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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/libbpp-phyl">Debian Med / libbpp-phyl</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libbpp-phyl/commit/0d24b9727a94be37b2a51caa8acc46a09d0dba6d">0d24b972</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-08-20T15:34:09Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Adapt symbols to new gcc version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libbpp-phyl/commit/f17718e6d7266e90e0ba49c3c6801785ba8f1d9a">f17718e6</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-08-20T16:13:49Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper-compat 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libbpp-phyl/commit/a10bb4361844cfce76bdc8becb9a4e83dbb018b2">a10bb436</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-08-20T16:13:51Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.4.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libbpp-phyl/commit/dd31e26ce91b4335ddb5e5285c07693334464365">dd31e26c</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-08-20T16:22:22Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Upload to unstable
</pre>
</li>
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
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</a>
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<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<li class="file-stats">
<a href="#12fd29a7daadd9b128d13ddae917bf7a78a15ec4">
debian/libbpp-phyl12.symbols.amd64
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/libbpp-phyl/compare/2522808773c2d954e1942377ed0247930646e665...dd31e26ce91b4335ddb5e5285c07693334464365#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">libbpp-phyl (2.4.1-3) <span class="idiff left right">UNRELEASED</span>; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">libbpp-phyl (2.4.1-3) <span class="idiff left right">unstable</span>; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> [ Julien Dutheil ]</span>
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<td class="diff-line-num new_line" data-linenumber="4" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> * Remove test that causes random failures</span>
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<td class="diff-line-num new_line" data-linenumber="5" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext"> -- Julien Dutheil <julien.dutheil@univ-montp2.fr> Tue, 12 Mar 2019 15:14:18 +0100</span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> [ Andreas Tille ]</span>
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<td class="diff-line-num new new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> * Adapt symbols to new gcc version</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext"> Closes: #925732</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> * debhelper-compat 12</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> * Standards-Version: 4.4.0</span>
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<td class="diff-line-num new new_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext"> -- Andreas Tille <tille@debian.org> Tue, 20 Aug 2019 18:13:57 +0200</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">libbpp-phyl (2.4.1-2) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="plaintext"></span>
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<li id="78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<a href="https://salsa.debian.org/med-team/libbpp-phyl/compare/2522808773c2d954e1942377ed0247930646e665...dd31e26ce91b4335ddb5e5285c07693334464365#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4"><strong>debian/compat</strong>
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">11</span></pre>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/libbpp-phyl/compare/2522808773c2d954e1942377ed0247930646e665...dd31e26ce91b4335ddb5e5285c07693334464365#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4,11 +4,11 @@ Uploaders: Julien Dutheil <julien.dutheil@univ-montp2.fr>,</td>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> Andreas Tille <tille@debian.org></span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right"> (>= 11~</span>),</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext">Build-Depends: debhelper<span class="idiff left right">-compat (= 12</span>),</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext"> cmake,</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"> d-shlibs (>= 0.82),</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> libbpp-seq-dev (>= 2.4.1)</span>
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11
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">3</span>.0</span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext">Standards-Version: 4.<span class="idiff left right">4</span>.0</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">Vcs-Browser: https://salsa.debian.org/med-team/libbpp-phyl</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">Vcs-Git: https://salsa.debian.org/med-team/libbpp-phyl.git</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext">Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -19,7 +19,7 @@ Multi-Arch: same</td>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Section: libdevel</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">Depends: libbpp-phyl12 (= ${binary:Version}),</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"><span class="idiff left right"> </span> ${devlibs:Depends},</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"><span class="idiff left right"> </span> ${devlibs:Depends},</span>
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<td class="diff-line-num old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> libbpp-seq-dev (>= 2.4.1)</span>
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<td class="diff-line-num old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext">Description: Bio++ Phylogenetic library development files</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> Bio++ is a set of C++ libraries for Bioinformatics, including sequence</span>
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<li id="12fd29a7daadd9b128d13ddae917bf7a78a15ec4">
<a href="https://salsa.debian.org/med-team/libbpp-phyl/compare/2522808773c2d954e1942377ed0247930646e665...dd31e26ce91b4335ddb5e5285c07693334464365#12fd29a7daadd9b128d13ddae917bf7a78a15ec4"><strong>debian/libbpp-phyl12.symbols.amd64</strong></a>
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<pre style="margin: 0;"> <span id="LC1" class="line" lang="plaintext">libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</span>
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext"> _ZN3bpp10BppBooleanD0Ev@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext"> _ZN3bpp10BppBooleanD1Ev@Base 2.4.1</span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> _ZN3bpp10EigenValueIdE4cdivEdddd@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext"> _ZN3bpp10EigenValueIdE4hqr2Ev@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext"> _ZN3bpp10EigenValueIdE4tql2Ev@Base 2.4.1</span>
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6
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext"> _ZN3bpp10EigenValueIdE5tred2Ev@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -21,17 +20,13 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext"> _ZN3bpp11LG10_EX_EHOC2EPKNS_15ProteicAlphabetE@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext"> _ZN3bpp11LG10_EX_EHOD0Ev@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="plaintext"> _ZN3bpp11LG10_EX_EHOD1Ev@Base 2.4.1</span>
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> _ZN3bpp11MatrixTools13kroneckerMultIdEEvRKNS_6MatrixIT_EES6_RS4_b@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC23" class="line" lang="plaintext"> _ZN3bpp11MatrixTools3addINS_9RowMatrixIdEES3_EEvRT_RKT0_@Base 2.4.1</span>
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext"> _ZN3bpp11MatrixTools3addINS_9RowMatrixIdEES3_dEEvRT_RT1_RKT0_@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC24" class="line" lang="plaintext"> _ZN3bpp11MatrixTools3powINS_9RowMatrixIdEEEEvRKT_mRS4_@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext"> _ZN3bpp11MatrixTools4copyINS_9RowMatrixIdEES3_EEvRKT_RT0_@Base 2.4.1</span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> _ZN3bpp11MatrixTools4multIdEEvRKNS_6MatrixIT_EERKSt6vectorIS3_SaIS3_EES6_RS4_@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext"> _ZN3bpp11MatrixTools4multIdEEvRKNS_6MatrixIT_EES6_RS4_@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext"> _ZN3bpp11MatrixTools5getIdINS_9RowMatrixIdEEEEvmRT_@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext"> _ZN3bpp11MatrixTools5printINS_6MatrixIdEEEEvRKT_RSo@Base 2.4.1</span>
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> _ZN3bpp11MatrixTools5scaleINS_9RowMatrixIdEEdEEvRT_T0_S6_@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="plaintext"> _ZN3bpp11MatrixTools6TaylorINS_9RowMatrixIdEEdEEvRKT_mRSt6vectorINS2_IT0_EESaIS9_EE@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> _ZN3bpp11NaNListener25optimizationStepPerformedERKNS_17OptimizationEventE@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> _ZN3bpp11NaNListener35optimizationInitializationPerformedERKNS_17OptimizationEventE@Base 2.4.1</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -44,19 +39,14 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<pre style="margin: 0;"> <span id="LC39" class="line" lang="plaintext"> _ZN3bpp11RE08ProteinD0Ev@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="plaintext"> _ZN3bpp11VectorTools16haveSameElementsINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEbRKSt6vectorIT_SaIS9_EESD_@Base 2.4.1</span>
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="plaintext"> _ZN3bpp11VectorTools18vectorIntersectionIiEESt6vectorIT_SaIS3_EERKS5_S7_@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="plaintext"> _ZN3bpp11VectorTools4diffINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEvRSt6vectorIT_SaIS9_EESC_SC_@Base 2.4.1</span>
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<pre style="margin: 0;">-<span id="LC49" class="line" lang="plaintext"> _ZN3bpp11VectorTools6extendINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEEvRSt6vectorIT_SaIS9_EERKSB_@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="plaintext"> _ZN3bpp11VectorTools7resize3ERSt6vectorIS1_IS1_IdSaIdEESaIS3_EESaIS5_EEmmm@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="plaintext"> _ZN3bpp11VectorTools8whichAllIiEESt6vectorImSaImEERKS2_IT_SaIS5_EERKS5_@Base 2.4.1</span>
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<pre style="margin: 0;">-<span id="LC52" class="line" lang="plaintext"> _ZN3bpp11VectorTools8whichMaxIdEEmRKSt6vectorIT_SaIS3_EE@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="plaintext"> _ZN3bpp12LinearMatrixIdE6resizeEmm@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="plaintext"> _ZN3bpp12LinearMatrixIdED0Ev@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="plaintext"> _ZN3bpp12LinearMatrixIdED1Ev@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC48" class="line" lang="plaintext"> _ZN3bpp12LinearMatrixIdED2Ev@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="plaintext"> _ZN3bpp12LinearMatrixIdEclEmm@Base 2.4.1</span>
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<pre style="margin: 0;">-<span id="LC58" class="line" lang="plaintext"> _ZN3bpp12MutationPathC1ERKS0_@Base 2.4.1</span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="plaintext"> _ZN3bpp12MutationPathC2ERKS0_@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="plaintext"> _ZN3bpp12MutationPathD0Ev@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="plaintext"> _ZN3bpp12MutationPathD1Ev@Base 2.4.1</span>
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52
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<pre style="margin: 0;"> <span id="LC52" class="line" lang="plaintext"> _ZN3bpp12MutationPathD2Ev@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="310" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -310,7 +300,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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310
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300
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<pre style="margin: 0;"> <span id="LC300" class="line" lang="plaintext"> _ZN3bpp14BackupListenerD2Ev@Base 2.4.1</span>
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311
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<pre style="margin: 0;"> <span id="LC301" class="line" lang="plaintext"> _ZN3bpp14DistanceMatrix6resizeEm@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC302" class="line" lang="plaintext"> _ZN3bpp14DistanceMatrix8asMatrixEv@Base 2.4.1</span>
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<pre style="margin: 0;">-<span id="LC313" class="line" lang="plaintext"> _ZN3bpp14DistanceMatrixC1Em@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC303" class="line" lang="plaintext"> _ZN3bpp14DistanceMatrixD0Ev@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC304" class="line" lang="plaintext"> _ZN3bpp14DistanceMatrixD1Ev@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC305" class="line" lang="plaintext"> _ZN3bpp14DistanceMatrixclERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="328" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="317" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -328,7 +317,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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328
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<pre style="margin: 0;"> <span id="LC317" class="line" lang="plaintext"> _ZN3bpp14RE08NucleotideC1EPNS_37NucleotideReversibleSubstitutionModelEdd@Base 2.4.1</span>
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329
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318
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<pre style="margin: 0;"> <span id="LC318" class="line" lang="plaintext"> _ZN3bpp14RE08NucleotideD0Ev@Base 2.4.1</span>
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330
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319
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<pre style="margin: 0;"> <span id="LC319" class="line" lang="plaintext"> _ZN3bpp14RE08NucleotideD1Ev@Base 2.4.1</span>
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331
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<pre style="margin: 0;">-<span id="LC331" class="line" lang="plaintext"> _ZN3bpp14TreeLikelihoodC2Ev@Base 2.4.1</span>
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332
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320
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<pre style="margin: 0;"> <span id="LC320" class="line" lang="plaintext"> _ZN3bpp14TreeLikelihoodD2Ev@Base 2.4.1</span>
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333
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321
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<pre style="margin: 0;"> <span id="LC321" class="line" lang="plaintext"> _ZN3bpp15AbstractMapping15setSitePositionEmi@Base 2.4.1</span>
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334
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322
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<pre style="margin: 0;"> <span id="LC322" class="line" lang="plaintext"> _ZN3bpp15AbstractMapping16setNumberOfSitesEm@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="402" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="390" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -402,7 +390,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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402
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390
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<pre style="margin: 0;"> <span id="LC390" class="line" lang="plaintext"> _ZN3bpp15VectorExceptionImED0Ev@Base 2.4.1</span>
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391
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<pre style="margin: 0;"> <span id="LC391" class="line" lang="plaintext"> _ZN3bpp15VectorExceptionImED1Ev@Base 2.4.1</span>
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404
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392
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<pre style="margin: 0;"> <span id="LC392" class="line" lang="plaintext"> _ZN3bpp15VectorExceptionImED2Ev@Base 2.4.1</span>
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<pre style="margin: 0;">-<span id="LC405" class="line" lang="plaintext"> _ZN3bpp16AbstractAlphabetD2Ev@Base 2.4.1</span>
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393
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<pre style="margin: 0;"> <span id="LC393" class="line" lang="plaintext"> _ZN3bpp16AbstractCoreSite11setPositionEi@Base 2.4.1</span>
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407
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394
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<pre style="margin: 0;"> <span id="LC394" class="line" lang="plaintext"> _ZN3bpp16AbstractStateMapD2Ev@Base 2.4.1</span>
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408
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395
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<pre style="margin: 0;"> <span id="LC395" class="line" lang="plaintext"> _ZN3bpp16ApplicationTools12getParameterIjEET_RKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3mapIS8_S8_St4lessIS8_ESaISt4pairIS9_S8_EEES2_SA_bi@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="412" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="399" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -412,9 +399,11 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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412
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399
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<pre style="margin: 0;"> <span id="LC399" class="line" lang="plaintext"> _ZN3bpp16ApplicationTools13displayResultIdEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKT_@Base 2.4.1</span>
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413
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400
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<pre style="margin: 0;"> <span id="LC400" class="line" lang="plaintext"> _ZN3bpp16ApplicationTools13displayResultIjEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKT_@Base 2.4.1</span>
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414
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401
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<pre style="margin: 0;"> <span id="LC401" class="line" lang="plaintext"> _ZN3bpp16ApplicationTools13displayResultImEEvRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKT_@Base 2.4.1</span>
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<pre style="margin: 0;">-<span id="LC415" class="line" lang="plaintext"> _ZN3bpp16ApplicationTools15parameterExistsERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3mapIS6_S6_St4lessIS6_ESaISt4pairIS7_S6_EEE@Base 2.4.1</span>
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402
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<pre style="margin: 0;"> <span id="LC402" class="line" lang="plaintext"> _ZN3bpp16ApplicationTools18getStringParameterERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3mapIS6_S6_St4lessIS6_ESaISt4pairIS7_S6_EEES8_S8_bi@Base 2.4.1</span>
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417
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403
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<pre style="margin: 0;"> <span id="LC403" class="line" lang="plaintext"> _ZN3bpp16ApplicationTools18getVectorParameterIiEESt6vectorIT_SaIS3_EERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEERKSt3mapISB_SB_St4lessISB_ESaISt4pairISC_SB_EEEccSD_SD_bb@Base 2.4.1</span>
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404
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<pre style="margin: 0;">+<span id="LC404" class="line" lang="plaintext"> _ZN3bpp16BadCharExceptionD0Ev@Base 2.4.1</span>
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<pre style="margin: 0;">+<span id="LC405" class="line" lang="plaintext"> _ZN3bpp16BadCharExceptionD1Ev@Base 2.4.1</span>
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406
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<pre style="margin: 0;">+<span id="LC406" class="line" lang="plaintext"> _ZN3bpp16BadCharExceptionD2Ev@Base 2.4.1</span>
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418
