id="LC1821" class="line" lang="cpp"> <span class="n" style="color: #333;">enqueMergeFragReadEndsLists</span><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left right">psem</span></span><span class="p">);</span></span>
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1801
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<td class="diff-line-num new_line" data-linenumber="1822" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1822
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<pre style="margin: 0;"> <span id="LC1822" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">verbose</span> <span class="p">)</span></span>
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<td class="diff-line-num old_line" data-linenumber="1802" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1802
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<td class="diff-line-num new_line" data-linenumber="1823" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1823
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<pre style="margin: 0;"> <span id="LC1823" class="line" lang="cpp"> <span class="p">{</span></span>
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1803
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1824
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<pre style="margin: 0;"> <span id="LC1824" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ScopeStdSpinLock</span> <span class="n" style="color: #333;">slock</span><span class="p">(</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StreamLock</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerrlock</span><span class="p">);</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1809" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1830" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1809,7 +1830,7 @@ namespace libmaus2</td>
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1809
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1830
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<pre style="margin: 0;"> <span id="LC1830" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ScopeStdSpinLock</span> <span class="n" style="color: #333;">slock</span><span class="p">(</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StreamLock</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerrlock</span><span class="p">);</span></span>
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1810
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<td class="diff-line-num new_line" data-linenumber="1831" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1831
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<pre style="margin: 0;"> <span id="LC1831" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"</span><span class="se" style="color: #d14;">\t</span><span class="s" style="color: #d14;">(call enqueMergePairReadEndsLists)</span><span class="se" style="color: #d14;">\n</span><span class="s" style="color: #d14;">"</span><span class="p">;</span></span>
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1811
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1832
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<pre style="margin: 0;"> <span id="LC1832" class="line" lang="cpp"> <span class="p">}</span></span>
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1812
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<pre style="margin: 0;">-<span id="LC1812" class="line" lang="cpp"> <span class="n" style="color: #333;">enqueMergePairReadEndsLists</span><span class="p">();</span></span>
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<pre style="margin: 0;">+<span id="LC1833" class="line" lang="cpp"> <span class="n" style="color: #333;">enqueMergePairReadEndsLists</span><span class="p">(</span><span class="n" style="color: #333;"><span class="idiff left right">psem</span></span><span class="p">);</span></span>
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1834
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<pre style="margin: 0;"> <span id="LC1834" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">verbose</span> <span class="p">)</span></span>
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1835
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<pre style="margin: 0;"> <span id="LC1835" class="line" lang="cpp"> <span class="p">{</span></span>
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1815
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1836
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<pre style="margin: 0;"> <span id="LC1836" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ScopeStdSpinLock</span> <span class="n" style="color: #333;">slock</span><span class="p">(</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StreamLock</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerrlock</span><span class="p">);</span></span>
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<li id="03ea54f28a6e81eb66bbb3e8c3b2e899fd117bcd">
<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#03ea54f28a6e81eb66bbb3e8c3b2e899fd117bcd"><strong>src/libmaus2/bambam/parallel/FragReadEndsMergeWorkPackage.hpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -21,6 +21,7 @@</td>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/parallel/SimpleThreadWorkPackage.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/bambam/parallel/ReadEndsMergeRequest.hpp></span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/bambam/ReadEndsBlockIndexSet.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="cpp"><span class="k" style="font-weight: 600;">namespace</span> <span class="n" style="color: #333;">libmaus2</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="cpp"><span class="p">{</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -35,6 +36,8 @@ namespace libmaus2</td>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">shared_ptr</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">this_type</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">type</span> <span class="n" style="color: #333;">shared_ptr_type</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="cpp"> <span class="n" style="color: #333;">ReadEndsMergeRequest</span> <span class="n" style="color: #333;">REQ</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bambam</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ReadEndsBlockIndexSetData</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">shared_ptr_type</span> <span class="n" style="color: #333;">setData</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StdSemaphore</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">shared_ptr_type</span> <span class="n" style="color: #333;">psem</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="cpp"> <span class="n" style="color: #333;">FragReadEndsMergeWorkPackage</span><span class="p">()</span> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SimpleThreadWorkPackage</span><span class="p">(),</span> <span class="n" style="color: #333;">REQ</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="45" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -42,11 +45,13 @@ namespace libmaus2</td>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="cpp"> <span class="n" style="color: #333;">FragReadEndsMergeWorkPackage</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="cpp"> <span class="n" style="color: #333;">ReadEndsMergeRequest</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">rREQ</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bambam</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ReadEndsBlockIndexSetData</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">shared_ptr_type</span> <span class="n" style="color: #333;">rsetData</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StdSemaphore</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">shared_ptr_type</span> <span class="n" style="color: #333;">rpsem</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">rpriority</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">rdispatcherid</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">rpackageid</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="cpp"> <span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SimpleThreadWorkPackage</span><span class="p">(</span><span class="n" style="color: #333;">rpriority</span><span class="p">,</span><span class="n" style="color: #333;">rdispatcherid</span><span class="p">,</span><span class="n" style="color: #333;">rpackageid</span><span class="p">),</span> <span class="n" style="color: #333;">REQ</span><span class="p">(</span><span class="n" style="color: #333;">rREQ</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SimpleThreadWorkPackage</span><span class="p">(</span><span class="n" style="color: #333;">rpriority</span><span class="p">,</span><span class="n" style="color: #333;">rdispatcherid</span><span class="p">,</span><span class="n" style="color: #333;">rpackageid</span><span class="p">),</span> <span class="n" style="color: #333;">REQ</span><span class="p">(</span><span class="n" style="color: #333;">rREQ</span><span class="p">)<span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">setData</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">rsetData</span></span><span class="p"><span class="idiff">),</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">psem</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">rpsem</span></span><span class="p"><span class="idiff right">)</span></span></span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -58,6 +63,8 @@ namespace libmaus2</td>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SimpleThreadWorkPackage</span><span class="o" style="font-weight: 600;">::</span><span class="k" style="font-weight: 600;">operator</span><span class="o" style="font-weight: 600;">=</span><span class="p">(</span><span class="n" style="color: #333;">O</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="cpp"> <span class="n" style="color: #333;">REQ</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">O</span><span class="p">.</span><span class="n" style="color: #333;">REQ</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="cpp"> <span class="n" style="color: #333;">setData</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">O</span><span class="p">.</span><span class="n" style="color: #333;">setData</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="cpp"> <span class="n" style="color: #333;">psem</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">O</span><span class="p">.</span><span class="n" style="color: #333;">psem</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">this</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="cpp"> <span class="p">}</span></span>
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<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#7977e73f79be4229645fa39c06f64187fe40152a"><strong>src/libmaus2/bambam/parallel/FragReadEndsMergeWorkPackageDispatcher.hpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -61,17 +61,23 @@ namespace libmaus2</td>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">virtual</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">dispatch</span><span class="p">(</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SimpleThreadWorkPackage</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">P</span><span class="p">,</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SimpleThreadPoolInterfaceEnqueTermInterface</span> <span class="o" style="font-weight: 600;">&</span> <span class="cm" style="color: #998; font-style: italic;">/* tpi */</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="cpp"> <span class="n" style="color: #333;">FragReadEndsMergeWorkPackage</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">BP</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">bool</span> <span class="n" style="color: #333;">gotsem</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">false</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">try</span></span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC66" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left">FragReadEndsMergeWorkPackage</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">*</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">BP</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">dynamic_cast</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">FragReadEndsMergeWorkPackage</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="n" style="color: #333;">P</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="cpp"> <span class="n" style="color: #333;">BP</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">dynamic_cast</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">FragReadEndsMergeWorkPackage</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="n" style="color: #333;">P</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="cpp"> <span class="n" style="color: #333;">assert</span> <span class="p">(</span> <span class="n" style="color: #333;">BP</span> <span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="cpp"> <span class="n" style="color: #333;">BP</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">psem</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">wait</span><span class="p">();</span></span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="cpp"> <span class="n" style="color: #333;">gotsem</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">true</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">verbose</span> <span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ScopeStdSpinLock</span> <span class="n" style="color: #333;">slock</span><span class="p">(</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StreamLock</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerrlock</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"FragReadEndsMergeWorkPackageDispatcher package "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">P</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" instantiating ReadEndsBlockIndexSet"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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73
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79
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="cpp"> <span class="p">}</span></span>
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74
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="cpp"> <span class="n" style="color: #333;">ReadEndsBlockIndexSet</span> <span class="n" style="color: #333;">fragindexset</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">BP</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;"><span class="idiff left">REQ</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff right">MI</span></span><span class="p">));</span></span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="cpp"> <span class="n" style="color: #333;">ReadEndsBlockIndexSet</span> <span class="n" style="color: #333;">fragindexset</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">BP</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;"><span class="idiff left right">setData</span></span><span class="p">));</span></span>
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75
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81
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">verbose</span> <span class="p">)</span></span>
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76
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82
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="cpp"> <span class="p">{</span></span>
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77
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83
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ScopeStdSpinLock</span> <span class="n" style="color: #333;">slock</span><span class="p">(</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StreamLock</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerrlock</span><span class="p">);</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -119,6 +125,10 @@ namespace libmaus2</td>
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119
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125
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<pre style="margin: 0;"> <span id="LC125" class="line" lang="cpp"> <span class="p">}</span></span>
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120
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<pre style="margin: 0;"> <span id="LC126" class="line" lang="cpp"></span>
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<td class="diff-line-num old_line" data-linenumber="121" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
121
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<pre style="margin: 0;"> <span id="LC127" class="line" lang="cpp"> <span class="n" style="color: #333;">mergeFinishedInterface</span><span class="p">.</span><span class="n" style="color: #333;">fragReadEndsMergeWorkPackageFinished</span><span class="p">(</span><span class="n" style="color: #333;">BP</span><span class="p">);</span></span>
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128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="cpp"></span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="cpp"> <span class="n" style="color: #333;">BP</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">psem</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">post</span><span class="p">();</span></span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="cpp"> <span class="n" style="color: #333;">gotsem</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">false</span><span class="p">;</span></span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="cpp"></span>
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122
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132
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<pre style="margin: 0;"> <span id="LC132" class="line" lang="cpp"> <span class="n" style="color: #333;">packageReturnInterface</span><span class="p">.</span><span class="n" style="color: #333;">fragReadEndsMergeWorkPackageReturn</span><span class="p">(</span><span class="n" style="color: #333;">BP</span><span class="p">);</span></span>
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123
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133
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="cpp"></span>
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124
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134
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">verbose</span> <span class="p">)</span></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -129,6 +139,9 @@ namespace libmaus2</td>
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129
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139
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="cpp"> <span class="p">}</span></span>
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130
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140
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">catch</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">ex</span><span class="p">)</span></span>
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131
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141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="cpp"> <span class="p">{</span></span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">BP</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">gotsem</span> <span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="cpp"> <span class="n" style="color: #333;">BP</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">psem</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">post</span><span class="p">();</span></span>
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="cpp"></span>
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132
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145
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ScopeStdSpinLock</span> <span class="n" style="color: #333;">slock</span><span class="p">(</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StreamLock</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerrlock</span><span class="p">);</span></span>
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146
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"FragReadEndsMergeWorkPackageDispatcher package "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">P</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" exception: "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">ex</span><span class="p">.</span><span class="n" style="color: #333;">what</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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134
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147
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<pre style="margin: 0;"> <span id="LC147" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span><span class="p">;</span></span>
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<li id="dcfd96938c65aa9168c2d26a5ebc3ada71a70273">
<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#dcfd96938c65aa9168c2d26a5ebc3ada71a70273"><strong>src/libmaus2/bambam/parallel/PairReadEndsMergeWorkPackage.hpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -21,6 +21,7 @@</td>
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21
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/bambam/parallel/ReadEndsMergeRequest.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/parallel/SimpleThreadWorkPackage.hpp></span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/bambam/ReadEndsBlockIndexSet.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="cpp"><span class="k" style="font-weight: 600;">namespace</span> <span class="n" style="color: #333;">libmaus2</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="cpp"><span class="p">{</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -35,18 +36,22 @@ namespace libmaus2</td>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">shared_ptr</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">this_type</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">type</span> <span class="n" style="color: #333;">shared_ptr_type</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="cpp"> <span class="n" style="color: #333;">ReadEndsMergeRequest</span> <span class="n" style="color: #333;">REQ</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bambam</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ReadEndsBlockIndexSetData</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">shared_ptr_type</span> <span class="n" style="color: #333;">setData</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StdSemaphore</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">shared_ptr_type</span> <span class="n" style="color: #333;">psem</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="cpp"> <span class="n" style="color: #333;">PairReadEndsMergeWorkPackage</span><span class="p">()</span> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SimpleThreadWorkPackage</span><span class="p">(),</span> <span class="n" style="color: #333;">REQ</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="cpp"> <span class="n" style="color: #333;">PairReadEndsMergeWorkPackage</span><span class="p">()</span> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SimpleThreadWorkPackage</span><span class="p">(),</span> <span class="n" style="color: #333;">REQ</span><span class="p">()<span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">setData</span></span><span class="p"><span class="idiff right">()</span></span></span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="cpp"> <span class="n" style="color: #333;">PairReadEndsMergeWorkPackage</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="cpp"> <span class="n" style="color: #333;">ReadEndsMergeRequest</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">rREQ</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bambam</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ReadEndsBlockIndexSetData</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">shared_ptr_type</span> <span class="n" style="color: #333;">rsetData</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StdSemaphore</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">shared_ptr_type</span> <span class="n" style="color: #333;">rpsem</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">rpriority</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">rdispatcherid</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">rpackageid</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span></span>
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="cpp"> <span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SimpleThreadWorkPackage</span><span class="p">(</span><span class="n" style="color: #333;">rpriority</span><span class="p">,</span><span class="n" style="color: #333;">rdispatcherid</span><span class="p">,</span><span class="n" style="color: #333;">rpackageid</span><span class="p">),</span> <span class="n" style="color: #333;">REQ</span><span class="p">(</span><span class="n" style="color: #333;">rREQ</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SimpleThreadWorkPackage</span><span class="p">(</span><span class="n" style="color: #333;">rpriority</span><span class="p">,</span><span class="n" style="color: #333;">rdispatcherid</span><span class="p">,</span><span class="n" style="color: #333;">rpackageid</span><span class="p">),</span> <span class="n" style="color: #333;">REQ</span><span class="p">(</span><span class="n" style="color: #333;">rREQ</span><span class="p">)<span class="idiff left">,</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">setData</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">rsetData</span></span><span class="p"><span class="idiff">),</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">psem</span></span><span class="p"><span class="idiff">(</span></span><span class="n" style="color: #333;"><span class="idiff">rpsem</span></span><span class="p"><span class="idiff right">)</span></span></span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -58,6 +63,8 @@ namespace libmaus2</td>
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<pre style="margin: 0;"> <span id="LC63" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SimpleThreadWorkPackage</span><span class="o" style="font-weight: 600;">::</span><span class="k" style="font-weight: 600;">operator</span><span class="o" style="font-weight: 600;">=</span><span class="p">(</span><span class="n" style="color: #333;">O</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="cpp"> <span class="n" style="color: #333;">REQ</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">O</span><span class="p">.</span><span class="n" style="color: #333;">REQ</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="cpp"> <span class="n" style="color: #333;">setData</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">O</span><span class="p">.</span><span class="n" style="color: #333;">setData</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="cpp"> <span class="n" style="color: #333;">psem</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">O</span><span class="p">.</span><span class="n" style="color: #333;">psem</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC68" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="o" style="font-weight: 600;">*</span><span class="k" style="font-weight: 600;">this</span><span class="p">;</span></span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="cpp"> <span class="p">}</span></span>
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<li id="4be54fcd86526de1641f620a8cbe6a3b1137200a">
<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#4be54fcd86526de1641f620a8cbe6a3b1137200a"><strong>src/libmaus2/bambam/parallel/PairReadEndsMergeWorkPackageDispatcher.hpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -64,17 +64,23 @@ namespace libmaus2</td>
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<pre style="margin: 0;"> <span id="LC64" class="line" lang="cpp"></span>
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65
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<pre style="margin: 0;"> <span id="LC65" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">virtual</span> <span class="kt" style="color: #458; font-weight: 600;">void</span> <span class="n" style="color: #333;">dispatch</span><span class="p">(</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SimpleThreadWorkPackage</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">P</span><span class="p">,</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SimpleThreadPoolInterfaceEnqueTermInterface</span> <span class="o" style="font-weight: 600;">&</span> <span class="cm" style="color: #998; font-style: italic;">/* tpi */</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="cpp"> <span class="n" style="color: #333;">PairReadEndsMergeWorkPackage</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">BP</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">NULL</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">bool</span> <span class="n" style="color: #333;">gotsem</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">false</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">try</span></span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left">PairReadEndsMergeWorkPackage</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">*</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">BP</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">dynamic_cast</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">PairReadEndsMergeWorkPackage</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="n" style="color: #333;">P</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="cpp"> <span class="n" style="color: #333;">BP</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">dynamic_cast</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">PairReadEndsMergeWorkPackage</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="n" style="color: #333;">P</span><span class="p">);</span></span>
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70
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="cpp"> <span class="n" style="color: #333;">assert</span> <span class="p">(</span> <span class="n" style="color: #333;">BP</span> <span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="cpp"> <span class="n" style="color: #333;">BP</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">psem</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">wait</span><span class="p">();</span></span>
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="cpp"> <span class="n" style="color: #333;">gotsem</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">true</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC78" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">verbose</span> <span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="cpp"> <span class="p">{</span></span>
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80
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ScopeStdSpinLock</span> <span class="n" style="color: #333;">slock</span><span class="p">(</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StreamLock</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerrlock</span><span class="p">);</span></span>
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75
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81
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"PairReadEndsMergeWorkPackageDispatcher package "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">P</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" instantiating ReadEndsBlockIndexSet"</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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76
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82
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="cpp"> <span class="p">}</span></span>
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77
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="cpp"> <span class="n" style="color: #333;">ReadEndsBlockIndexSet</span> <span class="n" style="color: #333;">pairindexset</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">BP</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;"><span class="idiff left">REQ</span></span><span class="p"><span class="idiff">.</span></span><span class="n" style="color: #333;"><span class="idiff right">MI</span></span><span class="p">));</span></span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="cpp"> <span class="n" style="color: #333;">ReadEndsBlockIndexSet</span> <span class="n" style="color: #333;">pairindexset</span><span class="p">(</span><span class="o" style="font-weight: 600;">*</span><span class="p">(</span><span class="n" style="color: #333;">BP</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;"><span class="idiff left right">setData</span></span><span class="p">));</span></span>
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78
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84
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<pre style="margin: 0;"> <span id="LC84" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">verbose</span> <span class="p">)</span></span>
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79
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85
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<pre style="margin: 0;"> <span id="LC85" class="line" lang="cpp"> <span class="p">{</span></span>
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80
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86
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ScopeStdSpinLock</span> <span class="n" style="color: #333;">slock</span><span class="p">(</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StreamLock</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerrlock</span><span class="p">);</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="123" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="129" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -123,6 +129,10 @@ namespace libmaus2</td>
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129
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<pre style="margin: 0;"> <span id="LC129" class="line" lang="cpp"> <span class="p">}</span></span>
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124
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<pre style="margin: 0;"> <span id="LC130" class="line" lang="cpp"></span>
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125
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131
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<pre style="margin: 0;"> <span id="LC131" class="line" lang="cpp"> <span class="n" style="color: #333;">mergeFinishedInterface</span><span class="p">.</span><span class="n" style="color: #333;">pairReadEndsMergeWorkPackageFinished</span><span class="p">(</span><span class="n" style="color: #333;">BP</span><span class="p">);</span></span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="cpp"></span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="cpp"> <span class="n" style="color: #333;">BP</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">psem</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">post</span><span class="p">();</span></span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="cpp"> <span class="n" style="color: #333;">gotsem</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">false</span><span class="p">;</span></span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="cpp"></span>
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126
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136
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="cpp"> <span class="n" style="color: #333;">packageReturnInterface</span><span class="p">.</span><span class="n" style="color: #333;">pairReadEndsMergeWorkPackageReturn</span><span class="p">(</span><span class="n" style="color: #333;">BP</span><span class="p">);</span></span>
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127
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137
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="cpp"></span>
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128
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138
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">verbose</span> <span class="p">)</span></span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -133,6 +143,9 @@ namespace libmaus2</td>
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133
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143
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<pre style="margin: 0;"> <span id="LC143" class="line" lang="cpp"> <span class="p">}</span></span>
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144
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">catch</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">ex</span><span class="p">)</span></span>
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135
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145
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="cpp"> <span class="p">{</span></span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">BP</span> <span class="o" style="font-weight: 600;">&&</span> <span class="n" style="color: #333;">gotsem</span> <span class="p">)</span></span>
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147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="cpp"> <span class="n" style="color: #333;">BP</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">psem</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">post</span><span class="p">();</span></span>
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148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="cpp"></span>
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136
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149
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">ScopeStdSpinLock</span> <span class="n" style="color: #333;">slock</span><span class="p">(</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">aio</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StreamLock</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerrlock</span><span class="p">);</span></span>
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137
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150
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"PairReadEndsMergeWorkPackageDispatcher exception: "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">ex</span><span class="p">.</span><span class="n" style="color: #333;">what</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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138
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151
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span><span class="p">;</span></span>
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<li id="98f3eac095f5c325c1bfba1f16ee8c49c7ddd583">
<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#98f3eac095f5c325c1bfba1f16ee8c49c7ddd583"><strong>src/libmaus2/network/ClientSocket.hpp</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;">/*</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> libmaus2</span></span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> Copyright (C) 2009-2019 German Tischler</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> Copyright (C) 2011-2013 Genome Research Limited</span></span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="cpp"></span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> This program is free software: you can redistribute it and/or modify</span></span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> it under the terms of the GNU General Public License as published by</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> the Free Software Foundation, either version 3 of the License, or</span></span>
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9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> (at your option) any later version.</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="cpp"></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> This program is distributed in the hope that it will be useful,</span></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> but WITHOUT ANY WARRANTY; without even the implied warranty of</span></span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span></span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> GNU General Public License for more details.</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> You should have received a copy of the GNU General Public License</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> along with this program. If not, see <http://www.gnu.org/licenses/>.</span></span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;">*/</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#if ! defined(LIBMAUS2_CLIENTSOCKET_HPP)</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define LIBMAUS2_CLIENTSOCKET_HPP</span></span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/network/SocketBase.hpp></span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="cpp"><span class="k" style="font-weight: 600;">namespace</span> <span class="n" style="color: #333;">libmaus2</span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="cpp"><span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">namespace</span> <span class="n" style="color: #333;">network</span></span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">ClientSocket</span> <span class="o" style="font-weight: 600;">:</span> <span class="k" style="font-weight: 600;">public</span> <span class="n" style="color: #333;">SocketBase</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">ClientSocket</span> <span class="n" style="color: #333;">this_type</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">typedef</span> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">this_type</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">type</span> <span class="n" style="color: #333;">unique_ptr_type</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="cpp"> <span class="n" style="color: #333;">ClientSocket</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">port</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">hostname</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">SocketBase</span><span class="p">()</span></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="cpp"> <span class="n" style="color: #333;">setAddress</span><span class="p">(</span><span class="n" style="color: #333;">hostname</span><span class="p">,</span> <span class="n" style="color: #333;">remaddr</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="cpp"> <span class="n" style="color: #333;">remaddr</span><span class="p">.</span><span class="n" style="color: #333;">sin_port</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">htons</span><span class="p">(</span><span class="n" style="color: #333;">port</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="cpp"> <span class="n" style="color: #333;">remaddrset</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">true</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="cpp"></span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">while</span> <span class="p">(</span> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">connect</span><span class="p">(</span><span class="n" style="color: #333;">getFD</span><span class="p">(),</span><span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">sockaddr</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">remaddr</span><span class="p">),</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">remaddr</span><span class="p">))</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">0</span> <span class="p">)</span></span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="cpp"> <span class="p">{</span></span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">error</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">errno</span><span class="p">;</span></span>
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43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="cpp"></span>
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44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">switch</span> <span class="p">(</span> <span class="n" style="color: #333;">error</span> <span class="p">)</span></span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="cpp"> <span class="p">{</span></span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">EINTR</span><span class="p">:</span></span>
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47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">EAGAIN</span><span class="p">:</span></span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="cpp"> <span class="nl">default:</span></span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="cpp"> <span class="p">{</span></span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"ClientSocket: connect() failed with error "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">strerror</span><span class="p">(</span><span class="n" style="color: #333;">error</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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55