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<td class="diff-line-num new_line" data-linenumber="407" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
407
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<pre style="margin: 0;"> <span id="LC407" class="line" lang="plaintext"> _ZN3bpp16BipartitionTools12areIdenticalERKNS_15BipartitionListEmS3_mb@Base 2.4.1</span>
</pre>
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419
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<td class="diff-line-num new_line" data-linenumber="408" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
408
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<pre style="margin: 0;"> <span id="LC408" class="line" lang="plaintext"> _ZN3bpp16BipartitionTools13areCompatibleERKNS_15BipartitionListEmS3_mb@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
420
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<td class="diff-line-num new_line" data-linenumber="409" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
409
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<pre style="margin: 0;"> <span id="LC409" class="line" lang="plaintext"> _ZN3bpp16BipartitionTools19MRPEncodeMultilabelERKSt6vectorIPNS_15BipartitionListESaIS3_EE@Base 2.4.1</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="556" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="545" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -556,7 +545,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="556" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
556
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545
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<pre style="margin: 0;"> <span id="LC545" class="line" lang="plaintext"> _ZN3bpp17TreeTemplateTools13hasNodeWithIdINS_12NodeTemplateINS_7SimDataEEEEEbRKT_i@Base 2.4.1</span>
</pre>
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557
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546
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<pre style="margin: 0;"> <span id="LC546" class="line" lang="plaintext"> _ZN3bpp17TreeTemplateTools13hasNodeWithIdINS_12NodeTemplateINS_9PGMAInfosEEEEEbRKT_i@Base 2.4.1</span>
</pre>
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558
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<td class="diff-line-num new_line" data-linenumber="547" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
547
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<pre style="margin: 0;"> <span id="LC547" class="line" lang="plaintext"> _ZN3bpp17TreeTemplateTools13hasNodeWithIdINS_4NodeEEEbRKT_i@Base 2.4.1</span>
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559
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<pre style="margin: 0;">-<span id="LC559" class="line" lang="plaintext"> _ZN3bpp17TreeTemplateTools14getAncestorsIdERKNS_4NodeE@Base 2.4.1</span>
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560
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548
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<pre style="margin: 0;"> <span id="LC548" class="line" lang="plaintext"> _ZN3bpp17TreeTemplateTools14getLeavesNamesB5cxx11ERKNS_4NodeE@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="561" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
561
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549
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<pre style="margin: 0;"> <span id="LC549" class="line" lang="plaintext"> _ZN3bpp17TreeTemplateTools14getTotalLengthERKNS_4NodeEb@Base 2.4.1</span>
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562
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550
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<pre style="margin: 0;"> <span id="LC550" class="line" lang="plaintext"> _ZN3bpp17TreeTemplateTools15getInnerNodesIdERKNS_4NodeERSt6vectorIiSaIiEE@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="631" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="619" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -631,7 +619,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="631" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
631
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619
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<pre style="margin: 0;"> <span id="LC619" class="line" lang="plaintext"> _ZN3bpp17TreeTemplateTools8getNodesINS_4NodeEEEvRT_RSt6vectorIPS3_SaIS6_EE@Base 2.4.1</span>
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632
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620
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<pre style="margin: 0;"> <span id="LC620" class="line" lang="plaintext"> _ZN3bpp17TreeTemplateTools9getDepthsERKNS_4NodeERSt3mapIPS2_jSt4lessIS5_ESaISt4pairIKS5_jEEE@Base 2.4.1</span>
</pre>
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633
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621
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<pre style="margin: 0;"> <span id="LC621" class="line" lang="plaintext"> _ZN3bpp17TreeTemplateTools9getHeightERKNS_4NodeE@Base 2.4.1</span>
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634
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<pre style="margin: 0;">-<span id="LC634" class="line" lang="plaintext"> _ZN3bpp17TreeTemplateTools9getLeafIdERKNS_4NodeERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1</span>
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635
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622
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<pre style="margin: 0;"> <span id="LC622" class="line" lang="plaintext"> _ZN3bpp17TreeTemplateTools9getLeavesIKNS_12NodeTemplateINS_12ClusterInfosEEEEEvRT_RSt6vectorIPS6_SaIS9_EE@Base 2.4.1</span>
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636
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623
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<pre style="margin: 0;"> <span id="LC623" class="line" lang="plaintext"> _ZN3bpp17TreeTemplateTools9getLeavesIKNS_12NodeTemplateINS_19TreeDrawingNodeInfoEEEEEvRT_RSt6vectorIPS6_SaIS9_EE@Base 2.4.1</span>
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637
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624
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<pre style="margin: 0;"> <span id="LC624" class="line" lang="plaintext"> _ZN3bpp17TreeTemplateTools9getLeavesIKNS_12NodeTemplateINS_7SimDataEEEEEvRT_RSt6vectorIPS6_SaIS9_EE@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="685" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="672" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -685,7 +672,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="685" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
685
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672
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<pre style="margin: 0;"> <span id="LC672" class="line" lang="plaintext"> _ZN3bpp18FullFrequenciesSetC2EPNS_8StateMapEbtRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1</span>
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686
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673
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<pre style="margin: 0;"> <span id="LC673" class="line" lang="plaintext"> _ZN3bpp18FullFrequenciesSetD0Ev@Base 2.4.1</span>
</pre>
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687
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674
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<pre style="margin: 0;"> <span id="LC674" class="line" lang="plaintext"> _ZN3bpp18FullFrequenciesSetD1Ev@Base 2.4.1</span>
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688
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<pre style="margin: 0;">-<span id="LC688" class="line" lang="plaintext"> _ZN3bpp18IntervalConstraint15readDescriptionERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1</span>
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689
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675
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<pre style="margin: 0;"> <span id="LC675" class="line" lang="plaintext"> _ZN3bpp18IntervalConstraintD0Ev@Base 2.4.1</span>
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690
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676
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<pre style="margin: 0;"> <span id="LC676" class="line" lang="plaintext"> _ZN3bpp18IntervalConstraintD1Ev@Base 2.4.1</span>
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691
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677
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<pre style="margin: 0;"> <span id="LC677" class="line" lang="plaintext"> _ZN3bpp18IntervalConstraintD2Ev@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="772" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="758" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -772,7 +758,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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772
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758
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<pre style="margin: 0;"> <span id="LC758" class="line" lang="plaintext"> _ZN3bpp19TreeLikelihoodTools24getAncestralFrequencies_ERKNS_14TreeLikelihoodEmiRKSt6vectorIdSaIdEERSt3mapIiS6_St4lessIiESaISt4pairIKiS6_EEEb@Base 2.4.1</span>
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773
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759
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<pre style="margin: 0;"> <span id="LC759" class="line" lang="plaintext"> _ZN3bpp20AbstractOutputStream12setPrecisionEi@Base 2.4.1</span>
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774
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760
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<pre style="margin: 0;"> <span id="LC760" class="line" lang="plaintext"> _ZN3bpp20AbstractOutputStream24enableScientificNotationEb@Base 2.4.1</span>
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775
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<pre style="margin: 0;">-<span id="LC775" class="line" lang="plaintext"> _ZN3bpp20AbstractWrappedModelC2Ev@Base 2.4.1</span>
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776
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761
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<pre style="margin: 0;"> <span id="LC761" class="line" lang="plaintext"> _ZN3bpp20AbstractWrappedModelD2Ev@Base 2.4.1</span>
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777
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762
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<pre style="margin: 0;"> <span id="LC762" class="line" lang="plaintext"> _ZN3bpp20BppOTreeReaderFormat4readERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1</span>
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778
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763
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<pre style="margin: 0;"> <span id="LC763" class="line" lang="plaintext"> _ZN3bpp20BppOTreeReaderFormatD0Ev@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="877" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="862" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -877,7 +862,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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877
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862
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<pre style="margin: 0;"> <span id="LC862" class="line" lang="plaintext"> _ZN3bpp21ParametrizableAdapter19setParametersValuesERKNS_13ParameterListE@Base 2.4.1</span>
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878
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863
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<pre style="margin: 0;"> <span id="LC863" class="line" lang="plaintext"> _ZN3bpp21ParametrizableAdapter21matchParametersValuesERKNS_13ParameterListE@Base 2.4.1</span>
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879
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864
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<pre style="margin: 0;"> <span id="LC864" class="line" lang="plaintext"> _ZN3bpp21ParametrizableAdapter22setAllParametersValuesERKNS_13ParameterListE@Base 2.4.1</span>
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880
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<pre style="margin: 0;">-<span id="LC880" class="line" lang="plaintext"> _ZN3bpp21ParametrizableAdapterC2Ev@Base 2.4.1</span>
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881
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865
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<pre style="margin: 0;"> <span id="LC865" class="line" lang="plaintext"> _ZN3bpp21ParametrizableAdapterD2Ev@Base 2.4.1</span>
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882
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866
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<pre style="margin: 0;"> <span id="LC866" class="line" lang="plaintext"> _ZN3bpp21PseudoNewtonOptimizer11getFunctionEv@Base 2.4.1</span>
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883
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867
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<pre style="margin: 0;"> <span id="LC867" class="line" lang="plaintext"> _ZN3bpp21PseudoNewtonOptimizer15PNStopConditionD0Ev@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="922" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="906" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -922,7 +906,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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922
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906
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<pre style="margin: 0;"> <span id="LC906" class="line" lang="plaintext"> _ZN3bpp22AbstractFrequenciesSetC2ERKS0_@Base 2.4.1</span>
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923
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907
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<pre style="margin: 0;"> <span id="LC907" class="line" lang="plaintext"> _ZN3bpp22AbstractFrequenciesSetD2Ev@Base 2.4.1</span>
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924
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908
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<pre style="margin: 0;"> <span id="LC908" class="line" lang="plaintext"> _ZN3bpp22AbstractParametrizable13addParameter_EPNS_9ParameterE@Base 2.4.1</span>
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925
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<pre style="margin: 0;">-<span id="LC925" class="line" lang="plaintext"> _ZN3bpp22AbstractParametrizable13getParameter_ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1</span>
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926
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909
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<pre style="margin: 0;"> <span id="LC909" class="line" lang="plaintext"> _ZN3bpp22AbstractParametrizable13getParameter_Em@Base 2.4.1</span>
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927
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910
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<pre style="margin: 0;"> <span id="LC910" class="line" lang="plaintext"> _ZN3bpp22AbstractParametrizable14addParameters_ERKNS_13ParameterListE@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="928" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
928
</td>
<td class="diff-line-num new_line" data-linenumber="911" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
911
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<pre style="margin: 0;"> <span id="LC911" class="line" lang="plaintext"> _ZN3bpp22AbstractParametrizable16deleteParameter_ERNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1</span>
</pre>
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</tr>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="934" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -934,7 +917,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="934" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
934
</td>
<td class="diff-line-num new_line" data-linenumber="917" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
917
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<pre style="margin: 0;"> <span id="LC917" class="line" lang="plaintext"> _ZN3bpp22AbstractParametrizable20fireParameterChangedERKNS_13ParameterListE@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="935" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
935
</td>
<td class="diff-line-num new_line" data-linenumber="918" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
918
</td>
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<pre style="margin: 0;"> <span id="LC918" class="line" lang="plaintext"> _ZN3bpp22AbstractParametrizable21matchParametersValuesERKNS_13ParameterListE@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="936" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
936
</td>
<td class="diff-line-num new_line" data-linenumber="919" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
919
</td>
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<pre style="margin: 0;"> <span id="LC919" class="line" lang="plaintext"> _ZN3bpp22AbstractParametrizable22setAllParametersValuesERKNS_13ParameterListE@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="937" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
937
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<td class="diff-line-num new_line old" data-linenumber="920" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC937" class="line" lang="plaintext"> _ZN3bpp22AbstractParametrizableC2ERKS0_@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="938" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
938
</td>
<td class="diff-line-num new_line" data-linenumber="920" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
920
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<pre style="margin: 0;"> <span id="LC920" class="line" lang="plaintext"> _ZN3bpp22AbstractParametrizableD2Ev@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="939" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
939
</td>
<td class="diff-line-num new_line" data-linenumber="921" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
921
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<pre style="margin: 0;"> <span id="LC921" class="line" lang="plaintext"> _ZN3bpp22AbstractTreeLikelihood10initializeEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="940" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
940
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<td class="diff-line-num new_line" data-linenumber="922" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
922
</td>
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<pre style="margin: 0;"> <span id="LC922" class="line" lang="plaintext"> _ZN3bpp22AbstractTreeLikelihood17enableDerivativesEb@Base 2.4.1</span>
</pre>
</td>
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<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="988" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="970" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -988,7 +970,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="988" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
988
</td>
<td class="diff-line-num new_line" data-linenumber="970" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
970
</td>
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<pre style="margin: 0;"> <span id="LC970" class="line" lang="plaintext"> _ZN3bpp22NaiveSubstitutionCount18weightsHaveChangedEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="989" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
989
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<td class="diff-line-num new_line" data-linenumber="971" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
971
</td>
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<pre style="margin: 0;"> <span id="LC971" class="line" lang="plaintext"> _ZN3bpp22NaiveSubstitutionCount20setSubstitutionModelEPKNS_17SubstitutionModelE@Base 2.4.1</span>
</pre>
</td>
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<td class="diff-line-num old_line" data-linenumber="990" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
990
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<td class="diff-line-num new_line" data-linenumber="972" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
972
</td>
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<pre style="margin: 0;"> <span id="LC972" class="line" lang="plaintext"> _ZN3bpp22NaiveSubstitutionCount30substitutionRegisterHasChangedEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="991" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
991
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<td class="diff-line-num new_line old" data-linenumber="973" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC991" class="line" lang="plaintext"> _ZN3bpp22NaiveSubstitutionCountC1EPKNS_17SubstitutionModelEPNS_20SubstitutionRegisterEbPKNS_14AlphabetIndex2E@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="992" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
992
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<td class="diff-line-num new_line" data-linenumber="973" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
973
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<pre style="margin: 0;"> <span id="LC973" class="line" lang="plaintext"> _ZN3bpp22NaiveSubstitutionCountD0Ev@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="993" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
993
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<td class="diff-line-num new_line" data-linenumber="974" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
974
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<pre style="margin: 0;"> <span id="LC974" class="line" lang="plaintext"> _ZN3bpp22NaiveSubstitutionCountD1Ev@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="994" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
994
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<td class="diff-line-num new_line" data-linenumber="975" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
975
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC975" class="line" lang="plaintext"> _ZN3bpp22RASiteSimulationResultD0Ev@Base 2.4.1</span>
</pre>
</td>
</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1075" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1056" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1075,7 +1056,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="1075" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1075
</td>
<td class="diff-line-num new_line" data-linenumber="1056" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1056
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1056" class="line" lang="plaintext"> _ZN3bpp23NotImplementedExceptionD0Ev@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1076" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1076
</td>
<td class="diff-line-num new_line" data-linenumber="1057" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1057
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1057" class="line" lang="plaintext"> _ZN3bpp23NotImplementedExceptionD1Ev@Base 2.4.1</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="1077" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1077
</td>
<td class="diff-line-num new_line" data-linenumber="1058" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1058
</td>
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<pre style="margin: 0;"> <span id="LC1058" class="line" lang="plaintext"> _ZN3bpp23NotImplementedExceptionD2Ev@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1078" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1078
</td>
<td class="diff-line-num new_line old" data-linenumber="1059" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
</td>
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<pre style="margin: 0;">-<span id="LC1078" class="line" lang="plaintext"> _ZN3bpp23ParametersStopConditionD1Ev@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1079" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1079
</td>
<td class="diff-line-num new_line" data-linenumber="1059" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1059
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1059" class="line" lang="plaintext"> _ZN3bpp23SequenceSimulationTools13simulateSitesERKNS_13SiteSimulatorERKSt6vectorIdSaIdEE@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1080" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1080
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<td class="diff-line-num new_line" data-linenumber="1060" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1060
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1060" class="line" lang="plaintext"> _ZN3bpp23SequenceSimulationTools13simulateSitesERKNS_13SiteSimulatorERKSt6vectorIdSaIdEERKS4_ImSaImEE@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1081" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1081
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<td class="diff-line-num new_line" data-linenumber="1061" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1061
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1061" class="line" lang="plaintext"> _ZN3bpp23SequenceSimulationTools13simulateSitesERKNS_13SiteSimulatorERKSt6vectorImSaImEE@Base 2.4.1</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1094" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1074" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1094,6 +1074,7 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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1094
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1074
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<pre style="margin: 0;"> <span id="LC1074" class="line" lang="plaintext"> _ZN3bpp24BppOFrequenciesSetFormatC1Ehbi@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="1095" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1095
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<td class="diff-line-num new_line" data-linenumber="1075" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1075
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<pre style="margin: 0;"> <span id="LC1075" class="line" lang="plaintext"> _ZN3bpp24BppOFrequenciesSetFormatD0Ev@Base 2.4.1</span>
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1096
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<td class="diff-line-num new_line" data-linenumber="1076" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1076
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<pre style="margin: 0;"> <span id="LC1076" class="line" lang="plaintext"> _ZN3bpp24BppOFrequenciesSetFormatD1Ev@Base 2.4.1</span>
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<td class="diff-line-num new old_line" data-linenumber="1097" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1077" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1077
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<pre style="margin: 0;">+<span id="LC1077" class="line" lang="plaintext"> _ZN3bpp24BppOParametrizableFormatD0Ev@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="1097" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1097
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<td class="diff-line-num new_line" data-linenumber="1078" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1078
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<pre style="margin: 0;"> <span id="LC1078" class="line" lang="plaintext"> _ZN3bpp24CladogramDrawBranchEventC1EPKNS_11TreeDrawingEPNS_13GraphicDeviceEPKNS_12NodeTemplateINS_19TreeDrawingNodeInfoEEEdRKNS_6CursorEs@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="1098" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1098
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<td class="diff-line-num new_line" data-linenumber="1079" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1079
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<pre style="margin: 0;"> <span id="LC1079" class="line" lang="plaintext"> _ZN3bpp24CladogramDrawBranchEventC2EPKNS_11TreeDrawingEPNS_13GraphicDeviceEPKNS_12NodeTemplateINS_19TreeDrawingNodeInfoEEEdRKNS_6CursorEs@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="1099" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1099
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<td class="diff-line-num new_line" data-linenumber="1080" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1080
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<pre style="margin: 0;"> <span id="LC1080" class="line" lang="plaintext"> _ZN3bpp24CladogramDrawBranchEventD0Ev@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1162,6 +1143,7 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="1162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1162
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<td class="diff-line-num new_line" data-linenumber="1143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1143
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<pre style="margin: 0;"> <span id="LC1143" class="line" lang="plaintext"> _ZN3bpp24OneChangeTransitionModel15setFreqFromDataERKNS_17SequenceContainerEd@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1163
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<td class="diff-line-num new_line" data-linenumber="1144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1144
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<pre style="margin: 0;"> <span id="LC1144" class="line" lang="plaintext"> _ZN3bpp24OneChangeTransitionModel7setFreqERSt3mapIidSt4lessIiESaISt4pairIKidEEE@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1164
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<td class="diff-line-num new_line" data-linenumber="1145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1145
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<pre style="margin: 0;"> <span id="LC1145" class="line" lang="plaintext"> _ZN3bpp24OneChangeTransitionModel7setRateEd@Base 2.4.1</span>
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<td class="diff-line-num new old_line" data-linenumber="1165" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1146
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<pre style="margin: 0;">+<span id="LC1146" class="line" lang="plaintext"> _ZN3bpp24OneChangeTransitionModelC1ERKNS_17SubstitutionModelE@Base 2.4.1</span>
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1165
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<td class="diff-line-num new_line" data-linenumber="1147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1147
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<pre style="margin: 0;"> <span id="LC1147" class="line" lang="plaintext"> _ZN3bpp24OneChangeTransitionModelD0Ev@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="1166" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1166
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<td class="diff-line-num new_line" data-linenumber="1148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1148
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<pre style="margin: 0;"> <span id="LC1148" class="line" lang="plaintext"> _ZN3bpp24OneChangeTransitionModelD1Ev@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="1167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1167
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<td class="diff-line-num new_line" data-linenumber="1149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1149
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<pre style="margin: 0;"> <span id="LC1149" class="line" lang="plaintext"> _ZN3bpp24OneJumpSubstitutionCount20setSubstitutionModelEPKNS_17SubstitutionModelE@Base 2.4.1</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1210,7 +1192,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="1210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1210
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<td class="diff-line-num new_line" data-linenumber="1192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1192
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<pre style="margin: 0;"> <span id="LC1192" class="line" lang="plaintext"> _ZN3bpp24TripletSubstitutionModelC2EPKNS_13CodonAlphabetEPNS_27NucleotideSubstitutionModelES5_S5_@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1211
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<td class="diff-line-num new_line" data-linenumber="1193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1193
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1193" class="line" lang="plaintext"> _ZN3bpp24TripletSubstitutionModelD0Ev@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1212
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<td class="diff-line-num new_line" data-linenumber="1194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1194
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1194" class="line" lang="plaintext"> _ZN3bpp24TripletSubstitutionModelD1Ev@Base 2.4.1</span>
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<td class="diff-line-num old old_line" data-linenumber="1213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1213
</td>
<td class="diff-line-num new_line old" data-linenumber="1195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1213" class="line" lang="plaintext"> _ZN3bpp24TsTvSubstitutionRegisterC1EPKNS_22CodonSubstitutionModelE@Base 2.4.1</span>
</pre>
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<tr class="line_holder" id="" style="line-height: 1.6;">
<td class="diff-line-num old_line" data-linenumber="1214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1214
</td>
<td class="diff-line-num new_line" data-linenumber="1195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1195
</td>
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<pre style="margin: 0;"> <span id="LC1195" class="line" lang="plaintext"> _ZN3bpp24TsTvSubstitutionRegisterD0Ev@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1215" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1215
</td>
<td class="diff-line-num new_line" data-linenumber="1196" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1196
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1196" class="line" lang="plaintext"> _ZN3bpp24TsTvSubstitutionRegisterD1Ev@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1216" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1216
</td>
<td class="diff-line-num new_line" data-linenumber="1197" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1197
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1197" class="line" lang="plaintext"> _ZN3bpp24WrappedSubstitutionModelD2Ev@Base 2.4.1</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1250" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1231" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1250,7 +1231,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="1250" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1250
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<td class="diff-line-num new_line" data-linenumber="1231" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1231
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<pre style="margin: 0;"> <span id="LC1231" class="line" lang="plaintext"> _ZN3bpp25FullProteinFrequenciesSetD0Ev@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="1251" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1251
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<td class="diff-line-num new_line" data-linenumber="1232" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1232
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<pre style="margin: 0;"> <span id="LC1232" class="line" lang="plaintext"> _ZN3bpp25FullProteinFrequenciesSetD1Ev@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="1252" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1252
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<td class="diff-line-num new_line" data-linenumber="1233" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1233
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<pre style="margin: 0;"> <span id="LC1233" class="line" lang="plaintext"> _ZN3bpp25HomogeneousTreeLikelihood15getModelForSiteEim@Base 2.4.1</span>
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<td class="diff-line-num old old_line" data-linenumber="1253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1253
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<td class="diff-line-num new_line old" data-linenumber="1234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1253" class="line" lang="plaintext"> _ZN3bpp25HomogeneousTreeLikelihoodC2Ev@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="1254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1254
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<td class="diff-line-num new_line" data-linenumber="1234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1234
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<pre style="margin: 0;"> <span id="LC1234" class="line" lang="plaintext"> _ZN3bpp25HomogeneousTreeLikelihoodD2Ev@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="1255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1255
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<td class="diff-line-num new_line" data-linenumber="1235" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1235
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<pre style="margin: 0;"> <span id="LC1235" class="line" lang="plaintext"> _ZN3bpp25IndexOutOfBoundsExceptionD0Ev@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="1256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1256
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<td class="diff-line-num new_line" data-linenumber="1236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1236
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<pre style="margin: 0;"> <span id="LC1236" class="line" lang="plaintext"> _ZN3bpp25IndexOutOfBoundsExceptionD1Ev@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1303" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1303,14 +1283,12 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="1303" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1303
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<td class="diff-line-num new_line" data-linenumber="1283" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1283
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<pre style="margin: 0;"> <span id="LC1283" class="line" lang="plaintext"> _ZN3bpp26AbstractParameterAliasable16deleteParameter_Em@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="1304" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1304
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<td class="diff-line-num new_line" data-linenumber="1284" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1284
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<pre style="margin: 0;"> <span id="LC1284" class="line" lang="plaintext"> _ZN3bpp26AbstractParameterAliasable17deleteParameters_ERKSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS7_EE@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="1305" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1305
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<td class="diff-line-num new_line" data-linenumber="1285" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1285
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<pre style="margin: 0;"> <span id="LC1285" class="line" lang="plaintext"> _ZN3bpp26AbstractParameterAliasable18includeParameters_ERKNS_13ParameterListE@Base 2.4.1</span>
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1306
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<td class="diff-line-num new_line old" data-linenumber="1286" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1306" class="line" lang="plaintext"> _ZN3bpp26AbstractParameterAliasableC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="1307" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1307
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<td class="diff-line-num new_line" data-linenumber="1286" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1286
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<pre style="margin: 0;"> <span id="LC1286" class="line" lang="plaintext"> _ZN3bpp26AbstractTreeLikelihoodDataD2Ev@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1308" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1308
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<td class="diff-line-num new_line" data-linenumber="1287" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1287
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<pre style="margin: 0;"> <span id="LC1287" class="line" lang="plaintext"> _ZN3bpp26AbstractTreeParsimonyScore5init_ERKNS_13SiteContainerEb@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1309" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1309
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<td class="diff-line-num new_line" data-linenumber="1288" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1288