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="cpp"> <span class="p">}</span></span>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="cpp"> <span class="p">}</span></span>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="cpp"> <span class="p">}</span></span>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">SocketBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">baseCast</span><span class="p">(</span><span class="n" style="color: #333;">ClientSocket</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">C</span><span class="p">)</span></span>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="cpp"> <span class="p">{</span></span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">fd</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">C</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">getFD</span><span class="p">();</span></span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="cpp"> <span class="n" style="color: #333;">C</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">releaseFD</span><span class="p">();</span></span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="cpp"></span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">try</span></span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="cpp"> <span class="p">{</span></span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="cpp"> <span class="n" style="color: #333;">SocketBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">ptr</span> <span class="p">(</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">SocketBase</span><span class="p">(</span><span class="n" style="color: #333;">fd</span><span class="p">)</span> <span class="p">);</span></span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">ptr</span><span class="p">;</span></span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="cpp"> <span class="p">}</span></span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">catch</span><span class="p">(...)</span></span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="cpp"> <span class="p">{</span></span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">close</span><span class="p">(</span><span class="n" style="color: #333;">fd</span><span class="p">);</span></span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span><span class="p">;</span></span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="cpp"> <span class="p">}</span></span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="cpp"> <span class="p">}</span></span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="cpp"></span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">SocketBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">baseAlloc</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">port</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">hostname</span><span class="p">)</span></span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="cpp"> <span class="p">{</span></span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="cpp"> <span class="n" style="color: #333;">ClientSocket</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">ptr</span> <span class="p">(</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">ClientSocket</span><span class="p">(</span><span class="n" style="color: #333;">port</span><span class="p">,</span><span class="n" style="color: #333;">hostname</span><span class="p">)</span> <span class="p">);</span></span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="cpp"> <span class="n" style="color: #333;">SocketBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">baseptr</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">baseCast</span><span class="p">(</span><span class="n" style="color: #333;">ptr</span><span class="p">);</span></span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">baseptr</span><span class="p">;</span></span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">SocketBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">baseAlloc</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">port</span><span class="p">,</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">hostname</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="cpp"> <span class="n" style="color: #333;">SocketBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">baseptr</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">baseAlloc</span><span class="p">(</span><span class="n" style="color: #333;">port</span><span class="p">,</span><span class="n" style="color: #333;">hostname</span><span class="p">.</span><span class="n" style="color: #333;">c_str</span><span class="p">());</span></span>
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">baseptr</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="cpp"> <span class="p">};</span></span>
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="cpp"><span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span></pre>
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<li id="51e7ab33c4e7aaf6d64efd2f38458df7d116dc89">
<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#51e7ab33c4e7aaf6d64efd2f38458df7d116dc89"><strong>src/libmaus2/network/FtpSocket.hpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,7 +22,8 @@</td>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/LibMausConfig.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/network/FtpUrl.hpp></span></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/network/Socket.hpp></span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/network/ClientSocket.hpp></span></span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/network/ServerSocket.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/network/SocketInputStream.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/util/stringFunctions.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="cpp"></span>
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<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#c256e3c4f1a1bb96319a8c14c7b7903f97d06324"><strong>src/libmaus2/network/GnuTLSSocket.hpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -25,7 +25,7 @@</td>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/network/GnuTLSInit.hpp></span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/network/Socket.hpp></span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/network/<span class="idiff left right">Client</span>Socket.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/network/SocketInputOutputInterface.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#if defined(LIBMAUS2_HAVE_GNUTLS)</span></span>
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<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#cb7e5a0c0af198ee9d8f63b52c234fe533f1c820"><strong>src/libmaus2/network/HttpHeader.hpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -22,7 +22,7 @@</td>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/LibMausConfig.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/network/HttpAbsoluteUrl.hpp></span></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/network/Socket.hpp></span></span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/network/<span class="idiff left right">Client</span>Socket.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/network/GnuTLSSocket.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/network/SocketInputStream.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/util/stringFunctions.hpp></span></span>
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<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#4e81b3983d183629a59930d319ee6b18ba09d351"><strong>src/libmaus2/network/ServerSocket.hpp</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;">/*</span></span>
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2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> libmaus2</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> Copyright (C) 2009-2019 German Tischler</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> Copyright (C) 2011-2013 Genome Research Limited</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> This program is free software: you can redistribute it and/or modify</span></span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> it under the terms of the GNU General Public License as published by</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> the Free Software Foundation, either version 3 of the License, or</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> (at your option) any later version.</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="cpp"></span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> This program is distributed in the hope that it will be useful,</span></span>
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12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> but WITHOUT ANY WARRANTY; without even the implied warranty of</span></span>
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13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the</span></span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> GNU General Public License for more details.</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="cpp"></span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> You should have received a copy of the GNU General Public License</span></span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> along with this program. If not, see <http://www.gnu.org/licenses/>.</span></span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;">*/</span></span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#if ! defined(LIBMAUS2_SERVERSOCKET_HPP)</span></span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define LIBMAUS2_SERVERSOCKET_HPP</span></span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/network/SocketBase.hpp></span></span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="cpp"><span class="k" style="font-weight: 600;">namespace</span> <span class="n" style="color: #333;">libmaus2</span></span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="cpp"><span class="p">{</span></span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">namespace</span> <span class="n" style="color: #333;">network</span></span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="cpp"> <span class="p">{</span></span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">ServerSocket</span> <span class="o" style="font-weight: 600;">:</span> <span class="k" style="font-weight: 600;">public</span> <span class="n" style="color: #333;">SocketBase</span></span>
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29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="cpp"> <span class="p">{</span></span>
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30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">ServerSocket</span> <span class="n" style="color: #333;">this_type</span><span class="p">;</span></span>
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31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">typedef</span> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">this_type</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">type</span> <span class="n" style="color: #333;">unique_ptr_type</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="cpp"> <span class="n" style="color: #333;">sockaddr_in</span> <span class="n" style="color: #333;">recadr</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">getPort</span><span class="p">()</span> <span class="k" style="font-weight: 600;">const</span></span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">ntohs</span><span class="p">(</span><span class="n" style="color: #333;">recadr</span><span class="p">.</span><span class="n" style="color: #333;">sin_port</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">allocateServerSocket</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">port</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">backlog</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">hostname</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">tries</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="cpp"> <span class="p">{</span></span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="cpp"> <span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">ptr</span><span class="p">(</span><span class="n" style="color: #333;">allocateServerSocket</span><span class="p">(</span><span class="n" style="color: #333;">port</span><span class="p">,</span><span class="n" style="color: #333;">backlog</span><span class="p">,</span><span class="n" style="color: #333;">hostname</span><span class="p">.</span><span class="n" style="color: #333;">c_str</span><span class="p">(),</span><span class="n" style="color: #333;">tries</span><span class="p">));</span></span>
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47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">ptr</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">allocateServerSocket</span><span class="p">(</span></span>
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">port</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">backlog</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">hostname</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">tries</span><span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC55" class="line" lang="cpp"> <span class="p">{</span></span>
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56
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<pre style="margin: 0;">+<span id="LC56" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">tries</span><span class="p">;</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">i</span> <span class="p">)</span></span>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="cpp"> <span class="p">{</span></span>
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58
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">try</span></span>
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59
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="cpp"> <span class="p">{</span></span>
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60
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">unique_ptr_type</span> <span class="p">(</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">this_type</span><span class="p">(</span><span class="n" style="color: #333;">port</span><span class="p">,</span><span class="n" style="color: #333;">backlog</span><span class="p">,</span><span class="n" style="color: #333;">hostname</span><span class="p">)</span> <span class="p">);</span></span>
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61
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="cpp"> <span class="p">}</span></span>
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62
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">catch</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">ex</span><span class="p">)</span></span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="cpp"> <span class="p">{</span></span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// std::cerr << ex.what() << std::endl;</span></span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="cpp"> <span class="n" style="color: #333;">port</span><span class="o" style="font-weight: 600;">++</span><span class="p">;</span></span>
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66
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="cpp"> <span class="p">}</span></span>
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67
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="cpp"> <span class="p">}</span></span>
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68
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="cpp"></span>
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69
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">ex</span><span class="p">;</span></span>
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70
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="cpp"> <span class="n" style="color: #333;">ex</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Failed to allocate ServerSocket (no ports available)"</span><span class="p">;</span></span>
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71
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="cpp"> <span class="n" style="color: #333;">ex</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">ex</span><span class="p">;</span></span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="cpp"> <span class="p">}</span></span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="cpp"></span>
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75
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<pre style="margin: 0;">+<span id="LC75" class="line" lang="cpp"> <span class="n" style="color: #333;">ServerSocket</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">rport</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">backlog</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">hostname</span><span class="p">)</span></span>
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76
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<pre style="margin: 0;">+<span id="LC76" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">SocketBase</span><span class="p">()</span></span>
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77
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="cpp"> <span class="p">{</span></span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="cpp"> <span class="n" style="color: #333;">memset</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">recadr</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">recadr</span><span class="p">));</span></span>
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79
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<pre style="margin: 0;">+<span id="LC79" class="line" lang="cpp"></span>
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80
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<pre style="margin: 0;">+<span id="LC80" class="line" lang="cpp"> <span class="n" style="color: #333;">setAddress</span><span class="p">(</span><span class="n" style="color: #333;">hostname</span><span class="p">,</span> <span class="n" style="color: #333;">recadr</span><span class="p">);</span></span>
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81
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<pre style="margin: 0;">+<span id="LC81" class="line" lang="cpp"> <span class="n" style="color: #333;">recadr</span><span class="p">.</span><span class="n" style="color: #333;">sin_port</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">htons</span><span class="p">(</span><span class="n" style="color: #333;">rport</span><span class="p">);</span></span>
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82
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<pre style="margin: 0;">+<span id="LC82" class="line" lang="cpp"></span>
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83
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<pre style="margin: 0;">+<span id="LC83" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">while</span> <span class="p">(</span> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bind</span> <span class="p">(</span> <span class="n" style="color: #333;">getFD</span><span class="p">(),</span> <span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">sockaddr</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">recadr</span><span class="p">),</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">recadr</span><span class="p">)</span> <span class="p">)</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">0</span> <span class="p">)</span></span>
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84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="cpp"> <span class="p">{</span></span>
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85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">error</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">errno</span><span class="p">;</span></span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="cpp"></span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">switch</span> <span class="p">(</span> <span class="n" style="color: #333;">error</span> <span class="p">)</span></span>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="cpp"> <span class="p">{</span></span>
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89
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<pre style="margin: 0;">+<span id="LC89" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">EINTR</span><span class="p">:</span></span>
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90
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<pre style="margin: 0;">+<span id="LC90" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">EAGAIN</span><span class="p">:</span></span>
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91
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="92" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
92
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<pre style="margin: 0;">+<span id="LC92" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">EADDRINUSE</span><span class="p">:</span></span>
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93
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<pre style="margin: 0;">+<span id="LC93" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">runtime_error</span><span class="p">(</span><span class="s" style="color: #d14;">"bind: address is already in use."</span><span class="p">);</span></span>
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94
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<pre style="margin: 0;">+<span id="LC94" class="line" lang="cpp"> <span class="nl">default:</span></span>
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95
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<pre style="margin: 0;">+<span id="LC95" class="line" lang="cpp"> <span class="p">{</span></span>
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96
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<pre style="margin: 0;">+<span id="LC96" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="97" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
97
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<pre style="margin: 0;">+<span id="LC97" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"ServerSocket: bind() failed with error "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">strerror</span><span class="p">(</span><span class="n" style="color: #333;">error</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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98
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<pre style="margin: 0;">+<span id="LC98" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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99
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<pre style="margin: 0;">+<span id="LC99" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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100
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<pre style="margin: 0;">+<span id="LC100" class="line" lang="cpp"> <span class="p">}</span></span>
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101
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<pre style="margin: 0;">+<span id="LC101" class="line" lang="cpp"> <span class="p">}</span></span>
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102
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<pre style="margin: 0;">+<span id="LC102" class="line" lang="cpp"> <span class="p">}</span></span>
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103
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<pre style="margin: 0;">+<span id="LC103" class="line" lang="cpp"></span>
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104
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<pre style="margin: 0;">+<span id="LC104" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">while</span> <span class="p">(</span> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">listen</span> <span class="p">(</span> <span class="n" style="color: #333;">getFD</span><span class="p">(),</span> <span class="n" style="color: #333;">backlog</span> <span class="p">)</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">0</span> <span class="p">)</span></span>
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105
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<pre style="margin: 0;">+<span id="LC105" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="106" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
106
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">error</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">errno</span><span class="p">;</span></span>
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107
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="cpp"></span>
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<td class="diff-line-num new new_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
108
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">switch</span> <span class="p">(</span> <span class="n" style="color: #333;">error</span> <span class="p">)</span></span>
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109
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="cpp"> <span class="p">{</span></span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">EINTR</span><span class="p">:</span></span>
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111
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">EAGAIN</span><span class="p">:</span></span>
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112
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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113
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="cpp"> <span class="nl">default:</span></span>
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114
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="115" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
115
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="116" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"ServerSocket: listen() failed with error "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">strerror</span><span class="p">(</span><span class="n" style="color: #333;">error</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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<td class="diff-line-num new new_line" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
118
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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119
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="cpp"> <span class="p">}</span></span>
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120
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<pre style="margin: 0;">+<span id="LC120" class="line" lang="cpp"> <span class="p">}</span></span>
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121
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<pre style="margin: 0;">+<span id="LC121" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC122" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC124" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">~</span><span class="n" style="color: #333;">ServerSocket</span><span class="p">()</span></span>
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125
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<pre style="margin: 0;">+<span id="LC125" class="line" lang="cpp"> <span class="p">{</span></span>
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126
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<pre style="margin: 0;">+<span id="LC126" class="line" lang="cpp"> <span class="p">}</span></span>
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127
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<pre style="margin: 0;">+<span id="LC127" class="line" lang="cpp"></span>
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128
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<pre style="margin: 0;">+<span id="LC128" class="line" lang="cpp"> <span class="n" style="color: #333;">SocketBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">accept</span><span class="p">()</span></span>
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129
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<pre style="margin: 0;">+<span id="LC129" class="line" lang="cpp"> <span class="p">{</span></span>
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130
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<pre style="margin: 0;">+<span id="LC130" class="line" lang="cpp"> <span class="n" style="color: #333;">sockaddr_in</span> <span class="n" style="color: #333;">aadr</span><span class="p">;</span></span>
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131
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<pre style="margin: 0;">+<span id="LC131" class="line" lang="cpp"></span>
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132
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<pre style="margin: 0;">+<span id="LC132" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#if defined(LIBMAUS2_HAVE_SOCKLEN_T)</span></span>
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133
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<pre style="margin: 0;">+<span id="LC133" class="line" lang="cpp"> <span class="n" style="color: #333;">socklen_t</span></span>
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134
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<pre style="margin: 0;">+<span id="LC134" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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135
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<pre style="margin: 0;">+<span id="LC135" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span></span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="cpp"> <span class="n" style="color: #333;">len</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">aadr</span><span class="p">);</span></span>
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138
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<pre style="margin: 0;">+<span id="LC138" class="line" lang="cpp"></span>
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139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">accfd</span><span class="p">;</span></span>
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140
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<pre style="margin: 0;">+<span id="LC140" class="line" lang="cpp"></span>
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141
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">while</span> <span class="p">(</span> <span class="p">(</span><span class="n" style="color: #333;">accfd</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">accept</span><span class="p">(</span><span class="n" style="color: #333;">getFD</span><span class="p">(),</span><span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">sockaddr</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">aadr</span><span class="p">),</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">len</span><span class="p">))</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">0</span> <span class="p">)</span></span>
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142
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<pre style="margin: 0;">+<span id="LC142" class="line" lang="cpp"> <span class="p">{</span></span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">error</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">errno</span><span class="p">;</span></span>
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144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">switch</span> <span class="p">(</span> <span class="n" style="color: #333;">error</span> <span class="p">)</span></span>
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146
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<pre style="margin: 0;">+<span id="LC146" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">EINTR</span><span class="p">:</span></span>
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<td class="diff-line-num new new_line" data-linenumber="148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">EAGAIN</span><span class="p">:</span></span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="cpp"> <span class="nl">default:</span></span>
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151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="152" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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<td class="diff-line-num new new_line" data-linenumber="153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"ServerSocket::accept: accept() failed with error "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">strerror</span><span class="p">(</span><span class="n" style="color: #333;">errno</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="cpp"> <span class="p">}</span></span>
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157
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<pre style="margin: 0;">+<span id="LC157" class="line" lang="cpp"> <span class="p">}</span></span>
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158
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<pre style="margin: 0;">+<span id="LC158" class="line" lang="cpp"> <span class="p">}</span></span>
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159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="cpp"></span>
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160
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">try</span></span>
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161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="cpp"> <span class="p">{</span></span>
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<td class="diff-line-num new new_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="cpp"> <span class="n" style="color: #333;">SocketBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">ptr</span><span class="p">(</span><span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">SocketBase</span><span class="p">(</span><span class="n" style="color: #333;">accfd</span><span class="p">,</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">aadr</span><span class="p">));</span></span>
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163
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">ptr</span><span class="p">;</span></span>
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164
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<pre style="margin: 0;">+<span id="LC164" class="line" lang="cpp"> <span class="p">}</span></span>
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165
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<pre style="margin: 0;">+<span id="LC165" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">catch</span><span class="p">(...)</span></span>
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166
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<pre style="margin: 0;">+<span id="LC166" class="line" lang="cpp"> <span class="p">{</span></span>
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167
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<pre style="margin: 0;">+<span id="LC167" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">close</span><span class="p">(</span><span class="n" style="color: #333;">accfd</span><span class="p">);</span></span>
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168
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<pre style="margin: 0;">+<span id="LC168" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span><span class="p">;</span></span>
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169
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<pre style="margin: 0;">+<span id="LC169" class="line" lang="cpp"> <span class="p">}</span></span>
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170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="cpp"> <span class="p">}</span></span>
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171
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<pre style="margin: 0;">+<span id="LC171" class="line" lang="cpp"></span>
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172
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<pre style="margin: 0;">+<span id="LC172" class="line" lang="cpp"> <span class="n" style="color: #333;">SocketBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">shared_ptr_type</span> <span class="n" style="color: #333;">acceptShared</span><span class="p">()</span></span>
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173
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<pre style="margin: 0;">+<span id="LC173" class="line" lang="cpp"> <span class="p">{</span></span>
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174
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<pre style="margin: 0;">+<span id="LC174" class="line" lang="cpp"> <span class="n" style="color: #333;">SocketBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">uptr</span><span class="p">(</span><span class="n" style="color: #333;">accept</span><span class="p">());</span></span>
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175
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<pre style="margin: 0;">+<span id="LC175" class="line" lang="cpp"> <span class="n" style="color: #333;">SocketBase</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">ptr</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">uptr</span><span class="p">.</span><span class="n" style="color: #333;">release</span><span class="p">();</span></span>
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176
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<pre style="margin: 0;">+<span id="LC176" class="line" lang="cpp"> <span class="n" style="color: #333;">SocketBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">shared_ptr_type</span> <span class="n" style="color: #333;">sptr</span><span class="p">(</span><span class="n" style="color: #333;">ptr</span><span class="p">);</span></span>
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177
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<pre style="margin: 0;">+<span id="LC177" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">sptr</span><span class="p">;</span></span>
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178
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<pre style="margin: 0;">+<span id="LC178" class="line" lang="cpp"> <span class="p">}</span></span>
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179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="cpp"></span>
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180
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<pre style="margin: 0;">+<span id="LC180" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">bool</span> <span class="n" style="color: #333;">waitForConnection</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">t</span><span class="p">)</span></span>
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181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="cpp"> <span class="p">{</span></span>
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182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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183
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="cpp"></span>
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184
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<pre style="margin: 0;">+<span id="LC184" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">while</span> <span class="p">(</span> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">0</span> <span class="p">)</span></span>
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185
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<pre style="margin: 0;">+<span id="LC185" class="line" lang="cpp"> <span class="p">{</span></span>
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186
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<pre style="margin: 0;">+<span id="LC186" class="line" lang="cpp"> <span class="n" style="color: #333;">fd_set</span> <span class="n" style="color: #333;">fds</span><span class="p">;</span></span>
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187
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<pre style="margin: 0;">+<span id="LC187" class="line" lang="cpp"> <span class="n" style="color: #333;">FD_ZERO</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">fds</span><span class="p">);</span></span>
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188
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="cpp"> <span class="n" style="color: #333;">FD_SET</span><span class="p">(</span><span class="n" style="color: #333;">getFD</span><span class="p">(),</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">fds</span><span class="p">);</span></span>
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189
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">timeval</span> <span class="n" style="color: #333;">timeout</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span></span>
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190
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static_cast</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">long</span><span class="o" style="font-weight: 600;">></span><span class="p">(</span><span class="n" style="color: #333;">t</span><span class="p">),</span></span>
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191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static_cast</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">long</span><span class="o" style="font-weight: 600;">></span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
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192
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="cpp"> <span class="p">};</span></span>
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193
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="cpp"></span>
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194
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="cpp"> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">select</span><span class="p">(</span><span class="n" style="color: #333;">getFD</span><span class="p">()</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">fds</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">timeout</span><span class="p">);</span></span>
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195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="cpp"></span>
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196
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">0</span> <span class="p">)</span></span>
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197
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="cpp"> <span class="p">{</span></span>
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198
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">error</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">errno</span><span class="p">;</span></span>
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199
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="cpp"></span>
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200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">switch</span> <span class="p">(</span> <span class="n" style="color: #333;">error</span> <span class="p">)</span></span>
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201
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="cpp"> <span class="p">{</span></span>
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202
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<pre style="margin: 0;">+<span id="LC202" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">EINTR</span><span class="p">:</span></span>
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203
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<pre style="margin: 0;">+<span id="LC203" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">EAGAIN</span><span class="p">:</span></span>
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204
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<pre style="margin: 0;">+<span id="LC204" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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205
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<pre style="margin: 0;">+<span id="LC205" class="line" lang="cpp"> <span class="nl">default:</span></span>
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206
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<pre style="margin: 0;">+<span id="LC206" class="line" lang="cpp"> <span class="p">{</span></span>
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207
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<pre style="margin: 0;">+<span id="LC207" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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208
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<pre style="margin: 0;">+<span id="LC208" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"ServerSocket::waitForConnection: select failed on socket with error "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">strerror</span><span class="p">(</span><span class="n" style="color: #333;">error</span><span class="p">)</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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209
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<pre style="margin: 0;">+<span id="LC209" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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210
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<pre style="margin: 0;">+<span id="LC210" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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211
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<pre style="margin: 0;">+<span id="LC211" class="line" lang="cpp"> <span class="p">}</span></span>
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212
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<pre style="margin: 0;">+<span id="LC212" class="line" lang="cpp"> <span class="p">}</span></span>
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213
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<pre style="margin: 0;">+<span id="LC213" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC214" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC216" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">0</span> <span class="p">)</span></span>
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<pre style="margin: 0;">+<span id="LC217" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC218" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">false</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC219" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC220" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">+<span id="LC221" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="cpp"> <span class="n" style="color: #333;">assert</span> <span class="p">(</span> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">></span> <span class="mi" style="color: #099;">0</span> <span class="p">);</span></span>
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223