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<pre style="margin: 0;"> <span id="LC1288" class="line" lang="plaintext"> _ZN3bpp26AbstractTreeParsimonyScoreC1ERKNS_4TreeERKNS_13SiteContainerEPKNS_8StateMapEb@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1310" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1310
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<td class="diff-line-num new_line" data-linenumber="1289" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1289
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<pre style="margin: 0;"> <span id="LC1289" class="line" lang="plaintext"> _ZN3bpp26AbstractTreeParsimonyScoreC1ERKNS_4TreeERKNS_13SiteContainerEbb@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1311" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1311
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<td class="diff-line-num new_line" data-linenumber="1290" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1290
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC1290" class="line" lang="plaintext"> _ZN3bpp26AbstractTreeParsimonyScoreC2ERKNS_4TreeERKNS_13SiteContainerEPKNS_8StateMapEb@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1312" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1312
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<td class="diff-line-num new_line" data-linenumber="1291" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1291
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<pre style="margin: 0;"> <span id="LC1291" class="line" lang="plaintext"> _ZN3bpp26AbstractTreeParsimonyScoreC2ERKNS_4TreeERKNS_13SiteContainerEbb@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="1313" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
1313
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<td class="diff-line-num new_line old" data-linenumber="1292" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC1313" class="line" lang="plaintext"> _ZN3bpp26AbstractTreeParsimonyScoreC2ERKS0_@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="1314" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1314
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<td class="diff-line-num new_line" data-linenumber="1292" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1292
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<pre style="margin: 0;"> <span id="LC1292" class="line" lang="plaintext"> _ZN3bpp26AbstractTreeParsimonyScoreD2Ev@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1315" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1315
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<td class="diff-line-num new_line" data-linenumber="1293" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1293
</td>
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<pre style="margin: 0;"> <span id="LC1293" class="line" lang="plaintext"> _ZN3bpp26AbstractWordFrequenciesSet17getSizeFromVectorERKSt6vectorIPNS_14FrequenciesSetESaIS3_EE@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="1316" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1316
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<td class="diff-line-num new_line" data-linenumber="1294" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1294
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<pre style="margin: 0;"> <span id="LC1294" class="line" lang="plaintext"> _ZN3bpp26AbstractWordFrequenciesSetC1EPNS_8StateMapERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESA_@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1344" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1322" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1344,7 +1322,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="1344" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1344
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<td class="diff-line-num new_line" data-linenumber="1322" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1322
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<pre style="margin: 0;"> <span id="LC1322" class="line" lang="plaintext"> _ZN3bpp26PhylipDistanceMatrixFormatD1Ev@Base 2.4.1</span>
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1345
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1323
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<pre style="margin: 0;"> <span id="LC1323" class="line" lang="plaintext"> _ZN3bpp26ProbabilisticRewardMapping16setNumberOfSitesEm@Base 2.4.1</span>
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1346
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1324
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<pre style="margin: 0;"> <span id="LC1324" class="line" lang="plaintext"> _ZN3bpp26ProbabilisticRewardMapping7setTreeERKNS_4TreeE@Base 2.4.1</span>
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<pre style="margin: 0;">-<span id="LC1347" class="line" lang="plaintext"> _ZN3bpp26ProbabilisticRewardMappingC1ERKNS_4TreeEPKNS_6RewardEm@Base 2.4.1</span>
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1348
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1325
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<pre style="margin: 0;"> <span id="LC1325" class="line" lang="plaintext"> _ZN3bpp26ProbabilisticRewardMappingD0Ev@Base 2.4.1</span>
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1349
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1326
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<pre style="margin: 0;"> <span id="LC1326" class="line" lang="plaintext"> _ZN3bpp26ProbabilisticRewardMappingD1Ev@Base 2.4.1</span>
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1350
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1327
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<pre style="margin: 0;"> <span id="LC1327" class="line" lang="plaintext"> _ZN3bpp26ProbabilisticRewardMappingclEmm@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1371" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1348" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1371,7 +1348,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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1371
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1348
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<pre style="margin: 0;"> <span id="LC1348" class="line" lang="plaintext"> _ZN3bpp26RHomogeneousTreeLikelihoodD2Ev@Base 2.4.1</span>
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1372
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1349
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<pre style="margin: 0;"> <span id="LC1349" class="line" lang="plaintext"> _ZN3bpp26RHomogeneousTreeLikelihoodaSERKS0_@Base 2.4.1</span>
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1373
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1350
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<pre style="margin: 0;"> <span id="LC1350" class="line" lang="plaintext"> _ZN3bpp26SimpleDiscreteDistributionD0Ev@Base 2.4.1</span>
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1374
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<pre style="margin: 0;">-<span id="LC1374" class="line" lang="plaintext"> _ZN3bpp26SimpleDiscreteDistributionD1Ev@Base 2.4.1</span>
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1375
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1351
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<pre style="margin: 0;"> <span id="LC1351" class="line" lang="plaintext"> _ZN3bpp26TreeDrawingListenerAdapter13afterDrawNodeERKNS_13DrawNodeEventE@Base 2.4.1</span>
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1376
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1352
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<pre style="margin: 0;"> <span id="LC1352" class="line" lang="plaintext"> _ZN3bpp26TreeDrawingListenerAdapter13afterDrawTreeERKNS_13DrawTreeEventE@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="1377" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1377
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1353
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<pre style="margin: 0;"> <span id="LC1353" class="line" lang="plaintext"> _ZN3bpp26TreeDrawingListenerAdapter14beforeDrawNodeERKNS_13DrawNodeEventE@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1471" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1447" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1471,8 +1447,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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1471
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1447
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<pre style="margin: 0;"> <span id="LC1447" class="line" lang="plaintext"> _ZN3bpp27MixtureOfSubstitutionModelsD2Ev@Base 2.4.1</span>
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1472
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1448
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<pre style="margin: 0;"> <span id="LC1448" class="line" lang="plaintext"> _ZN3bpp27MixtureOfSubstitutionModelsaSERKS0_@Base 2.4.1</span>
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1473
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1449
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<pre style="margin: 0;"> <span id="LC1449" class="line" lang="plaintext"> _ZN3bpp27NucleotideSubstitutionModelD2Ev@Base 2.4.1</span>
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1474
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<pre style="margin: 0;">-<span id="LC1474" class="line" lang="plaintext"> _ZN3bpp27ReversibleSubstitutionModelC2ERKS0_@Base 2.4.1</span>
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1475
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<pre style="margin: 0;">-<span id="LC1475" class="line" lang="plaintext"> _ZN3bpp27ReversibleSubstitutionModelC2Ev@Base 2.4.1</span>
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1476
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1450
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<pre style="margin: 0;"> <span id="LC1450" class="line" lang="plaintext"> _ZN3bpp27ReversibleSubstitutionModelD2Ev@Base 2.4.1</span>
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1477
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1451
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<pre style="margin: 0;"> <span id="LC1451" class="line" lang="plaintext"> _ZN3bpp27TreeDrawingDisplayControler11addListenerERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPNS_19TreeDrawingListenerE@Base 2.4.1</span>
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1478
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1452
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<pre style="margin: 0;"> <span id="LC1452" class="line" lang="plaintext"> _ZN3bpp27TreeDrawingDisplayControlerD0Ev@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1485" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1459" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1485,7 +1459,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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1485
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1459
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<pre style="margin: 0;"> <span id="LC1459" class="line" lang="plaintext"> _ZN3bpp28AbstractSubstitutionRegisterD2Ev@Base 2.4.1</span>
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1486
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1460
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<pre style="margin: 0;"> <span id="LC1460" class="line" lang="plaintext"> _ZN3bpp28CategorySubstitutionRegister18setModelCategoriesIiEEvRKSt3mapImT_St4lessImESaISt4pairIKmS3_EEE@Base 2.4.1</span>
</pre>
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1487
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<td class="diff-line-num new_line" data-linenumber="1461" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1461
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<pre style="margin: 0;"> <span id="LC1461" class="line" lang="plaintext"> _ZN3bpp28CategorySubstitutionRegister21setAlphabetCategoriesIiEEvRKSt3mapIiT_St4lessIiESaISt4pairIKiS3_EEE@Base 2.4.1</span>
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1488
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<pre style="margin: 0;">-<span id="LC1488" class="line" lang="plaintext"> _ZN3bpp28CategorySubstitutionRegisterC2EPKNS_17SubstitutionModelEb@Base 2.4.1</span>
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1489
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1462
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<pre style="margin: 0;"> <span id="LC1462" class="line" lang="plaintext"> _ZN3bpp28CategorySubstitutionRegisterC2ERKS0_@Base 2.4.1</span>
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1490
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<td class="diff-line-num new_line" data-linenumber="1463" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1463
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<pre style="margin: 0;"> <span id="LC1463" class="line" lang="plaintext"> _ZN3bpp28CategorySubstitutionRegisterD2Ev@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="1491" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1491
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<td class="diff-line-num new_line" data-linenumber="1464" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1464
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<pre style="margin: 0;"> <span id="LC1464" class="line" lang="plaintext"> _ZN3bpp28DRASDRTreeLikelihoodLeafData7setNodeEPKNS_4NodeE@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1549" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1522" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1549,7 +1522,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="1549" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1549
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<td class="diff-line-num new_line" data-linenumber="1522" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
1522
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<pre style="margin: 0;"> <span id="LC1522" class="line" lang="plaintext"> _ZN3bpp28NNIHomogeneousTreeLikelihoodD2Ev@Base 2.4.1</span>
</pre>
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1550
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1523
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<pre style="margin: 0;"> <span id="LC1523" class="line" lang="plaintext"> _ZN3bpp28NNIHomogeneousTreeLikelihoodaSERKS0_@Base 2.4.1</span>
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1551
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1524
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<pre style="margin: 0;"> <span id="LC1524" class="line" lang="plaintext"> _ZN3bpp28NonHomogeneousTreeLikelihood15getModelForSiteEim@Base 2.4.1</span>
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1552
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<pre style="margin: 0;">-<span id="LC1552" class="line" lang="plaintext"> _ZN3bpp28NonHomogeneousTreeLikelihoodC2Ev@Base 2.4.1</span>
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1553
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1525
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<pre style="margin: 0;"> <span id="LC1525" class="line" lang="plaintext"> _ZN3bpp28NonHomogeneousTreeLikelihoodD2Ev@Base 2.4.1</span>
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1554
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1526
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<pre style="margin: 0;"> <span id="LC1526" class="line" lang="plaintext"> _ZN3bpp28SelectedSubstitutionRegisterC1EPKNS_17SubstitutionModelENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1</span>
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1555
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1527
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<pre style="margin: 0;"> <span id="LC1527" class="line" lang="plaintext"> _ZN3bpp28SelectedSubstitutionRegisterD0Ev@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2081" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2053" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2081,7 +2053,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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2081
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2053
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<pre style="margin: 0;"> <span id="LC2053" class="line" lang="plaintext"> _ZN3bpp38AbstractKroneckerWordSubstitutionModelC2ERNS_9ModelListERKSt6vectorISt3setImSt4lessImESaImEESaIS8_EERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1</span>
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2082
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2054
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<pre style="margin: 0;"> <span id="LC2054" class="line" lang="plaintext"> _ZN3bpp38AbstractKroneckerWordSubstitutionModelD2Ev@Base 2.4.1</span>
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2083
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2055
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<pre style="margin: 0;"> <span id="LC2055" class="line" lang="plaintext"> _ZN3bpp38AbstractKroneckerWordSubstitutionModelaSERKS0_@Base 2.4.1</span>
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2084
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<pre style="margin: 0;">-<span id="LC2084" class="line" lang="plaintext"> _ZN3bpp38DiscreteRatesAcrossSitesTreeLikelihoodC2Ev@Base 2.4.1</span>
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2085
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2056
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<pre style="margin: 0;"> <span id="LC2056" class="line" lang="plaintext"> _ZN3bpp38DiscreteRatesAcrossSitesTreeLikelihoodD2Ev@Base 2.4.1</span>
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2086
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2057
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<pre style="margin: 0;"> <span id="LC2057" class="line" lang="plaintext"> _ZN3bpp38LabelCollapsedNodesTreeDrawingListener13afterDrawNodeERKNS_13DrawNodeEventE@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="2087" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2087
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2058
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<pre style="margin: 0;"> <span id="LC2058" class="line" lang="plaintext"> _ZN3bpp38LabelCollapsedNodesTreeDrawingListenerD0Ev@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2218" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2189" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2218,7 +2189,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="2218" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2218
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2189
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<pre style="margin: 0;"> <span id="LC2189" class="line" lang="plaintext"> _ZN3bpp41CodonDistanceFrequenciesSubstitutionModelC2EPKNS_11GeneticCodeEPNS_27NucleotideSubstitutionModelES5_S5_PNS_14FrequenciesSetEPKNS_14AlphabetIndex2Eb@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="2219" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2219
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<td class="diff-line-num new_line" data-linenumber="2190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2190
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<pre style="margin: 0;"> <span id="LC2190" class="line" lang="plaintext"> _ZN3bpp41CodonDistanceFrequenciesSubstitutionModelD0Ev@Base 2.4.1</span>
</pre>
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2220
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<td class="diff-line-num new_line" data-linenumber="2191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2191
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<pre style="margin: 0;"> <span id="LC2191" class="line" lang="plaintext"> _ZN3bpp41CodonDistanceFrequenciesSubstitutionModelD1Ev@Base 2.4.1</span>
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2221
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<td class="diff-line-num new_line old" data-linenumber="2192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2221" class="line" lang="plaintext"> _ZN3bpp42AbstractReversibleProteinSubstitutionModelC2EPKNS_15ProteicAlphabetEPNS_8StateMapERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1</span>
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2222
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<td class="diff-line-num new_line" data-linenumber="2192" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2192