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<pre style="margin: 0;">+<span id="LC223" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">true</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC225" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC226" class="line" lang="cpp"> <span class="p">};</span></span>
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<pre style="margin: 0;">+<span id="LC227" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="cpp"><span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span></pre>
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<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#bcfeb543389b18954150c59ffd65ff09eac4ba79"><strong>src/libmaus2/network/Socket.hpp</strong>
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<strong>src/libmaus2/network/SocketBase.hpp</strong>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;">/*</span></span>
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> libmaus2</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> Copyright (C) 2009-201<span class="idiff left right">3</span> German Tischler</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> Copyright (C) 2009-201<span class="idiff left right">9</span> German Tischler</span></span>
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> Copyright (C) 2011-2013 Genome Research Limited</span></span>
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5
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> This program is free software: you can redistribute it and/or modify</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -16,9 +16,10 @@</td>
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16
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> You should have received a copy of the GNU General Public License</span></span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;"> along with this program. If not, see <http://www.gnu.org/licenses/>.</span></span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="cpp"><span class="cm" style="color: #998; font-style: italic;">*/</span></span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#if ! defined(LIBMAUS2_SOCKETBASE_HPP)</span></span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define LIBMAUS2_SOCKETBASE_HPP</span></span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#if ! defined(LIBMAUS2_SOCKET_HPP)</span></span>
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#define LIBMAUS2_SOCKET_HPP</span></span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/LibMausWindows.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#if defined(LIBMAUAS2_HAVE_UNISTD_H)</span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <unistd.h></span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="49" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -48,7 +49,9 @@</td>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <sys/ioctl.h></span></span>
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49
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="cpp"></span>
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#if defined(LIBMAUS2_HAVE_LIBGEN_H)</span></span>
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51
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<pre style="margin: 0;"> <span id="LC53" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libgen.h></span></span>
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#if defined(LIBMAUS2_HAVE_NETDB_H)</span></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <netdb.h></span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="66" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="69" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -66,27 +69,20 @@</td>
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <sys/resource.h></span></span>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC69" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/LibMausWindows.hpp></span></span>
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70
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<pre style="margin: 0;">-<span id="LC70" class="line" lang="cpp"></span>
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72
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <cerrno></span></span>
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71
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73
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<pre style="margin: 0;"> <span id="LC73" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <climits></span></span>
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72
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74
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <cstdlib></span></span>
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73
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75
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <cstring></span></span>
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74
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<pre style="margin: 0;">-<span id="LC74" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <cerrno></span></span>
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75
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76
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <iostream></span></span>
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76
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77
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <set></span></span>
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78
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <stdexcept></span></span>
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77
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79
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="cpp"></span>
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78
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80
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/exception/LibMausException.hpp></span></span>
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79
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<pre style="margin: 0;">-<span id="LC79" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/util/unique_ptr.hpp></span></span>
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80
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<pre style="margin: 0;">-<span id="LC80" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/util/shared_ptr.hpp></span></span>
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81
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81
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/network/GetHostName.hpp></span></span>
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82
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82
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/network/SocketInputOutputInterface.hpp></span></span>
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83
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<td class="diff-line-num new_line old" data-linenumber="83" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC83" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <stdexcept></span></span>
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84
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="cpp"></span>
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85
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83
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/posix/PosixFunctions.hpp></span></span>
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86
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<pre style="margin: 0;">-<span id="LC86" class="line" lang="cpp"></span>
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<td class="diff-line-num old old_line" data-linenumber="87" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
87
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<pre style="margin: 0;">-<span id="LC87" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#if defined(__APPLE__)</span></span>
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88
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<td class="diff-line-num new_line old" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC88" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <netinet/tcp.h></span></span>
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<td class="diff-line-num old old_line" data-linenumber="89" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
89
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<pre style="margin: 0;">-<span id="LC89" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<td class="diff-line-num new new_line" data-linenumber="84" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
84
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/util/unique_ptr.hpp></span></span>
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<td class="diff-line-num new new_line" data-linenumber="85" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
85
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/util/shared_ptr.hpp></span></span>
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90
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86
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<pre style="margin: 0;"> <span id="LC86" class="line" lang="cpp"></span>
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91
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87
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<pre style="margin: 0;"> <span id="LC87" class="line" lang="cpp"><span class="k" style="font-weight: 600;">namespace</span> <span class="n" style="color: #333;">libmaus2</span></span>
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92
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88
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="cpp"><span class="p">{</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="107" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -111,7 +107,7 @@ namespace libmaus2</td>
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111
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107
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<pre style="margin: 0;"> <span id="LC107" class="line" lang="cpp"> <span class="p">{</span></span>
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112
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108
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<pre style="margin: 0;"> <span id="LC108" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">fd</span> <span class="o" style="font-weight: 600;">!=</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span> <span class="p">)</span></span>
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113
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109
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<pre style="margin: 0;"> <span id="LC109" class="line" lang="cpp"> <span class="p">{</span></span>
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114
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="cpp"> <span class="n" style="color: #333;">close</span><span class="p">(</span><span class="n" style="color: #333;">fd</span><span class="p">);</span></span>
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110
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="cpp"> <span class="o" style="font-weight: 600;"><span class="idiff left right">::</span></span><span class="n" style="color: #333;">close</span><span class="p">(</span><span class="n" style="color: #333;">fd</span><span class="p">);</span></span>
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115
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111
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<pre style="margin: 0;"> <span id="LC111" class="line" lang="cpp"> <span class="n" style="color: #333;">fd</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">1</span><span class="p">;</span></span>
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116
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112
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="cpp"> <span class="p">}</span></span>
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117
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113
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="cpp"> <span class="p">}</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="140" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -140,25 +136,31 @@ namespace libmaus2</td>
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140
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136
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<pre style="margin: 0;"> <span id="LC136" class="line" lang="cpp"> <span class="p">{</span></span>
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141
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137
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<pre style="margin: 0;"> <span id="LC137" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">while</span> <span class="p">(</span> <span class="n" style="color: #333;">len</span> <span class="p">)</span></span>
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142
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138
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="cpp"> <span class="p">{</span></span>
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143
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<pre style="margin: 0;">-<span id="LC143" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="kt" style="color: #458; font-weight: 600;">ssize_t</span> <span class="n" style="color: #333;">wr</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">posix</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">PosixFunctions</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">write</span> <span class="p">(</span> <span class="n" style="color: #333;">fd</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">len</span> <span class="p">);</span></span>
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139
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<pre style="margin: 0;">+<span id="LC139" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="kt" style="color: #458; font-weight: 600;">ssize_t</span> <span class="k" style="font-weight: 600;"><span class="idiff left">const</span></span><span class="idiff right"> </span><span class="n" style="color: #333;">wr</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">posix</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">PosixFunctions</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">write</span> <span class="p">(</span> <span class="n" style="color: #333;">fd</span><span class="p">,</span> <span class="n" style="color: #333;">data</span><span class="p">,</span> <span class="n" style="color: #333;">len</span> <span class="p">);</span></span>
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144
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140
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="cpp"></span>
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145
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141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">wr</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">0</span> <span class="p">)</span></span>
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146
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142
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="cpp"> <span class="p">{</span></span>
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147
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<pre style="margin: 0;">-<span id="LC147" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">errno</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">EINTR</span> <span class="p">)</span></span>
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148
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<pre style="margin: 0;">-<span id="LC148" class="line" lang="cpp"> <span class="p">{</span></span>
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149
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<pre style="margin: 0;">-<span id="LC149" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">cerr</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"write interrupted by signal."</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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150
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<pre style="margin: 0;">-<span id="LC150" class="line" lang="cpp"> <span class="p">}</span></span>
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151
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<pre style="margin: 0;">-<span id="LC151" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">error</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">errno</span><span class="p">;</span></span>
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144
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<pre style="margin: 0;">+<span id="LC144" class="line" lang="cpp"></span>
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145
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<pre style="margin: 0;">+<span id="LC145" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">switch</span> <span class="p">(</span> <span class="n" style="color: #333;">error</span> <span class="p">)</span></span>
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152
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146
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="cpp"> <span class="p">{</span></span>
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153
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<pre style="margin: 0;">-<span id="LC153" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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154
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<pre style="margin: 0;">-<span id="LC154" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"SocketBase::write() to "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">getStringAddr</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" failed: "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">strerror</span><span class="p">(</span><span class="n" style="color: #333;">errno</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC155" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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156
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<pre style="margin: 0;">-<span id="LC156" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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147
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<pre style="margin: 0;">+<span id="LC147" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">EINTR</span><span class="p">:</span></span>
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148
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<pre style="margin: 0;">+<span id="LC148" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">EAGAIN</span><span class="p">:</span></span>
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149
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<pre style="margin: 0;">+<span id="LC149" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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150
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<pre style="margin: 0;">+<span id="LC150" class="line" lang="cpp"> <span class="nl">default:</span></span>
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151
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<pre style="margin: 0;">+<span id="LC151" class="line" lang="cpp"> <span class="p">{</span></span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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153
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<pre style="margin: 0;">+<span id="LC153" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"SocketBase::write() to "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">getStringAddr</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" failed: "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">strerror</span><span class="p">(</span><span class="n" style="color: #333;">errno</span><span class="p">);</span></span>
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154
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<pre style="margin: 0;">+<span id="LC154" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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155
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<pre style="margin: 0;">+<span id="LC155" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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156
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<pre style="margin: 0;">+<span id="LC156" class="line" lang="cpp"> <span class="p">}</span></span>
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157
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157
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<pre style="margin: 0;"> <span id="LC157" class="line" lang="cpp"> <span class="p">}</span></span>
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158
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158
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="cpp"> <span class="p">}</span></span>
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159
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<pre style="margin: 0;">-<span id="LC159" class="line" lang="cpp"></span>
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160
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<pre style="margin: 0;">-<span id="LC160" class="line" lang="cpp"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">wr</span><span class="p">;</span></span>
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161
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<pre style="margin: 0;">-<span id="LC161" class="line" lang="cpp"> <span class="n" style="color: #333;">len</span> <span class="o" style="font-weight: 600;">-=</span> <span class="n" style="color: #333;">wr</span><span class="p">;</span></span>
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159
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<pre style="margin: 0;">+<span id="LC159" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">+<span id="LC160" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="cpp"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">wr</span><span class="p">;</span></span>
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162
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<pre style="margin: 0;">+<span id="LC162" class="line" lang="cpp"> <span class="n" style="color: #333;">len</span> <span class="o" style="font-weight: 600;">-=</span> <span class="n" style="color: #333;">wr</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC163" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="cpp"> <span class="p">}</span></span>
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165
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<pre style="margin: 0;"> <span id="LC165" class="line" lang="cpp"> <span class="p">}</span></span>
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166
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<pre style="margin: 0;"> <span id="LC166" class="line" lang="cpp"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -176,13 +178,27 @@ namespace libmaus2</td>
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176
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178
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="cpp"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">red</span><span class="p">;</span></span>
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179
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<pre style="margin: 0;"> <span id="LC179" class="line" lang="cpp"> <span class="n" style="color: #333;">len</span> <span class="o" style="font-weight: 600;">-=</span> <span class="n" style="color: #333;">red</span><span class="p">;</span></span>
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178
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180
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="cpp"> <span class="p">}</span></span>
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179
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<pre style="margin: 0;">-<span id="LC179" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">red</span> <span class="o" style="font-weight: 600;"><span class="idiff left"><</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&&</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">errno</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">EINTR</span></span> <span class="p">)</span></span>
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181
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<pre style="margin: 0;">+<span id="LC181" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">red</span> <span class="o" style="font-weight: 600;"><span class="idiff left">==</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff right">0</span></span> <span class="p">)</span></span>
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180
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182
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<pre style="margin: 0;"> <span id="LC182" class="line" lang="cpp"> <span class="p">{</span></span>
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181
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<pre style="margin: 0;">-<span id="LC181" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left">std</span></span><span class="o" style="font-weight: 600;"><span class="idiff">::</span></span><span class="n" style="color: #333;"><span class="idiff">cerr</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff"><<</span></span><span class="idiff"> </span><span class="s" style="color: #d14;"><span class="idiff">"read interrupted by signal."</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff"><<</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">std</span></span><span class="o" style="font-weight: 600;"><span class="idiff">::</span></span><span class="n" style="color: #333;"><span class="idiff right">endl</span></span><span class="p">;</span></span>
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183
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<pre style="margin: 0;">+<span id="LC183" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left">len</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff right">0</span></span><span class="p">;</span></span>
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182
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184
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="cpp"> <span class="p">}</span></span>
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183
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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184
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186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="cpp"> <span class="p">{</span></span>
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185
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<pre style="margin: 0;">-<span id="LC185" class="line" lang="cpp"> <span class="n" style="color: #333;">len</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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187
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<pre style="margin: 0;">+<span id="LC187" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">error</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">errno</span><span class="p">;</span></span>
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188
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="cpp"></span>
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189
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">switch</span> <span class="p">(</span> <span class="n" style="color: #333;">error</span> <span class="p">)</span></span>
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190
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<pre style="margin: 0;">+<span id="LC190" class="line" lang="cpp"> <span class="p">{</span></span>
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191
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<pre style="margin: 0;">+<span id="LC191" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">EINTR</span><span class="p">:</span></span>
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192
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<pre style="margin: 0;">+<span id="LC192" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">EAGAIN</span><span class="p">:</span></span>
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193
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<pre style="margin: 0;">+<span id="LC193" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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194
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<pre style="margin: 0;">+<span id="LC194" class="line" lang="cpp"> <span class="nl">default:</span></span>
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195
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<pre style="margin: 0;">+<span id="LC195" class="line" lang="cpp"> <span class="p">{</span></span>
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196
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<pre style="margin: 0;">+<span id="LC196" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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197
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<pre style="margin: 0;">+<span id="LC197" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"SocketBase::read() to "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">getStringAddr</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" failed: "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">strerror</span><span class="p">(</span><span class="n" style="color: #333;">errno</span><span class="p">);</span></span>
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198
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<pre style="margin: 0;">+<span id="LC198" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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199
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<pre style="margin: 0;">+<span id="LC199" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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200
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<pre style="margin: 0;">+<span id="LC200" class="line" lang="cpp"> <span class="p">}</span></span>
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201
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<pre style="margin: 0;">+<span id="LC201" class="line" lang="cpp"> <span class="p">}</span></span>
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186
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202
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<pre style="margin: 0;"> <span id="LC202" class="line" lang="cpp"> <span class="p">}</span></span>
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187
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203
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<pre style="margin: 0;"> <span id="LC203" class="line" lang="cpp"> <span class="p">}</span></span>
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188
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204
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<pre style="margin: 0;"> <span id="LC204" class="line" lang="cpp"></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="219" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -203,13 +219,27 @@ namespace libmaus2</td>
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203
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219
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<pre style="margin: 0;"> <span id="LC219" class="line" lang="cpp"> <span class="n" style="color: #333;">data</span> <span class="o" style="font-weight: 600;">+=</span> <span class="n" style="color: #333;">red</span><span class="p">;</span></span>
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204
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220
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<pre style="margin: 0;"> <span id="LC220" class="line" lang="cpp"> <span class="n" style="color: #333;">len</span> <span class="o" style="font-weight: 600;">-=</span> <span class="n" style="color: #333;">red</span><span class="p">;</span></span>
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205
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221
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<pre style="margin: 0;"> <span id="LC221" class="line" lang="cpp"> <span class="p">}</span></span>
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206
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<pre style="margin: 0;">-<span id="LC206" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">red</span> <span class="o" style="font-weight: 600;"><span class="idiff left"><</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff">0</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">&&</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">errno</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">==</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff right">EINTR</span></span> <span class="p">)</span></span>
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222
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<pre style="margin: 0;">+<span id="LC222" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">red</span> <span class="o" style="font-weight: 600;"><span class="idiff left">==</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff right">0</span></span> <span class="p">)</span></span>
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207
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223
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<pre style="margin: 0;"> <span id="LC223" class="line" lang="cpp"> <span class="p">{</span></span>
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208
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<pre style="margin: 0;">-<span id="LC208" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left">std</span></span><span class="o" style="font-weight: 600;"><span class="idiff">::</span></span><span class="n" style="color: #333;"><span class="idiff">cerr</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff"><<</span></span><span class="idiff"> </span><span class="s" style="color: #d14;"><span class="idiff">"read interrupted by signal."</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff"><<</span></span><span class="idiff"> </span><span class="n" style="color: #333;"><span class="idiff">std</span></span><span class="o" style="font-weight: 600;"><span class="idiff">::</span></span><span class="n" style="color: #333;"><span class="idiff right">endl</span></span><span class="p">;</span></span>
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224
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<pre style="margin: 0;">+<span id="LC224" class="line" lang="cpp"> <span class="n" style="color: #333;"><span class="idiff left">len</span></span><span class="idiff"> </span><span class="o" style="font-weight: 600;"><span class="idiff">=</span></span><span class="idiff"> </span><span class="mi" style="color: #099;"><span class="idiff right">0</span></span><span class="p">;</span></span>
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209
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225
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<pre style="margin: 0;"> <span id="LC225" class="line" lang="cpp"> <span class="p">}</span></span>
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210
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226
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<pre style="margin: 0;"> <span id="LC226" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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211
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227
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<pre style="margin: 0;"> <span id="LC227" class="line" lang="cpp"> <span class="p">{</span></span>
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212
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<pre style="margin: 0;">-<span id="LC212" class="line" lang="cpp"> <span class="n" style="color: #333;">len</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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228
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<pre style="margin: 0;">+<span id="LC228" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">error</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">errno</span><span class="p">;</span></span>
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229
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<pre style="margin: 0;">+<span id="LC229" class="line" lang="cpp"></span>
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230
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<pre style="margin: 0;">+<span id="LC230" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">switch</span> <span class="p">(</span> <span class="n" style="color: #333;">error</span> <span class="p">)</span></span>
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231
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<pre style="margin: 0;">+<span id="LC231" class="line" lang="cpp"> <span class="p">{</span></span>
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232
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<pre style="margin: 0;">+<span id="LC232" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">EINTR</span><span class="p">:</span></span>
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233
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<pre style="margin: 0;">+<span id="LC233" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">case</span> <span class="n" style="color: #333;">EAGAIN</span><span class="p">:</span></span>
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234
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<pre style="margin: 0;">+<span id="LC234" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">break</span><span class="p">;</span></span>
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235
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<pre style="margin: 0;">+<span id="LC235" class="line" lang="cpp"> <span class="nl">default:</span></span>
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236
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<pre style="margin: 0;">+<span id="LC236" class="line" lang="cpp"> <span class="p">{</span></span>
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237
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<pre style="margin: 0;">+<span id="LC237" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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238
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<pre style="margin: 0;">+<span id="LC238" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"SocketBase::readPart() to "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">getStringAddr</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">" failed: "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">strerror</span><span class="p">(</span><span class="n" style="color: #333;">errno</span><span class="p">);</span></span>
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239
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<pre style="margin: 0;">+<span id="LC239" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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240
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<pre style="margin: 0;">+<span id="LC240" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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<pre style="margin: 0;">+<span id="LC241" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">+<span id="LC242" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC243" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC244" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC245" class="line" lang="cpp"></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -349,16 +379,6 @@ namespace libmaus2</td>
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<pre style="margin: 0;"> <span id="LC379" class="line" lang="cpp"> <span class="n" style="color: #333;">cleanup</span><span class="p">();</span></span>
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<pre style="margin: 0;"> <span id="LC380" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC381" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC352" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">bool</span> <span class="n" style="color: #333;">hasData</span><span class="p">()</span></span>
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<pre style="margin: 0;">-<span id="LC353" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC354" class="line" lang="cpp"> <span class="n" style="color: #333;">fd_set</span> <span class="n" style="color: #333;">readfds</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC355" class="line" lang="cpp"> <span class="n" style="color: #333;">FD_ZERO</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">readfds</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC356" class="line" lang="cpp"> <span class="n" style="color: #333;">FD_SET</span><span class="p">(</span><span class="n" style="color: #333;">fd</span><span class="p">,</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">readfds</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC357" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">timeval</span> <span class="n" style="color: #333;">tv</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span> <span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="mi" style="color: #099;">0</span> <span class="p">};</span></span>
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<pre style="margin: 0;">-<span id="LC358" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">selok</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">select</span><span class="p">(</span><span class="n" style="color: #333;">fd</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">readfds</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">tv</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC359" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">selok</span> <span class="o" style="font-weight: 600;">></span> <span class="mi" style="color: #099;">0</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC360" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC361" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC382" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">getFD</span><span class="p">()</span> <span class="k" style="font-weight: 600;">const</span></span>
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<pre style="margin: 0;"> <span id="LC383" class="line" lang="cpp"> <span class="p">{</span></span>
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384
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<pre style="margin: 0;"> <span id="LC384" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">fd</span><span class="p">;</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="372" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="392" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -372,204 +392,6 @@ namespace libmaus2</td>
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392
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<pre style="margin: 0;"> <span id="LC392" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC393" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC394" class="line" lang="cpp"> <span class="p">};</span></span>
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<pre style="margin: 0;">-<span id="LC375" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC376" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">ClientSocket</span> <span class="o" style="font-weight: 600;">:</span> <span class="k" style="font-weight: 600;">public</span> <span class="n" style="color: #333;">SocketBase</span></span>
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<pre style="margin: 0;">-<span id="LC377" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC378" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">ClientSocket</span> <span class="n" style="color: #333;">this_type</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC379" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">typedef</span> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">this_type</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">type</span> <span class="n" style="color: #333;">unique_ptr_type</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC380" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC381" class="line" lang="cpp"> <span class="n" style="color: #333;">ClientSocket</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">port</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">hostname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC382" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">SocketBase</span><span class="p">()</span></span>
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<pre style="margin: 0;">-<span id="LC383" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC384" class="line" lang="cpp"> <span class="n" style="color: #333;">setAddress</span><span class="p">(</span><span class="n" style="color: #333;">hostname</span><span class="p">,</span> <span class="n" style="color: #333;">remaddr</span><span class="p">);</span></span>
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385
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<pre style="margin: 0;">-<span id="LC385" class="line" lang="cpp"> <span class="n" style="color: #333;">remaddr</span><span class="p">.</span><span class="n" style="color: #333;">sin_port</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">htons</span><span class="p">(</span><span class="n" style="color: #333;">port</span><span class="p">);</span></span>
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386