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<pre style="margin: 0;"> <span id="LC2192" class="line" lang="plaintext"> _ZN3bpp42AbstractReversibleProteinSubstitutionModelD2Ev@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2223" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2223
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<td class="diff-line-num new_line" data-linenumber="2193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2193
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<pre style="margin: 0;"> <span id="LC2193" class="line" lang="plaintext"> _ZN3bpp43DiscreteRatesAcrossSitesClockTreeLikelihoodD2Ev@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="2224" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2224
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<td class="diff-line-num new_line" data-linenumber="2194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2194
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<pre style="margin: 0;"> <span id="LC2194" class="line" lang="plaintext"> _ZN3bpp43ReparametrizationDerivableFirstOrderWrapper27enableFirstOrderDerivativesEb@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2349" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2319" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2349,12 +2319,10 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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2349
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2319
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<pre style="margin: 0;"> <span id="LC2319" class="line" lang="plaintext"> _ZN3bpp4RE0815setFreqFromDataERKNS_17SequenceContainerEd@Base 2.4.1</span>
</pre>
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2350
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<td class="diff-line-num new_line" data-linenumber="2320" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2320
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<pre style="margin: 0;"> <span id="LC2320" class="line" lang="plaintext"> _ZN3bpp4RE0820fireParameterChangedERKNS_13ParameterListE@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="2351" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2351
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<td class="diff-line-num new_line" data-linenumber="2321" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2321
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<pre style="margin: 0;"> <span id="LC2321" class="line" lang="plaintext"> _ZN3bpp4RE08C1EPNS_27ReversibleSubstitutionModelEdd@Base 2.4.1</span>
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2352
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<td class="diff-line-num new_line old" data-linenumber="2322" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2352" class="line" lang="plaintext"> _ZN3bpp4RE08C1ERKS0_@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="2353" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2353
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<td class="diff-line-num new_line" data-linenumber="2322" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2322
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<pre style="margin: 0;"> <span id="LC2322" class="line" lang="plaintext"> _ZN3bpp4RE08C2EPNS_27ReversibleSubstitutionModelEdd@Base 2.4.1</span>
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2354
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<td class="diff-line-num new_line" data-linenumber="2323" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2323
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2323" class="line" lang="plaintext"> _ZN3bpp4RE08C2ERKS0_@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2355" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2355
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<td class="diff-line-num new_line" data-linenumber="2324" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2324
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2324" class="line" lang="plaintext"> _ZN3bpp4RE08D0Ev@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2356" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2356
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2325
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<pre style="margin: 0;"> <span id="LC2325" class="line" lang="plaintext"> _ZN3bpp4RE08D1Ev@Base 2.4.1</span>
</pre>
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2357
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<pre style="margin: 0;">-<span id="LC2357" class="line" lang="plaintext"> _ZN3bpp4RE08D2Ev@Base 2.4.1</span>
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2358
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2326
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<pre style="margin: 0;"> <span id="LC2326" class="line" lang="plaintext"> _ZN3bpp4RN9514updateMatricesEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2359" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2359
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<td class="diff-line-num new_line" data-linenumber="2327" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2327
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<pre style="margin: 0;"> <span id="LC2327" class="line" lang="plaintext"> _ZN3bpp4RN957setFreqERSt3mapIidSt4lessIiESaISt4pairIKidEEE@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2360" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2360
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<td class="diff-line-num new_line" data-linenumber="2328" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2328
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<pre style="margin: 0;"> <span id="LC2328" class="line" lang="plaintext"> _ZN3bpp4RN95C1EPKNS_15NucleicAlphabetEdddddddd@Base 2.4.1</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2417" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2385" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2417,6 +2385,7 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="2417" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2417
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2385
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<pre style="margin: 0;"> <span id="LC2385" class="line" lang="plaintext"> _ZN3bpp5Coala15setFreqFromDataERKNS_17SequenceContainerEd@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2418" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2418
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<td class="diff-line-num new_line" data-linenumber="2386" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2386
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<pre style="margin: 0;"> <span id="LC2386" class="line" lang="plaintext"> _ZN3bpp5Coala29computeEquilibriumFrequenciesEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2419" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2419
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<td class="diff-line-num new_line" data-linenumber="2387" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2387
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<pre style="margin: 0;"> <span id="LC2387" class="line" lang="plaintext"> _ZN3bpp5CoalaC1EPKNS_15ProteicAlphabetERKNS_24ProteinSubstitutionModelEjb@Base 2.4.1</span>
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<td class="diff-line-num new old_line" data-linenumber="2420" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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2388
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<pre style="margin: 0;">+<span id="LC2388" class="line" lang="plaintext"> _ZN3bpp5CoalaC1ERKS0_@Base 2.4.1</span>
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2420
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2389
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<pre style="margin: 0;"> <span id="LC2389" class="line" lang="plaintext"> _ZN3bpp5CoalaC2EPKNS_15ProteicAlphabetERKNS_24ProteinSubstitutionModelEjb@Base 2.4.1</span>
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2421
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2390
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<pre style="margin: 0;"> <span id="LC2390" class="line" lang="plaintext"> _ZN3bpp5CoalaD0Ev@Base 2.4.1</span>
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2422
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2391
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<pre style="margin: 0;"> <span id="LC2391" class="line" lang="plaintext"> _ZN3bpp5CoalaD1Ev@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2495" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2464" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2495,6 +2464,7 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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2495
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2464
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<pre style="margin: 0;"> <span id="LC2464" class="line" lang="plaintext"> _ZN3bpp6MatrixIdE6equalsERKS1_d@Base 2.4.1</span>
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2496
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2465
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<pre style="margin: 0;"> <span id="LC2465" class="line" lang="plaintext"> _ZN3bpp6MatrixIiE6equalsERKS1_d@Base 2.4.1</span>
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2497
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2466
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<pre style="margin: 0;"> <span id="LC2466" class="line" lang="plaintext"> _ZN3bpp6MatrixImE6equalsERKS1_d@Base 2.4.1</span>
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<td class="diff-line-num new old_line" data-linenumber="2498" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2467" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2467
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<pre style="margin: 0;">+<span id="LC2467" class="line" lang="plaintext"> _ZN3bpp6NewickC1Ebbb@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="2498" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2498
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2468
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<pre style="margin: 0;"> <span id="LC2468" class="line" lang="plaintext"> _ZN3bpp6NewickD0Ev@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="2499" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2499
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2469
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<pre style="margin: 0;"> <span id="LC2469" class="line" lang="plaintext"> _ZN3bpp6NewickD1Ev@Base 2.4.1</span>
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2500
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2470
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<pre style="margin: 0;"> <span id="LC2470" class="line" lang="plaintext"> _ZN3bpp6NumberIdED0Ev@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2518" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2488" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2518,7 +2488,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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2518
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2488
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<pre style="margin: 0;"> <span id="LC2488" class="line" lang="plaintext"> _ZN3bpp6StdStrC1Ev@Base 2.4.1</span>
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2519
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2489
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<pre style="margin: 0;"> <span id="LC2489" class="line" lang="plaintext"> _ZN3bpp6StdStrD0Ev@Base 2.4.1</span>
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2520
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2490
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<pre style="margin: 0;"> <span id="LC2490" class="line" lang="plaintext"> _ZN3bpp6StdStrD1Ev@Base 2.4.1</span>
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2521
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<pre style="margin: 0;">-<span id="LC2521" class="line" lang="plaintext"> _ZN3bpp6YNGP_MC2ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1</span>
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2522
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2491
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<pre style="margin: 0;"> <span id="LC2491" class="line" lang="plaintext"> _ZN3bpp6YNGP_MD2Ev@Base 2.4.1</span>
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2523
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2492
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<pre style="margin: 0;"> <span id="LC2492" class="line" lang="plaintext"> _ZN3bpp7Point2DIdED0Ev@Base 2.4.1</span>
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2524
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2493
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<pre style="margin: 0;"> <span id="LC2493" class="line" lang="plaintext"> _ZN3bpp7Point2DIdED1Ev@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2526" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2495" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2526,26 +2495,31 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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2526
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2495
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<pre style="margin: 0;"> <span id="LC2495" class="line" lang="plaintext"> _ZN3bpp7SimplexD1Ev@Base 2.4.1</span>
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2527
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2496
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<pre style="margin: 0;"> <span id="LC2496" class="line" lang="plaintext"> _ZN3bpp7YNGP_M114updateMatricesEv@Base 2.4.1</span>
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2528
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2497
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<pre style="margin: 0;"> <span id="LC2497" class="line" lang="plaintext"> _ZN3bpp7YNGP_M1C1EPKNS_11GeneticCodeEPNS_14FrequenciesSetE@Base 2.4.1</span>
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2498
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<pre style="margin: 0;">+<span id="LC2498" class="line" lang="plaintext"> _ZN3bpp7YNGP_M1C1ERKS0_@Base 2.4.1</span>
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2529
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2499
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<pre style="margin: 0;"> <span id="LC2499" class="line" lang="plaintext"> _ZN3bpp7YNGP_M1C2EPKNS_11GeneticCodeEPNS_14FrequenciesSetE@Base 2.4.1</span>
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2530
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2500
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<pre style="margin: 0;"> <span id="LC2500" class="line" lang="plaintext"> _ZN3bpp7YNGP_M1D0Ev@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC2501" class="line" lang="plaintext"> _ZN3bpp7YNGP_M1D1Ev@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC2502" class="line" lang="plaintext"> _ZN3bpp7YNGP_M214updateMatricesEv@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC2503" class="line" lang="plaintext"> _ZN3bpp7YNGP_M2C1EPKNS_11GeneticCodeEPNS_14FrequenciesSetE@Base 2.4.1</span>
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<pre style="margin: 0;">+<span id="LC2504" class="line" lang="plaintext"> _ZN3bpp7YNGP_M2C1ERKS0_@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC2505" class="line" lang="plaintext"> _ZN3bpp7YNGP_M2C2EPKNS_11GeneticCodeEPNS_14FrequenciesSetE@Base 2.4.1</span>
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2535
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2506
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<pre style="margin: 0;"> <span id="LC2506" class="line" lang="plaintext"> _ZN3bpp7YNGP_M2D0Ev@Base 2.4.1</span>
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2507
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<pre style="margin: 0;"> <span id="LC2507" class="line" lang="plaintext"> _ZN3bpp7YNGP_M2D1Ev@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC2508" class="line" lang="plaintext"> _ZN3bpp7YNGP_M314updateMatricesEv@Base 2.4.1</span>
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2538
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<pre style="margin: 0;"> <span id="LC2509" class="line" lang="plaintext"> _ZN3bpp7YNGP_M3C1EPKNS_11GeneticCodeEPNS_14FrequenciesSetEj@Base 2.4.1</span>
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2510
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<pre style="margin: 0;">+<span id="LC2510" class="line" lang="plaintext"> _ZN3bpp7YNGP_M3C1ERKS0_@Base 2.4.1</span>
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2539
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2511
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<pre style="margin: 0;"> <span id="LC2511" class="line" lang="plaintext"> _ZN3bpp7YNGP_M3C2EPKNS_11GeneticCodeEPNS_14FrequenciesSetEj@Base 2.4.1</span>
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2540
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2512
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<pre style="margin: 0;"> <span id="LC2512" class="line" lang="plaintext"> _ZN3bpp7YNGP_M3D0Ev@Base 2.4.1</span>
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2541
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2513
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<pre style="margin: 0;"> <span id="LC2513" class="line" lang="plaintext"> _ZN3bpp7YNGP_M3D1Ev@Base 2.4.1</span>
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2542
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2514
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<pre style="margin: 0;"> <span id="LC2514" class="line" lang="plaintext"> _ZN3bpp7YNGP_M714updateMatricesEv@Base 2.4.1</span>
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2543
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2515
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<pre style="margin: 0;"> <span id="LC2515" class="line" lang="plaintext"> _ZN3bpp7YNGP_M7C1EPKNS_11GeneticCodeEPNS_14FrequenciesSetEj@Base 2.4.1</span>
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2516
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<pre style="margin: 0;">+<span id="LC2516" class="line" lang="plaintext"> _ZN3bpp7YNGP_M7C1ERKS0_@Base 2.4.1</span>
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2544
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2517
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<pre style="margin: 0;"> <span id="LC2517" class="line" lang="plaintext"> _ZN3bpp7YNGP_M7C2EPKNS_11GeneticCodeEPNS_14FrequenciesSetEj@Base 2.4.1</span>
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2545
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2518
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<pre style="margin: 0;"> <span id="LC2518" class="line" lang="plaintext"> _ZN3bpp7YNGP_M7D0Ev@Base 2.4.1</span>
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2546
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2519
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<pre style="margin: 0;"> <span id="LC2519" class="line" lang="plaintext"> _ZN3bpp7YNGP_M7D1Ev@Base 2.4.1</span>
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2547
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2520
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<pre style="margin: 0;"> <span id="LC2520" class="line" lang="plaintext"> _ZN3bpp7YNGP_M814updateMatricesEv@Base 2.4.1</span>
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2548
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2521
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<pre style="margin: 0;"> <span id="LC2521" class="line" lang="plaintext"> _ZN3bpp7YNGP_M8C1EPKNS_11GeneticCodeEPNS_14FrequenciesSetEj@Base 2.4.1</span>
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2522
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<pre style="margin: 0;">+<span id="LC2522" class="line" lang="plaintext"> _ZN3bpp7YNGP_M8C1ERKS0_@Base 2.4.1</span>
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2549
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2523
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<pre style="margin: 0;"> <span id="LC2523" class="line" lang="plaintext"> _ZN3bpp7YNGP_M8C2EPKNS_11GeneticCodeEPNS_14FrequenciesSetEj@Base 2.4.1</span>