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<pre style="margin: 0;">-<span id="LC386" class="line" lang="cpp"> <span class="n" style="color: #333;">remaddrset</span> <span class="o" style="font-weight: 600;">=</span> <span class="nb" style="color: #0086b3;">true</span><span class="p">;</span></span>
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387
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<pre style="margin: 0;">-<span id="LC387" class="line" lang="cpp"></span>
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388
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<pre style="margin: 0;">-<span id="LC388" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">connect</span><span class="p">(</span><span class="n" style="color: #333;">getFD</span><span class="p">(),</span><span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">sockaddr</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">remaddr</span><span class="p">),</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">remaddr</span><span class="p">))</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">0</span> <span class="p">)</span></span>
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389
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<pre style="margin: 0;">-<span id="LC389" class="line" lang="cpp"> <span class="p">{</span></span>
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390
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<pre style="margin: 0;">-<span id="LC390" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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391
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<pre style="margin: 0;">-<span id="LC391" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"connect() failed: "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">strerror</span><span class="p">(</span><span class="n" style="color: #333;">errno</span><span class="p">);</span></span>
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392
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<pre style="margin: 0;">-<span id="LC392" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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393
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<pre style="margin: 0;">-<span id="LC393" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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394
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<pre style="margin: 0;">-<span id="LC394" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC395" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC396" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC397" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">SocketBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">baseCast</span><span class="p">(</span><span class="n" style="color: #333;">ClientSocket</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">C</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC398" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC399" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">fd</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">C</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">getFD</span><span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC400" class="line" lang="cpp"> <span class="n" style="color: #333;">C</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">releaseFD</span><span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC401" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC402" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">try</span></span>
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<pre style="margin: 0;">-<span id="LC403" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC404" class="line" lang="cpp"> <span class="n" style="color: #333;">SocketBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">ptr</span> <span class="p">(</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">SocketBase</span><span class="p">(</span><span class="n" style="color: #333;">fd</span><span class="p">)</span> <span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC405" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">ptr</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC406" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC407" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">catch</span><span class="p">(...)</span></span>
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<pre style="margin: 0;">-<span id="LC408" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC409" class="line" lang="cpp"> <span class="n" style="color: #333;">close</span><span class="p">(</span><span class="n" style="color: #333;">fd</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC410" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC411" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC412" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC413" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC414" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">SocketBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">baseAlloc</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">port</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">hostname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC415" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC416" class="line" lang="cpp"> <span class="n" style="color: #333;">ClientSocket</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">ptr</span> <span class="p">(</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">ClientSocket</span><span class="p">(</span><span class="n" style="color: #333;">port</span><span class="p">,</span><span class="n" style="color: #333;">hostname</span><span class="p">)</span> <span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC417" class="line" lang="cpp"> <span class="n" style="color: #333;">SocketBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">baseptr</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">baseCast</span><span class="p">(</span><span class="n" style="color: #333;">ptr</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC418" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">baseptr</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC419" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC420" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC421" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">SocketBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">baseAlloc</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">port</span><span class="p">,</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">hostname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC422" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC423" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC424" class="line" lang="cpp"> <span class="n" style="color: #333;">SocketBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">baseptr</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">baseAlloc</span><span class="p">(</span><span class="n" style="color: #333;">port</span><span class="p">,</span><span class="n" style="color: #333;">hostname</span><span class="p">.</span><span class="n" style="color: #333;">c_str</span><span class="p">());</span></span>
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<pre style="margin: 0;">-<span id="LC425" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">baseptr</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC426" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC427" class="line" lang="cpp"> <span class="p">};</span></span>
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<pre style="margin: 0;">-<span id="LC428" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC429" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">ServerSocket</span> <span class="o" style="font-weight: 600;">:</span> <span class="k" style="font-weight: 600;">public</span> <span class="n" style="color: #333;">SocketBase</span></span>
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<pre style="margin: 0;">-<span id="LC430" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC431" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">typedef</span> <span class="n" style="color: #333;">ServerSocket</span> <span class="n" style="color: #333;">this_type</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC432" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">typedef</span> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">this_type</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">type</span> <span class="n" style="color: #333;">unique_ptr_type</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC433" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC434" class="line" lang="cpp"> <span class="n" style="color: #333;">sockaddr_in</span> <span class="n" style="color: #333;">recadr</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC435" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC436" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">getPort</span><span class="p">()</span> <span class="k" style="font-weight: 600;">const</span></span>
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<pre style="margin: 0;">-<span id="LC437" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC438" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">ntohs</span><span class="p">(</span><span class="n" style="color: #333;">recadr</span><span class="p">.</span><span class="n" style="color: #333;">sin_port</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC439" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC440" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC441" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">allocateServerSocket</span><span class="p">(</span></span>
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<pre style="margin: 0;">-<span id="LC442" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">port</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC443" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">backlog</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC444" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">hostname</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC445" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">tries</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC446" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC447" class="line" lang="cpp"> <span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">ptr</span><span class="p">(</span><span class="n" style="color: #333;">allocateServerSocket</span><span class="p">(</span><span class="n" style="color: #333;">port</span><span class="p">,</span><span class="n" style="color: #333;">backlog</span><span class="p">,</span><span class="n" style="color: #333;">hostname</span><span class="p">.</span><span class="n" style="color: #333;">c_str</span><span class="p">(),</span><span class="n" style="color: #333;">tries</span><span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC448" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">ptr</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC449" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC450" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC451" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static</span> <span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">allocateServerSocket</span><span class="p">(</span></span>
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<pre style="margin: 0;">-<span id="LC452" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">port</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC453" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">backlog</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC454" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">hostname</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC455" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">tries</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC456" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC457" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">for</span> <span class="p">(</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;">=</span> <span class="mi" style="color: #099;">0</span><span class="p">;</span> <span class="n" style="color: #333;">i</span> <span class="o" style="font-weight: 600;"><</span> <span class="n" style="color: #333;">tries</span><span class="p">;</span> <span class="o" style="font-weight: 600;">++</span><span class="n" style="color: #333;">i</span> <span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC458" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC459" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">try</span></span>
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<pre style="margin: 0;">-<span id="LC460" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC461" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">unique_ptr_type</span> <span class="p">(</span> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">this_type</span><span class="p">(</span><span class="n" style="color: #333;">port</span><span class="p">,</span><span class="n" style="color: #333;">backlog</span><span class="p">,</span><span class="n" style="color: #333;">hostname</span><span class="p">)</span> <span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC462" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC463" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">catch</span><span class="p">(</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">&</span> <span class="n" style="color: #333;">ex</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC464" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC465" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// std::cerr << ex.what() << std::endl;</span></span>
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<pre style="margin: 0;">-<span id="LC466" class="line" lang="cpp"> <span class="n" style="color: #333;">port</span><span class="o" style="font-weight: 600;">++</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC467" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC468" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC469" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC470" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">ex</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC471" class="line" lang="cpp"> <span class="n" style="color: #333;">ex</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"Failed to allocate ServerSocket (no ports available)"</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC472" class="line" lang="cpp"> <span class="n" style="color: #333;">ex</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC473" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">ex</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC474" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC475" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC476" class="line" lang="cpp"> <span class="n" style="color: #333;">ServerSocket</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">short</span> <span class="n" style="color: #333;">rport</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">backlog</span><span class="p">,</span> <span class="kt" style="color: #458; font-weight: 600;">char</span> <span class="k" style="font-weight: 600;">const</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">hostname</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC477" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">:</span> <span class="n" style="color: #333;">SocketBase</span><span class="p">()</span></span>
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<pre style="margin: 0;">-<span id="LC478" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC479" class="line" lang="cpp"> <span class="n" style="color: #333;">memset</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">recadr</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">recadr</span><span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC480" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC481" class="line" lang="cpp"> <span class="n" style="color: #333;">setAddress</span><span class="p">(</span><span class="n" style="color: #333;">hostname</span><span class="p">,</span> <span class="n" style="color: #333;">recadr</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC482" class="line" lang="cpp"> <span class="n" style="color: #333;">recadr</span><span class="p">.</span><span class="n" style="color: #333;">sin_port</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">htons</span><span class="p">(</span><span class="n" style="color: #333;">rport</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC483" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC484" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">bind</span> <span class="p">(</span> <span class="n" style="color: #333;">getFD</span><span class="p">(),</span> <span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">sockaddr</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">recadr</span><span class="p">),</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">recadr</span><span class="p">)</span> <span class="p">)</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">0</span> <span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC485" class="line" lang="cpp"> <span class="p">{</span></span>
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486
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<pre style="margin: 0;">-<span id="LC486" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">errno</span> <span class="o" style="font-weight: 600;">==</span> <span class="n" style="color: #333;">EADDRINUSE</span> <span class="p">)</span></span>
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487
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<pre style="margin: 0;">-<span id="LC487" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">runtime_error</span><span class="p">(</span><span class="s" style="color: #d14;">"bind: address is already in use."</span><span class="p">);</span></span>
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488
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<pre style="margin: 0;">-<span id="LC488" class="line" lang="cpp"></span>
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489
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<pre style="margin: 0;">-<span id="LC489" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// cleanup();</span></span>
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490
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<pre style="margin: 0;">-<span id="LC490" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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491
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<pre style="margin: 0;">-<span id="LC491" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"bind() failed: "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">strerror</span><span class="p">(</span><span class="n" style="color: #333;">errno</span><span class="p">);</span></span>
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492
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<pre style="margin: 0;">-<span id="LC492" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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493
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<pre style="margin: 0;">-<span id="LC493" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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494
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<pre style="margin: 0;">-<span id="LC494" class="line" lang="cpp"> <span class="p">}</span></span>
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495
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<pre style="margin: 0;">-<span id="LC495" class="line" lang="cpp"></span>
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496
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<pre style="margin: 0;">-<span id="LC496" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">listen</span> <span class="p">(</span> <span class="n" style="color: #333;">getFD</span><span class="p">(),</span> <span class="n" style="color: #333;">backlog</span> <span class="p">)</span> <span class="o" style="font-weight: 600;">!=</span> <span class="mi" style="color: #099;">0</span> <span class="p">)</span></span>
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497
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<pre style="margin: 0;">-<span id="LC497" class="line" lang="cpp"> <span class="p">{</span></span>
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498
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<pre style="margin: 0;">-<span id="LC498" class="line" lang="cpp"> <span class="c1" style="color: #998; font-style: italic;">// cleanup();</span></span>
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499
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<pre style="margin: 0;">-<span id="LC499" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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500
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<pre style="margin: 0;">-<span id="LC500" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"listen() failed: "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">strerror</span><span class="p">(</span><span class="n" style="color: #333;">errno</span><span class="p">);</span></span>
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501
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<pre style="margin: 0;">-<span id="LC501" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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502
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<pre style="margin: 0;">-<span id="LC502" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC503" class="line" lang="cpp"> <span class="p">}</span></span>
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504
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<pre style="margin: 0;">-<span id="LC504" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC505" class="line" lang="cpp"></span>
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506
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<pre style="margin: 0;">-<span id="LC506" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">~</span><span class="n" style="color: #333;">ServerSocket</span><span class="p">()</span></span>
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<pre style="margin: 0;">-<span id="LC507" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC508" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC509" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC510" class="line" lang="cpp"> <span class="n" style="color: #333;">SocketBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">accept</span><span class="p">()</span></span>
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<pre style="margin: 0;">-<span id="LC511" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC512" class="line" lang="cpp"> <span class="n" style="color: #333;">sockaddr_in</span> <span class="n" style="color: #333;">aadr</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC513" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC514" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#if defined(LIBMAUS2_HAVE_SOCKLEN_T)</span></span>
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<pre style="margin: 0;">-<span id="LC515" class="line" lang="cpp"> <span class="n" style="color: #333;">socklen_t</span></span>
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<pre style="margin: 0;">-<span id="LC516" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#else</span></span>
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<pre style="margin: 0;">-<span id="LC517" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span></span>
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<pre style="margin: 0;">-<span id="LC518" class="line" lang="cpp"> <span class="cp" style="color: #999; font-weight: 600;">#endif</span></span>
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<pre style="margin: 0;">-<span id="LC519" class="line" lang="cpp"> <span class="n" style="color: #333;">len</span> <span class="o" style="font-weight: 600;">=</span> <span class="k" style="font-weight: 600;">sizeof</span><span class="p">(</span><span class="n" style="color: #333;">aadr</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC520" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC521" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="n" style="color: #333;">afd</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">accept</span><span class="p">(</span><span class="n" style="color: #333;">getFD</span><span class="p">(),</span><span class="k" style="font-weight: 600;">reinterpret_cast</span><span class="o" style="font-weight: 600;"><</span><span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">sockaddr</span> <span class="o" style="font-weight: 600;">*></span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">aadr</span><span class="p">),</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">len</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC522" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC523" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">afd</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">0</span> <span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC524" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC525" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC526" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"accept() failed: "</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">strerror</span><span class="p">(</span><span class="n" style="color: #333;">errno</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC527" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC528" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC529" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC530" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">-<span id="LC531" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC532" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">SocketBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span><span class="p">(</span><span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">SocketBase</span><span class="p">(</span><span class="n" style="color: #333;">afd</span><span class="p">,</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">aadr</span><span class="p">));</span></span>
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<pre style="margin: 0;">-<span id="LC533" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC534" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC535" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC536" class="line" lang="cpp"> <span class="n" style="color: #333;">SocketBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">shared_ptr_type</span> <span class="n" style="color: #333;">acceptShared</span><span class="p">()</span></span>
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<pre style="margin: 0;">-<span id="LC537" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC538" class="line" lang="cpp"> <span class="n" style="color: #333;">SocketBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">uptr</span><span class="p">(</span><span class="n" style="color: #333;">accept</span><span class="p">());</span></span>
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<pre style="margin: 0;">-<span id="LC539" class="line" lang="cpp"> <span class="n" style="color: #333;">SocketBase</span> <span class="o" style="font-weight: 600;">*</span> <span class="n" style="color: #333;">ptr</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">uptr</span><span class="p">.</span><span class="n" style="color: #333;">release</span><span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC540" class="line" lang="cpp"> <span class="n" style="color: #333;">SocketBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">shared_ptr_type</span> <span class="n" style="color: #333;">sptr</span><span class="p">(</span><span class="n" style="color: #333;">ptr</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC541" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="n" style="color: #333;">sptr</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC542" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC543" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC544" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">bool</span> <span class="n" style="color: #333;">waitForConnection</span><span class="p">(</span><span class="kt" style="color: #458; font-weight: 600;">unsigned</span> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">t</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC545" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC546" class="line" lang="cpp"> <span class="n" style="color: #333;">fd_set</span> <span class="n" style="color: #333;">fds</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC547" class="line" lang="cpp"> <span class="n" style="color: #333;">FD_ZERO</span><span class="p">(</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">fds</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC548" class="line" lang="cpp"> <span class="n" style="color: #333;">FD_SET</span><span class="p">(</span><span class="n" style="color: #333;">getFD</span><span class="p">(),</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">fds</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC549" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">timeval</span> <span class="n" style="color: #333;">timeout</span> <span class="o" style="font-weight: 600;">=</span> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC550" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static_cast</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">long</span><span class="o" style="font-weight: 600;">></span><span class="p">(</span><span class="n" style="color: #333;">t</span><span class="p">),</span></span>
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<pre style="margin: 0;">-<span id="LC551" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">static_cast</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">long</span><span class="o" style="font-weight: 600;">></span><span class="p">(</span><span class="mi" style="color: #099;">0</span><span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC552" class="line" lang="cpp"> <span class="p">};</span></span>
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<pre style="margin: 0;">-<span id="LC553" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC554" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">=</span> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">select</span><span class="p">(</span><span class="n" style="color: #333;">getFD</span><span class="p">()</span><span class="o" style="font-weight: 600;">+</span><span class="mi" style="color: #099;">1</span><span class="p">,</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">fds</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="mi" style="color: #099;">0</span><span class="p">,</span><span class="o" style="font-weight: 600;">&</span><span class="n" style="color: #333;">timeout</span><span class="p">);</span></span>
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<pre style="margin: 0;">-<span id="LC555" class="line" lang="cpp"></span>
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<pre style="margin: 0;">-<span id="LC556" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;"><</span> <span class="mi" style="color: #099;">0</span> <span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC557" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC558" class="line" lang="cpp"> <span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">exception</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">LibMausException</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC559" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">getStream</span><span class="p">()</span> <span class="o" style="font-weight: 600;"><<</span> <span class="s" style="color: #d14;">"select failed on socket."</span> <span class="o" style="font-weight: 600;"><<</span> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">endl</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC560" class="line" lang="cpp"> <span class="n" style="color: #333;">se</span><span class="p">.</span><span class="n" style="color: #333;">finish</span><span class="p">();</span></span>
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<pre style="margin: 0;">-<span id="LC561" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">throw</span> <span class="n" style="color: #333;">se</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC562" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC563" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span> <span class="k" style="font-weight: 600;">if</span> <span class="p">(</span> <span class="n" style="color: #333;">r</span> <span class="o" style="font-weight: 600;">==</span> <span class="mi" style="color: #099;">0</span> <span class="p">)</span></span>
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<pre style="margin: 0;">-<span id="LC564" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC565" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">false</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC566" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC567" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">else</span></span>
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<pre style="margin: 0;">-<span id="LC568" class="line" lang="cpp"> <span class="p">{</span></span>
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<pre style="margin: 0;">-<span id="LC569" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">return</span> <span class="nb" style="color: #0086b3;">true</span><span class="p">;</span></span>
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<pre style="margin: 0;">-<span id="LC570" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC571" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;">-<span id="LC572" class="line" lang="cpp"> <span class="p">};</span></span>
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<pre style="margin: 0;"> <span id="LC395" class="line" lang="cpp"> <span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC396" class="line" lang="cpp"><span class="p">}</span></span>
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<pre style="margin: 0;"> <span id="LC397" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#endif</span></span></pre>
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<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#e9467faf74358067a78d4515df3859162628f451"><strong>src/libmaus2/network/SocketInputStreamBuffer.hpp</strong></a>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <streambuf></span></span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <istream></span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/network/Socket.hpp></span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/network/Socket<span class="idiff left right">InputOutputInterface</span>.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="cpp"><span class="k" style="font-weight: 600;">namespace</span> <span class="n" style="color: #333;">libmaus2</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="cpp"><span class="p">{</span></span>
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<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#50963370a464f7667acff79c58f4d9eeb1bed5aa"><strong>src/libmaus2/rank/ImpCacheLineRank.hpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -25,7 +25,6 @@</td>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/select/ESelectBase.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/bitio/getBit.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/aio/SynchronousGenericOutput.hpp></span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/network/Socket.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="cpp"><span class="k" style="font-weight: 600;">namespace</span> <span class="n" style="color: #333;">libmaus2</span></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="cpp"><span class="p">{</span></span>
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<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#43d7da2f721ade5fbfc0bfa4716d6b3e71194453"><strong>src/libmaus2/suffixsort/SkewSuffixSort.hpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -23,7 +23,6 @@</td>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/autoarray/AutoArray.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/aio/SynchronousGenericInput.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/aio/SynchronousGenericOutput.hpp></span></span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/aio/OutputBuffer8.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/util/GetFileSize.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <limits></span></span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="cpp"></span>
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<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#83f5d3ceaccb726789ffebc5b84875b5649986fd"><strong>src/test/testfqbgzf.cpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -21,8 +21,6 @@</td>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/lz/BgzfDeflateParallel.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/util/TempFileRemovalContainer.hpp></span></span>
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23
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/fastx/StreamFastQReader.hpp></span></span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/network/Socket.hpp></span></span>
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="cpp"><span class="cp" style="color: #999; font-weight: 600;">#include <libmaus2/network/SocketInputStream.hpp></span></span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="cpp"><span class="k" style="font-weight: 600;">struct</span> <span class="n" style="color: #333;">PatternBuffer</span> <span class="o" style="font-weight: 600;">:</span> <span class="k" style="font-weight: 600;">public</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">util</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">PushBuffer</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">fastx</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">StreamFastQReader</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">pattern_type</span><span class="o" style="font-weight: 600;">></span></span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="cpp"><span class="p">{</span></span>
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<a href="https://salsa.debian.org/med-team/libmaus2/commit/f9353a7e6bc7ae75a85377db3005b6f5e171c109#0a113889f0754a0223fa3ff51f95fdc5e044bca7"><strong>src/test/testparallelbamblocksort.cpp</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -88,6 +88,7 @@ int parallelbamblocksort(libmaus2::util::ArgInfo const & arginfo,</td>
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<pre style="margin: 0;"> <span id="LC88" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">int</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">templevel</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">arginfo</span><span class="p">.</span><span class="n" style="color: #333;">getValue</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">int</span><span class="o" style="font-weight: 600;">></span><span class="p">(</span><span class="s" style="color: #d14;">"level"</span><span class="p">,</span><span class="mi" style="color: #099;">1</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">hash</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">arginfo</span><span class="p">.</span><span class="n" style="color: #333;">getValue</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span><span class="o" style="font-weight: 600;">></span><span class="p">(</span><span class="s" style="color: #d14;">"hash"</span><span class="p">,</span><span class="s" style="color: #d14;">"crc32prod"</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">filehash</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">arginfo</span><span class="p">.</span><span class="n" style="color: #333;">getValue</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span><span class="o" style="font-weight: 600;">></span><span class="p">(</span><span class="s" style="color: #d14;">"filehash"</span><span class="p">,</span><span class="s" style="color: #d14;">"md5"</span><span class="p">);</span></span>
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<pre style="margin: 0;">+<span id="LC91" class="line" lang="cpp"> <span class="kt" style="color: #458; font-weight: 600;">uint64_t</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">fragmergepar</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">arginfo</span><span class="p">.</span><span class="n" style="color: #333;">getValue</span><span class="o" style="font-weight: 600;"><</span><span class="kt" style="color: #458; font-weight: 600;">uint64_t</span><span class="o" style="font-weight: 600;">></span><span class="p">(</span><span class="s" style="color: #d14;">"fragmergepar"</span><span class="p">,</span><span class="n" style="color: #333;">numlogcpus</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC92" class="line" lang="cpp"></span>
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<pre style="margin: 0;"> <span id="LC93" class="line" lang="cpp"> <span class="n" style="color: #333;">std</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">string</span> <span class="k" style="font-weight: 600;">const</span> <span class="n" style="color: #333;">sinputformat</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">arginfo</span><span class="p">.</span><span class="n" style="color: #333;">getUnparsedValue</span><span class="p">(</span><span class="s" style="color: #d14;">"inputformat"</span><span class="p">,</span><span class="s" style="color: #d14;">"bam"</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC94" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bambam</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">BlockSortControlBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">block_sort_control_input_enum</span> <span class="n" style="color: #333;">inform</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bambam</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">BlockSortControlBase</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">block_sort_control_input_bam</span><span class="p">;</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -111,7 +112,7 @@ int parallelbamblocksort(libmaus2::util::ArgInfo const & arginfo,</td>
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<pre style="margin: 0;"> <span id="LC112" class="line" lang="cpp"> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">SimpleThreadPool</span> <span class="n" style="color: #333;">STP</span><span class="p">(</span><span class="n" style="color: #333;">numlogcpus</span><span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC113" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">typename</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bambam</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">BlockSortControl</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">order_type</span><span class="p">,</span><span class="n" style="color: #333;">create_dup_mark_info</span><span class="o" style="font-weight: 600;">>::</span><span class="n" style="color: #333;">unique_ptr_type</span> <span class="n" style="color: #333;">VC</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC114" class="line" lang="cpp"> <span class="k" style="font-weight: 600;">new</span> <span class="n" style="color: #333;">libmaus2</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">bambam</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">parallel</span><span class="o" style="font-weight: 600;">::</span><span class="n" style="color: #333;">BlockSortControl</span><span class="o" style="font-weight: 600;"><</span><span class="n" style="color: #333;">order_type</span><span class="p">,</span><span class="n" style="color: #333;">create_dup_mark_info</span><span class="o" style="font-weight: 600;">></span><span class="p">(</span></span>
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<pre style="margin: 0;">-<span id="LC114" class="line" lang="cpp"> <span class="n" style="color: #333;">inform</span><span class="p">,</span><span class="n" style="color: #333;">STP</span><span class="p">,</span><span class="n" style="color: #333;">in</span><span class="p">,</span><span class="n" style="color: #333;">templevel</span><span class="p">,</span><span class="n" style="color: #333;">tmpfilebase</span><span class="p">,</span><span class="n" style="color: #333;">hash</span><span class="p">,</span><span class="n" style="color: #333;">fixmates</span><span class="p">,</span><span class="n" style="color: #333;">dupmarksupport</span></span>
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="cpp"> <span class="n" style="color: #333;">inform</span><span class="p">,</span><span class="n" style="color: #333;">STP</span><span class="p">,</span><span class="n" style="color: #333;">in</span><span class="p">,</span><span class="n" style="color: #333;">templevel</span><span class="p">,</span><span class="n" style="color: #333;"><span class="idiff left">fragmergepar</span></span><span class="p"><span class="idiff right">,</span></span><span class="n" style="color: #333;">tmpfilebase</span><span class="p">,</span><span class="n" style="color: #333;">hash</span><span class="p">,</span><span class="n" style="color: #333;">fixmates</span><span class="p">,</span><span class="n" style="color: #333;">dupmarksupport</span></span>
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<pre style="margin: 0;"> <span id="LC116" class="line" lang="cpp"> <span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC117" class="line" lang="cpp"> <span class="p">);</span></span>
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<pre style="margin: 0;"> <span id="LC118" class="line" lang="cpp"> <span class="n" style="color: #333;">VC</span><span class="o" style="font-weight: 600;">-></span><span class="n" style="color: #333;">enqueReadPackage</span><span class="p">();</span></span>
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