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2550
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2524
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<pre style="margin: 0;"> <span id="LC2524" class="line" lang="plaintext"> _ZN3bpp7YNGP_M8D0Ev@Base 2.4.1</span>
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2551
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2525
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<pre style="margin: 0;"> <span id="LC2525" class="line" lang="plaintext"> _ZN3bpp7YNGP_M8D1Ev@Base 2.4.1</span>
</pre>
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</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2671" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2645" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2671,7 +2645,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="2671" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2671
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<td class="diff-line-num new_line" data-linenumber="2645" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2645
</td>
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<pre style="margin: 0;"> <span id="LC2645" class="line" lang="plaintext"> _ZN3bpp9TextTools2toIjEET_RKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2672" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2672
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<td class="diff-line-num new_line" data-linenumber="2646" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2646
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<pre style="margin: 0;"> <span id="LC2646" class="line" lang="plaintext"> _ZN3bpp9TextTools2toImEET_RKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2673" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2673
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<td class="diff-line-num new_line" data-linenumber="2647" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2647
</td>
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<pre style="margin: 0;"> <span id="LC2647" class="line" lang="plaintext"> _ZN3bpp9TextTools8toStringINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEEES7_T_@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="2674" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2674
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<td class="diff-line-num new_line old" data-linenumber="2648" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC2674" class="line" lang="plaintext"> _ZN3bpp9TextTools8toStringIPKcEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="2675" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2675
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<td class="diff-line-num new_line" data-linenumber="2648" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2648
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC2648" class="line" lang="plaintext"> _ZN3bpp9TextTools8toStringIdEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2676" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2676
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<td class="diff-line-num new_line" data-linenumber="2649" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2649
</td>
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<pre style="margin: 0;"> <span id="LC2649" class="line" lang="plaintext"> _ZN3bpp9TextTools8toStringIdEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_i@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2677" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2677
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<td class="diff-line-num new_line" data-linenumber="2650" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2650
</td>
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<pre style="margin: 0;"> <span id="LC2650" class="line" lang="plaintext"> _ZN3bpp9TextTools8toStringIiEENSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEET_@Base 2.4.1</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="2993" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2966" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -2993,7 +2966,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="2993" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2993
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<td class="diff-line-num new_line" data-linenumber="2966" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2966
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<pre style="margin: 0;"> <span id="LC2966" class="line" lang="plaintext"> _ZNK3bpp13DrawTreeEvent16getGraphicDeviceEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2994" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2994
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<td class="diff-line-num new_line" data-linenumber="2967" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2967
</td>
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<pre style="margin: 0;"> <span id="LC2967" class="line" lang="plaintext"> _ZNK3bpp13MetaOptimizer5cloneEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="2995" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2995
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2968
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<pre style="margin: 0;"> <span id="LC2968" class="line" lang="plaintext"> _ZNK3bpp13NodeException9getNodeIdEv@Base 2.4.1</span>
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<td class="diff-line-num old old_line" data-linenumber="2996" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
2996
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<pre style="margin: 0;">-<span id="LC2996" class="line" lang="plaintext"> _ZNK3bpp13ParameterList15printParametersERSo@Base 2.4.1</span>
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2997
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2969
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<pre style="margin: 0;"> <span id="LC2969" class="line" lang="plaintext"> _ZNK3bpp13ParameterList5cloneEv@Base 2.4.1</span>
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2998
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2970
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<pre style="margin: 0;"> <span id="LC2970" class="line" lang="plaintext"> _ZNK3bpp13ParameterListixEm@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="2999" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2999
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2971
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<pre style="margin: 0;"> <span id="LC2971" class="line" lang="plaintext"> _ZNK3bpp13PhylogramPlot14recursivePlot_ERNS_13GraphicDeviceERNS_12NodeTemplateINS_19TreeDrawingNodeInfoEEEdRdddPj@Base 2.4.1</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3011" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="2983" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3011,6 +2983,8 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="3011" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3011
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<td class="diff-line-num new_line" data-linenumber="2983" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2983
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<pre style="margin: 0;"> <span id="LC2983" class="line" lang="plaintext"> _ZNK3bpp14DistanceMatrix8asMatrixEv@Base 2.4.1</span>
</pre>
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3012
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<td class="diff-line-num new_line" data-linenumber="2984" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2984
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<pre style="margin: 0;"> <span id="LC2984" class="line" lang="plaintext"> _ZNK3bpp14DistanceMatrixclERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES8_@Base 2.4.1</span>
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3013
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2985
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<pre style="margin: 0;"> <span id="LC2985" class="line" lang="plaintext"> _ZNK3bpp14DistanceMatrixclEmm@Base 2.4.1</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3014" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2986" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2986
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<pre style="margin: 0;">+<span id="LC2986" class="line" lang="plaintext"> _ZNK3bpp14LetterAlphabet16isCharInAlphabetERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1</span>
</pre>
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<td class="diff-line-num new new_line" data-linenumber="2987" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2987
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<pre style="margin: 0;">+<span id="LC2987" class="line" lang="plaintext"> _ZNK3bpp14LetterAlphabet9charToIntERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1</span>
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3014
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2988
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<pre style="margin: 0;"> <span id="LC2988" class="line" lang="plaintext"> _ZNK3bpp14NodePException7getNodeEv@Base 2.4.1</span>
</pre>
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3015
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2989
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<pre style="margin: 0;"> <span id="LC2989" class="line" lang="plaintext"> _ZNK3bpp14NodePException9getNodeIdEv@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="3016" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3016
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<td class="diff-line-num new_line" data-linenumber="2990" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
2990
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<pre style="margin: 0;"> <span id="LC2990" class="line" lang="plaintext"> _ZNK3bpp14RE08Nucleotide11getAlphabetEv@Base 2.4.1</span>
</pre>
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<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3044" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3018" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3044,7 +3018,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="3044" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3044
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<td class="diff-line-num new_line" data-linenumber="3018" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3018
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<pre style="margin: 0;"> <span id="LC3018" class="line" lang="plaintext"> _ZNK3bpp15DrawBranchEvent16getGraphicDeviceEv@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="3045" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3045
</td>
<td class="diff-line-num new_line" data-linenumber="3019" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3019
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<pre style="margin: 0;"> <span id="LC3019" class="line" lang="plaintext"> _ZNK3bpp15DrawBranchEvent9getCursorEv@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="3046" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3046
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<td class="diff-line-num new_line" data-linenumber="3020" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3020
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<pre style="margin: 0;"> <span id="LC3020" class="line" lang="plaintext"> _ZNK3bpp15DrawBranchEvent9getNodeIdEv@Base 2.4.1</span>
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<td class="diff-line-num old old_line" data-linenumber="3047" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3047
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<td class="diff-line-num new_line old" data-linenumber="3021" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3047" class="line" lang="plaintext"> _ZNK3bpp15LUDecompositionIdE5solveERKNS_6MatrixIdEERS3_@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3048" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3048
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<td class="diff-line-num new_line" data-linenumber="3021" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3021
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<pre style="margin: 0;"> <span id="LC3021" class="line" lang="plaintext"> _ZNK3bpp15NeighborJoining5cloneEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3049" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3049
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<td class="diff-line-num new_line" data-linenumber="3022" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3022
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<pre style="margin: 0;"> <span id="LC3022" class="line" lang="plaintext"> _ZNK3bpp15NeighborJoining7getNameB5cxx11Ev@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3050" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3050
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<td class="diff-line-num new_line" data-linenumber="3023" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3023
</td>
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<pre style="margin: 0;"> <span id="LC3023" class="line" lang="plaintext"> _ZNK3bpp15NucleicAlphabet7getSizeEv@Base 2.4.1</span>
</pre>
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<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3083" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3056" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3083,6 +3056,7 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="3083" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3083
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<td class="diff-line-num new_line" data-linenumber="3056" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3056
</td>
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<pre style="margin: 0;"> <span id="LC3056" class="line" lang="plaintext"> _ZNK3bpp17AbstractOptimizer23getDefaultStopConditionEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3084" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3084
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<td class="diff-line-num new_line" data-linenumber="3057" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3057
</td>
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<pre style="margin: 0;"> <span id="LC3057" class="line" lang="plaintext"> _ZNK3bpp17AbstractOptimizer35isMaximumNumberOfEvaluationsReachedEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3085" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3085
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<td class="diff-line-num new_line" data-linenumber="3058" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3058
</td>
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<pre style="margin: 0;"> <span id="LC3058" class="line" lang="plaintext"> _ZNK3bpp17AlphabetException11getAlphabetEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="3086" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="3059" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
3059
</td>
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<pre style="margin: 0;">+<span id="LC3059" class="line" lang="plaintext"> _ZNK3bpp17BrentOneDimension5cloneEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3086" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3086
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<td class="diff-line-num new_line" data-linenumber="3060" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3060
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3060" class="line" lang="plaintext"> _ZNK3bpp17CanonicalStateMap19getStateDescriptionB5cxx11Em@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3087" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3087
</td>
<td class="diff-line-num new_line" data-linenumber="3061" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3061
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3061" class="line" lang="plaintext"> _ZNK3bpp17CanonicalStateMap5cloneEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3088" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3088
</td>
<td class="diff-line-num new_line" data-linenumber="3062" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3062
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3062" class="line" lang="plaintext"> _ZNK3bpp17MvaFrequenciesSet11getAlphabetEv@Base 2.4.1</span>
</pre>
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</tr>
<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="3233" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -3233,7 +3207,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="3233" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3233
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<td class="diff-line-num new_line" data-linenumber="3207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3207
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3207" class="line" lang="plaintext"> _ZNK3bpp20SubstitutionModelSet14getModelStatesERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3234" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3234
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<td class="diff-line-num new_line" data-linenumber="3208" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3208
</td>
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<pre style="margin: 0;"> <span id="LC3208" class="line" lang="plaintext"> _ZNK3bpp20SubstitutionModelSet14getModelStatesEi@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3235" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3235
</td>
<td class="diff-line-num new_line" data-linenumber="3209" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3209
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3209" class="line" lang="plaintext"> _ZNK3bpp20SubstitutionModelSet14listModelNamesERSo@Base 2.4.1</span>
</pre>
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</tr>
<tr class="line_holder old" id="" style="line-height: 1.6;">
<td class="diff-line-num old old_line" data-linenumber="3236" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3236
</td>
<td class="diff-line-num new_line old" data-linenumber="3210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC3236" class="line" lang="plaintext"> _ZNK3bpp20SubstitutionModelSet15isFullySetUpForERKNS_4TreeEb@Base 2.4.1</span>
</pre>
</td>
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<td class="diff-line-num old_line" data-linenumber="3237" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3237
</td>
<td class="diff-line-num new_line" data-linenumber="3210" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3210
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3210" class="line" lang="plaintext"> _ZNK3bpp20SubstitutionModelSet16checkOrphanNodesERKNS_4TreeEb@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3238" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3238
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<td class="diff-line-num new_line" data-linenumber="3211" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3211
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC3211" class="line" lang="plaintext"> _ZNK3bpp20SubstitutionModelSet17checkOrphanModelsEb@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="3239" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3239
</td>
<td class="diff-line-num new_line" data-linenumber="3212" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
3212
</td>
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<pre style="margin: 0;"> <span id="LC3212" class="line" lang="plaintext"> _ZNK3bpp20SubstitutionModelSet17checkUnknownNodesERKNS_4TreeEb@Base 2.4.1</span>
</pre>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="3998" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4025,6 +3998,7 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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4025
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3998
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<pre style="margin: 0;"> <span id="LC3998" class="line" lang="plaintext"> _ZNK3bpp3Nhx5writeERKSt6vectorIPNS_4TreeESaIS3_EERSo@Base 2.4.1</span>
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4026
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3999
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<pre style="margin: 0;"> <span id="LC3999" class="line" lang="plaintext"> _ZNK3bpp3Nhx6write_ERKNS_4TreeERSo@Base 2.4.1</span>
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4027
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4000
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<pre style="margin: 0;"> <span id="LC4000" class="line" lang="plaintext"> _ZNK3bpp3Nhx6write_ERKSt6vectorIPNS_4TreeESaIS3_EERSo@Base 2.4.1</span>
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4001
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<pre style="margin: 0;">+<span id="LC4001" class="line" lang="plaintext"> _ZNK3bpp3RNY15getAlphabetTypeB5cxx11Ev@Base 2.4.1</span>
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4028
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4002
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<pre style="margin: 0;"> <span id="LC4002" class="line" lang="plaintext"> _ZNK3bpp3SSR5cloneEv@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="4029" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4029
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4003
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<pre style="margin: 0;"> <span id="LC4003" class="line" lang="plaintext"> _ZNK3bpp3SSR7getNameB5cxx11Ev@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="4030" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4030
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4004
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<pre style="margin: 0;"> <span id="LC4004" class="line" lang="plaintext"> _ZNK3bpp3T9210getdPij_dtEd@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="4322" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4296" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4322,12 +4296,9 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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4322
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4296
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<pre style="margin: 0;"> <span id="LC4296" class="line" lang="plaintext"> _ZNK3bpp9RowMatrixImE5cloneEv@Base 2.4.1</span>
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4323
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4297
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<pre style="margin: 0;"> <span id="LC4297" class="line" lang="plaintext"> _ZNK3bpp9RowMatrixImEclEmm@Base 2.4.1</span>
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4324
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4298
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<pre style="margin: 0;"> <span id="LC4298" class="line" lang="plaintext"> _ZNK9__gnu_cxx5__ops15_Iter_less_iterclINS_17__normal_iteratorIP12StringAndIntSt6vectorIS4_SaIS4_EEEES9_EEbT_T0_@Base 2.4.1</span>
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4325
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<pre style="margin: 0;">-<span id="LC4325" class="line" lang="plaintext"> _ZNKSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_St4lessIS5_ESaISt4pairIKS5_S5_EEE2atERS9_@Base 2.4.1</span>
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4326
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4299
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<pre style="margin: 0;"> <span id="LC4299" class="line" lang="plaintext"> _ZNKSt5ctypeIcE8do_widenEc@Base 2.4.1</span>
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4327
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4300
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<pre style="margin: 0;"> <span id="LC4300" class="line" lang="plaintext"> _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp20DiscreteDistributionEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_@Base 2.4.1</span>
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4328
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4301
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<pre style="margin: 0;"> <span id="LC4301" class="line" lang="plaintext"> _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_S5_ESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE4findERS7_@Base 2.4.1</span>
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4329
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<pre style="margin: 0;">-<span id="LC4329" class="line" lang="plaintext"> _ZNSt11_Deque_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED1Ev@Base 2.4.1</span>
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4330
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<pre style="margin: 0;">-<span id="LC4330" class="line" lang="plaintext"> _ZNSt11_Deque_baseINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 2.4.1</span>
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4331
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4302
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<pre style="margin: 0;"> <span id="LC4302" class="line" lang="plaintext"> _ZNSt13_Bvector_baseISaIbEE13_M_deallocateEv@Base 2.4.1</span>
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4332
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4303
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<pre style="margin: 0;"> <span id="LC4303" class="line" lang="plaintext"> _ZNSt14__shared_countILN9__gnu_cxx12_Lock_policyE2EEC1IN3bpp8StateMapESt14default_deleteIS5_EEEOSt10unique_ptrIT_T0_E@Base 2.4.1</span>
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4333
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4304
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<pre style="margin: 0;"> <span id="LC4304" class="line" lang="plaintext"> _ZNSt14__shared_countILN9__gnu_cxx12_Lock_policyE2EEC2IN3bpp8StateMapESt14default_deleteIS5_EEEOSt10unique_ptrIT_T0_E@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="4366" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4337" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4366,21 +4337,14 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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4366
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4337
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<pre style="margin: 0;"> <span id="LC4337" class="line" lang="plaintext"> _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIN9__gnu_cxx17__normal_iteratorIPKSt6vectorIdSaIdEES4_IS6_SaIS6_EEEEPS6_EET0_T_SE_SD_@Base 2.4.1</span>
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4367
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4338
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<pre style="margin: 0;"> <span id="LC4338" class="line" lang="plaintext"> _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIN9__gnu_cxx17__normal_iteratorIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS9_SaIS9_EEEESA_EET0_T_SG_SF_@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC4339" class="line" lang="plaintext"> _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIPKN3bpp12MutationPathEPS3_EET0_T_S8_S7_@Base 2.4.1</span>
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<pre style="margin: 0;">-<span id="LC4369" class="line" lang="plaintext"> _ZNSt20__uninitialized_copyILb0EE13__uninit_copyIPKN3bpp22AbstractTreeLikelihood36ConstNoPartitionSiteModelDescriptionEPS4_EET0_T_S9_S8_@Base 2.4.1</span>
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<pre style="margin: 0;">-<span id="LC4370" class="line" lang="plaintext"> _ZNSt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEPN3bpp20DiscreteDistributionESt4lessIS5_ESaISt4pairIKS5_S8_EEEixEOS5_@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC4345" class="line" lang="plaintext"> _ZNSt3mapIiN3bpp27DRASRTreeLikelihoodNodeDataESt4lessIiESaISt4pairIKiS1_EEEixERS5_@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC4349" class="line" lang="plaintext"> _ZNSt3mapIiSt6vectorIPN3bpp34RNonHomogeneousMixedTreeLikelihoodESaIS3_EESt4lessIiESaISt4pairIKiS5_EEEixERS9_@Base 2.4.1</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4388,11 +4352,7 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<pre style="margin: 0;"> <span id="LC4357" class="line" lang="plaintext"> _ZNSt3mapImmSt4lessImESaISt4pairIKmmEEEixERS3_@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC4358" class="line" lang="plaintext"> _ZNSt4pairIKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES5_EC1ERKS7_@Base 2.4.1</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4426,8 +4386,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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4426
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<pre style="margin: 0;"> <span id="LC4386" class="line" lang="plaintext"> _ZNSt6vectorIN3bpp7SimplexESaIS1_EED2Ev@Base 2.4.1</span>
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4387
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<pre style="margin: 0;"> <span id="LC4387" class="line" lang="plaintext"> _ZNSt6vectorIN3bpp7SimplexESaIS1_EEaSERKS3_@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC4388" class="line" lang="plaintext"> _ZNSt6vectorIN3bpp9RowMatrixIdEESaIS2_EE17_M_default_appendEm@Base 2.4.1</span>
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4391
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<pre style="margin: 0;"> <span id="LC4391" class="line" lang="plaintext"> _ZNSt6vectorIN3bpp9RowMatrixIdEESaIS2_EEaSERKS4_@Base 2.4.1</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4459,7 +4417,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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4417
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4461
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4419
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<pre style="margin: 0;"> <span id="LC4419" class="line" lang="plaintext"> _ZNSt6vectorIPKN3bpp4NodeESaIS3_EE17_M_realloc_insertIJS3_EEEvN9__gnu_cxx17__normal_iteratorIPS3_S5_EEDpOT_@Base 2.4.1</span>
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4463
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4464
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4421
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<pre style="margin: 0;"> <span id="LC4421" class="line" lang="plaintext"> _ZNSt6vectorIPKN3bpp6MatrixIdEESaIS4_EE12emplace_backIJS4_EEEvDpOT_@Base 2.4.1</span>
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4465
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4422
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<pre style="margin: 0;"> <span id="LC4422" class="line" lang="plaintext"> _ZNSt6vectorIPKN3bpp6MatrixIdEESaIS4_EE17_M_realloc_insertIJS4_EEEvN9__gnu_cxx17__normal_iteratorIPS4_S6_EEDpOT_@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4468" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4511,8 +4468,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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4511
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4468
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<pre style="margin: 0;"> <span id="LC4468" class="line" lang="plaintext"> _ZNSt6vectorIPN3bpp27DRHomogeneousTreeLikelihoodESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 2.4.1</span>
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4512
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4469
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<pre style="margin: 0;"> <span id="LC4469" class="line" lang="plaintext"> _ZNSt6vectorIPN3bpp34RNonHomogeneousMixedTreeLikelihoodESaIS2_EE12emplace_backIJS2_EEEvDpOT_@Base 2.4.1</span>
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4513
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4470
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<pre style="margin: 0;"> <span id="LC4470" class="line" lang="plaintext"> _ZNSt6vectorIPN3bpp34RNonHomogeneousMixedTreeLikelihoodESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 2.4.1</span>
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4514
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<pre style="margin: 0;">-<span id="LC4514" class="line" lang="plaintext"> _ZNSt6vectorIPN3bpp34RNonHomogeneousMixedTreeLikelihoodESaIS2_EEC1ERKS4_@Base 2.4.1</span>
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4515
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<pre style="margin: 0;">-<span id="LC4515" class="line" lang="plaintext"> _ZNSt6vectorIPN3bpp34RNonHomogeneousMixedTreeLikelihoodESaIS2_EEC2ERKS4_@Base 2.4.1</span>
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4516
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4471
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<pre style="margin: 0;"> <span id="LC4471" class="line" lang="plaintext"> _ZNSt6vectorIPN3bpp4NodeESaIS2_EE12emplace_backIJS2_EEEvDpOT_@Base 2.4.1</span>
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4517
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4472
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<pre style="margin: 0;"> <span id="LC4472" class="line" lang="plaintext"> _ZNSt6vectorIPN3bpp4NodeESaIS2_EE15_M_range_insertIN9__gnu_cxx17__normal_iteratorIPS2_S4_EEEEvS9_T_SA_St20forward_iterator_tag@Base 2.4.1</span>
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4518
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4473
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<pre style="margin: 0;"> <span id="LC4473" class="line" lang="plaintext"> _ZNSt6vectorIPN3bpp4NodeESaIS2_EE17_M_default_appendEm@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4475" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4520,7 +4475,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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4475
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<pre style="margin: 0;"> <span id="LC4475" class="line" lang="plaintext"> _ZNSt6vectorIPN3bpp4NodeESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 2.4.1</span>
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4476
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<pre style="margin: 0;"> <span id="LC4476" class="line" lang="plaintext"> _ZNSt6vectorIPN3bpp4NodeESaIS2_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS2_S4_EERS7_@Base 2.4.1</span>
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4522
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4477
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<pre style="margin: 0;"> <span id="LC4477" class="line" lang="plaintext"> _ZNSt6vectorIPN3bpp4NodeESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base 2.4.1</span>
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4523
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<pre style="margin: 0;">-<span id="LC4523" class="line" lang="plaintext"> _ZNSt6vectorIPN3bpp4NodeESaIS2_EE9push_backERKS2_@Base 2.4.1</span>
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4524
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4478
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<pre style="margin: 0;"> <span id="LC4478" class="line" lang="plaintext"> _ZNSt6vectorIPN3bpp4TreeESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 2.4.1</span>
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4525
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4479
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<pre style="margin: 0;"> <span id="LC4479" class="line" lang="plaintext"> _ZNSt6vectorIPN3bpp9OptimizerESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 2.4.1</span>
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4526
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4480
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<pre style="margin: 0;"> <span id="LC4480" class="line" lang="plaintext"> _ZNSt6vectorIPS_IdSaIdEESaIS2_EE12emplace_backIJS2_EEEvDpOT_@Base 2.4.1</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4528,8 +4482,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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4528
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4482
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<pre style="margin: 0;"> <span id="LC4482" class="line" lang="plaintext"> _ZNSt6vectorIPiSaIS0_EE12emplace_backIJS0_EEEvDpOT_@Base 2.4.1</span>
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4483
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<pre style="margin: 0;"> <span id="LC4483" class="line" lang="plaintext"> _ZNSt6vectorIPiSaIS0_EE17_M_default_appendEm@Base 2.4.1</span>
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4530
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4484
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<pre style="margin: 0;"> <span id="LC4484" class="line" lang="plaintext"> _ZNSt6vectorIPiSaIS0_EE17_M_realloc_insertIJRKS0_EEEvN9__gnu_cxx17__normal_iteratorIPS0_S2_EEDpOT_@Base 2.4.1</span>
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<pre style="margin: 0;">-<span id="LC4531" class="line" lang="plaintext"> _ZNSt6vectorIPiSaIS0_EEC1ERKS2_@Base 2.4.1</span>
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4532
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<pre style="margin: 0;">-<span id="LC4532" class="line" lang="plaintext"> _ZNSt6vectorIPiSaIS0_EEC2ERKS2_@Base 2.4.1</span>
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4533
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4485
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<pre style="margin: 0;"> <span id="LC4485" class="line" lang="plaintext"> _ZNSt6vectorIPiSaIS0_EEaSERKS2_@Base 2.4.1</span>
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4534
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4486
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<pre style="margin: 0;"> <span id="LC4486" class="line" lang="plaintext"> _ZNSt6vectorIS_IN3bpp9RowMatrixIdEESaIS2_EESaIS4_EE17_M_default_appendEm@Base 2.4.1</span>
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4535
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4487
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<pre style="margin: 0;"> <span id="LC4487" class="line" lang="plaintext"> _ZNSt6vectorIS_IN3bpp9RowMatrixIdEESaIS2_EESaIS4_EED1Ev@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="4558" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4510" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4558,7 +4510,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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4558
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4510
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<pre style="margin: 0;"> <span id="LC4510" class="line" lang="plaintext"> _ZNSt6vectorIS_IdSaIdEESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.4.1</span>
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4559
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4511
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<pre style="margin: 0;"> <span id="LC4511" class="line" lang="plaintext"> _ZNSt6vectorIS_IdSaIdEESaIS1_EE17_M_realloc_insertIJS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.4.1</span>
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4560
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4512
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<pre style="margin: 0;"> <span id="LC4512" class="line" lang="plaintext"> _ZNSt6vectorIS_IdSaIdEESaIS1_EE6resizeEm@Base 2.4.1</span>
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4561
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<pre style="margin: 0;">-<span id="LC4561" class="line" lang="plaintext"> _ZNSt6vectorIS_IdSaIdEESaIS1_EE7reserveEm@Base 2.4.1</span>
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4562
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4513
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<pre style="margin: 0;"> <span id="LC4513" class="line" lang="plaintext"> _ZNSt6vectorIS_IdSaIdEESaIS1_EEC1ERKS3_@Base 2.4.1</span>
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4563
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4514
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<pre style="margin: 0;"> <span id="LC4514" class="line" lang="plaintext"> _ZNSt6vectorIS_IdSaIdEESaIS1_EEC1EmRKS2_@Base 2.4.1</span>
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4564
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4515
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<pre style="margin: 0;"> <span id="LC4515" class="line" lang="plaintext"> _ZNSt6vectorIS_IdSaIdEESaIS1_EEC2ERKS3_@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="4570" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4521" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4570,14 +4521,8 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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4570
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4521
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<pre style="margin: 0;"> <span id="LC4521" class="line" lang="plaintext"> _ZNSt6vectorIS_IiSaIiEESaIS1_EED1Ev@Base 2.4.1</span>
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4571
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4522
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<pre style="margin: 0;"> <span id="LC4522" class="line" lang="plaintext"> _ZNSt6vectorIS_IiSaIiEESaIS1_EED2Ev@Base 2.4.1</span>
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4572
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4523
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<pre style="margin: 0;"> <span id="LC4523" class="line" lang="plaintext"> _ZNSt6vectorIS_IjSaIjEESaIS1_EE17_M_default_appendEm@Base 2.4.1</span>
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4573
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<pre style="margin: 0;">-<span id="LC4573" class="line" lang="plaintext"> _ZNSt6vectorIS_IjSaIjEESaIS1_EED1Ev@Base 2.4.1</span>
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4574
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<pre style="margin: 0;">-<span id="LC4574" class="line" lang="plaintext"> _ZNSt6vectorIS_IjSaIjEESaIS1_EED2Ev@Base 2.4.1</span>
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4575
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4524
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<pre style="margin: 0;"> <span id="LC4524" class="line" lang="plaintext"> _ZNSt6vectorIS_ImSaImEESaIS1_EE17_M_default_appendEm@Base 2.4.1</span>
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4576
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4525
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<pre style="margin: 0;"> <span id="LC4525" class="line" lang="plaintext"> _ZNSt6vectorIS_ImSaImEESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 2.4.1</span>
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4577
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<pre style="margin: 0;">-<span id="LC4577" class="line" lang="plaintext"> _ZNSt6vectorIS_ImSaImEESaIS1_EEC1ERKS3_@Base 2.4.1</span>
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4578
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4579
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4580
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4581
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4526
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<pre style="margin: 0;"> <span id="LC4526" class="line" lang="plaintext"> _ZNSt6vectorIS_ImSaImEESaIS1_EED1Ev@Base 2.4.1</span>
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4582
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4527
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<pre style="margin: 0;"> <span id="LC4527" class="line" lang="plaintext"> _ZNSt6vectorIS_ImSaImEESaIS1_EED2Ev@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="4583" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4583
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4528
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<pre style="margin: 0;"> <span id="LC4528" class="line" lang="plaintext"> _ZNSt6vectorISt10unique_ptrIN3bpp26CoreCodonSubstitutionModelESt14default_deleteIS2_EESaIS5_EE12emplace_backIJPS2_EEEvDpOT_@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="4586" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4531" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4586,6 +4531,8 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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4586
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4531
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<pre style="margin: 0;"> <span id="LC4531" class="line" lang="plaintext"> _ZNSt6vectorISt10unique_ptrIN3bpp26CoreCodonSubstitutionModelESt14default_deleteIS2_EESaIS5_EE17_M_realloc_insertIJS5_EEEvN9__gnu_cxx17__normal_iteratorIPS5_S7_EEDpOT_@Base 2.4.1</span>
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4587
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4532
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<pre style="margin: 0;"> <span id="LC4532" class="line" lang="plaintext"> _ZNSt6vectorISt10unique_ptrIN3bpp26CoreCodonSubstitutionModelESt14default_deleteIS2_EESaIS5_EED1Ev@Base 2.4.1</span>
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4588
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4533
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<pre style="margin: 0;"> <span id="LC4533" class="line" lang="plaintext"> _ZNSt6vectorISt10unique_ptrIN3bpp26CoreCodonSubstitutionModelESt14default_deleteIS2_EESaIS5_EED2Ev@Base 2.4.1</span>
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4534
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<pre style="margin: 0;">+<span id="LC4534" class="line" lang="plaintext"> _ZNSt6vectorISt10unique_ptrIN3bpp26ProbabilisticRewardMappingESt14default_deleteIS2_EESaIS5_EED1Ev@Base 2.4.1</span>
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4535
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<pre style="margin: 0;">+<span id="LC4535" class="line" lang="plaintext"> _ZNSt6vectorISt10unique_ptrIN3bpp26ProbabilisticRewardMappingESt14default_deleteIS2_EESaIS5_EED2Ev@Base 2.4.1</span>
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4589
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4536
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<pre style="margin: 0;"> <span id="LC4536" class="line" lang="plaintext"> _ZNSt6vectorISt3mapINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEbSt4lessIS6_ESaISt4pairIKS6_bEEESaISD_EE17_M_realloc_insertIJSD_EEEvN9__gnu_cxx17__normal_iteratorIPSD_SF_EEDpOT_@Base 2.4.1</span>
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4590
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4537
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<pre style="margin: 0;"> <span id="LC4537" class="line" lang="plaintext"> _ZNSt6vectorISt3setImSt4lessImESaImEESaIS4_EE17_M_realloc_insertIJRKS4_EEEvN9__gnu_cxx17__normal_iteratorIPS4_S6_EEDpOT_@Base 2.4.1</span>
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4591
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4538
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<pre style="margin: 0;"> <span id="LC4538" class="line" lang="plaintext"> _ZNSt6vectorISt3setImSt4lessImESaImEESaIS4_EED1Ev@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="4594" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4541" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4594,7 +4541,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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4594
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4541
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<pre style="margin: 0;"> <span id="LC4541" class="line" lang="plaintext"> _ZNSt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEdESaIS7_EE12emplace_backIJS7_EEEvDpOT_@Base 2.4.1</span>
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4595
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4542
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<pre style="margin: 0;"> <span id="LC4542" class="line" lang="plaintext"> _ZNSt6vectorISt4pairINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEdESaIS7_EE17_M_realloc_insertIJS7_EEEvN9__gnu_cxx17__normal_iteratorIPS7_S9_EEDpOT_@Base 2.4.1</span>
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4596
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4543
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<pre style="margin: 0;"> <span id="LC4543" class="line" lang="plaintext"> _ZNSt6vectorISt6bitsetILm21EESaIS1_EE17_M_default_appendEm@Base 2.4.1</span>
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4597
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<pre style="margin: 0;">-<span id="LC4597" class="line" lang="plaintext"> _ZNSt6vectorISt6bitsetILm21EESaIS1_EEaSERKS3_@Base 2.4.1</span>
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4598
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4544
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<pre style="margin: 0;"> <span id="LC4544" class="line" lang="plaintext"> _ZNSt6vectorIbSaIbEE13_M_insert_auxESt13_Bit_iteratorb@Base 2.4.1</span>
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4599
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4545
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<pre style="margin: 0;"> <span id="LC4545" class="line" lang="plaintext"> _ZNSt6vectorIbSaIbEE14_M_fill_insertESt13_Bit_iteratormb@Base 2.4.1</span>
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4600
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4546
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<pre style="margin: 0;"> <span id="LC4546" class="line" lang="plaintext"> _ZNSt6vectorIdSaIdEE12emplace_backIJdEEEvDpOT_@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="4618" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4564" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4618,7 +4564,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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4618
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4564
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<pre style="margin: 0;"> <span id="LC4564" class="line" lang="plaintext"> _ZNSt6vectorIiSaIiEE17_M_realloc_insertIJRKiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base 2.4.1</span>
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4619
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4565
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<pre style="margin: 0;"> <span id="LC4565" class="line" lang="plaintext"> _ZNSt6vectorIiSaIiEE17_M_realloc_insertIJiEEEvN9__gnu_cxx17__normal_iteratorIPiS1_EEDpOT_@Base 2.4.1</span>
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4620
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4566
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<pre style="margin: 0;"> <span id="LC4566" class="line" lang="plaintext"> _ZNSt6vectorIiSaIiEE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPiS1_EE@Base 2.4.1</span>
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<pre style="margin: 0;">-<span id="LC4621" class="line" lang="plaintext"> _ZNSt6vectorIiSaIiEE9push_backERKi@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC4568" class="line" lang="plaintext"> _ZNSt6vectorIiSaIiEEC1EmRKS0_@Base 2.4.1</span>
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4569
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<pre style="margin: 0;"> <span id="LC4569" class="line" lang="plaintext"> _ZNSt6vectorIiSaIiEEC2ERKS1_@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4572" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4627,8 +4572,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<pre style="margin: 0;"> <span id="LC4572" class="line" lang="plaintext"> _ZNSt6vectorIjSaIjEE12emplace_backIJjEEEvDpOT_@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC4573" class="line" lang="plaintext"> _ZNSt6vectorIjSaIjEE17_M_default_appendEm@Base 2.4.1</span>
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4629
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<pre style="margin: 0;"> <span id="LC4574" class="line" lang="plaintext"> _ZNSt6vectorIjSaIjEE17_M_realloc_insertIJjEEEvN9__gnu_cxx17__normal_iteratorIPjS1_EEDpOT_@Base 2.4.1</span>
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<pre style="margin: 0;">-<span id="LC4630" class="line" lang="plaintext"> _ZNSt6vectorIjSaIjEEC1ERKS1_@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC4576" class="line" lang="plaintext"> _ZNSt6vectorImSaImEE12emplace_backIJmEEEvDpOT_@Base 2.4.1</span>
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4577
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<pre style="margin: 0;"> <span id="LC4577" class="line" lang="plaintext"> _ZNSt6vectorImSaImEE17_M_default_appendEm@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4608" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4665,8 +4608,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<pre style="margin: 0;"> <span id="LC4608" class="line" lang="plaintext"> _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN3bpp8ClonableEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE8_M_eraseEPSt13_Rb_tree_nodeISB_E@Base 2.4.1</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4699,6 +4640,7 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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4699
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4640
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<pre style="margin: 0;"> <span id="LC4640" class="line" lang="plaintext"> _ZNSt8_Rb_treeIPKN3bpp4NodeESt4pairIKS3_St6vectorIS4_INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEdESaISD_EEESt10_Select1stISG_ESt4lessIS3_ESaISG_EE24_M_get_insert_unique_posERS5_@Base 2.4.1</span>
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4700
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4641
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<pre style="margin: 0;"> <span id="LC4641" class="line" lang="plaintext"> _ZNSt8_Rb_treeIPKN3bpp4NodeESt4pairIKS3_St6vectorIS4_INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEdESaISD_EEESt10_Select1stISG_ESt4lessIS3_ESaISG_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISG_ERS5_@Base 2.4.1</span>
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4701
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4642
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<pre style="margin: 0;"> <span id="LC4642" class="line" lang="plaintext"> _ZNSt8_Rb_treeIPKN3bpp4NodeESt4pairIKS3_St6vectorIS4_INSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEdESaISD_EEESt10_Select1stISG_ESt4lessIS3_ESaISG_EE8_M_eraseEPSt13_Rb_tree_nodeISG_E@Base 2.4.1</span>
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<pre style="margin: 0;">+<span id="LC4643" class="line" lang="plaintext"> _ZNSt8_Rb_treeIPKN3bpp4NodeESt4pairIKS3_dESt10_Select1stIS6_ESt4lessIS3_ESaIS6_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOS3_EESH_IJEEEEESt17_Rb_tree_iteratorIS6_ESt23_Rb_tree_const_iteratorIS6_EDpOT_@Base 2.4.1</span>
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4644
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<pre style="margin: 0;"> <span id="LC4644" class="line" lang="plaintext"> _ZNSt8_Rb_treeIPKN3bpp4NodeESt4pairIKS3_dESt10_Select1stIS6_ESt4lessIS3_ESaIS6_EE24_M_get_insert_unique_posERS5_@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC4645" class="line" lang="plaintext"> _ZNSt8_Rb_treeIPKN3bpp4NodeESt4pairIKS3_dESt10_Select1stIS6_ESt4lessIS3_ESaIS6_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS6_ERS5_@Base 2.4.1</span>
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4646
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<pre style="margin: 0;"> <span id="LC4646" class="line" lang="plaintext"> _ZNSt8_Rb_treeIPKN3bpp4NodeESt4pairIKS3_dESt10_Select1stIS6_ESt4lessIS3_ESaIS6_EE8_M_eraseEPSt13_Rb_tree_nodeIS6_E@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4666" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4724,12 +4666,14 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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4724
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4666
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<pre style="margin: 0;"> <span id="LC4666" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiN3bpp23DRTreeParsimonyNodeDataEESt10_Select1stIS4_ESt4lessIiESaIS4_EE8_M_eraseEPSt13_Rb_tree_nodeIS4_E@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC4668" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiN3bpp27DRASRTreeLikelihoodNodeDataEESt10_Select1stIS4_ESt4lessIiESaIS4_EE14_M_insert_nodeEPSt18_Rb_tree_node_baseSC_PSt13_Rb_tree_nodeIS4_E@Base 2.4.1</span>
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<pre style="margin: 0;">+<span id="LC4669" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiN3bpp27DRASRTreeLikelihoodNodeDataEESt10_Select1stIS4_ESt4lessIiESaIS4_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOiEESF_IJEEEEESt17_Rb_tree_iteratorIS4_ESt23_Rb_tree_const_iteratorIS4_EDpOT_@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC4670" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiN3bpp27DRASRTreeLikelihoodNodeDataEESt10_Select1stIS4_ESt4lessIiESaIS4_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESF_IJEEEEESt17_Rb_tree_iteratorIS4_ESt23_Rb_tree_const_iteratorIS4_EDpOT_@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC4671" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiN3bpp27DRASRTreeLikelihoodNodeDataEESt10_Select1stIS4_ESt4lessIiESaIS4_EE24_M_get_insert_unique_posERS1_@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC4672" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiN3bpp27DRASRTreeLikelihoodNodeDataEESt10_Select1stIS4_ESt4lessIiESaIS4_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS4_ERS1_@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC4674" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiN3bpp27DRASRTreeLikelihoodNodeDataEESt10_Select1stIS4_ESt4lessIiESaIS4_EE8_M_eraseEPSt13_Rb_tree_nodeIS4_E@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC4675" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiN3bpp28DRASDRTreeLikelihoodLeafDataEESt10_Select1stIS4_ESt4lessIiESaIS4_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOiEESF_IJEEEEESt17_Rb_tree_iteratorIS4_ESt23_Rb_tree_const_iteratorIS4_EDpOT_@Base 2.4.1</span>
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<pre style="margin: 0;">+<span id="LC4676" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiN3bpp28DRASDRTreeLikelihoodLeafDataEESt10_Select1stIS4_ESt4lessIiESaIS4_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESF_IJEEEEESt17_Rb_tree_iteratorIS4_ESt23_Rb_tree_const_iteratorIS4_EDpOT_@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC4677" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiN3bpp28DRASDRTreeLikelihoodLeafDataEESt10_Select1stIS4_ESt4lessIiESaIS4_EE24_M_get_insert_unique_posERS1_@Base 2.4.1</span>
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4734
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4678
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<pre style="margin: 0;"> <span id="LC4678" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiN3bpp28DRASDRTreeLikelihoodLeafDataEESt10_Select1stIS4_ESt4lessIiESaIS4_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS4_ERS1_@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="4735" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4735
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4679
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<pre style="margin: 0;"> <span id="LC4679" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiN3bpp28DRASDRTreeLikelihoodLeafDataEESt10_Select1stIS4_ESt4lessIiESaIS4_EE7_M_copyINSA_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS4_EPKSE_PSt18_Rb_tree_node_baseRT_@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="4751" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4695" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4751,6 +4695,7 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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4751
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4695
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<pre style="margin: 0;"> <span id="LC4695" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiPN3bpp8ClonableEESt10_Select1stIS5_ESt4lessIiESaIS5_EE24_M_get_insert_unique_posERS1_@Base 2.4.1</span>
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4752
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4696
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<pre style="margin: 0;"> <span id="LC4696" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiPN3bpp8ClonableEESt10_Select1stIS5_ESt4lessIiESaIS5_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS5_ERS1_@Base 2.4.1</span>
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4753
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<td class="diff-line-num new_line" data-linenumber="4697" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4697
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<pre style="margin: 0;"> <span id="LC4697" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiSt3mapIiSt6vectorImSaImEESt4lessIiESaIS0_IS1_S5_EEEESt10_Select1stISB_ES7_SaISB_EE14_M_insert_nodeEPSt18_Rb_tree_node_baseSH_PSt13_Rb_tree_nodeISB_E@Base 2.4.1</span>
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4698
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<pre style="margin: 0;">+<span id="LC4698" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiSt3mapIiSt6vectorImSaImEESt4lessIiESaIS0_IS1_S5_EEEESt10_Select1stISB_ES7_SaISB_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESK_IJEEEEESt17_Rb_tree_iteratorISB_ESt23_Rb_tree_const_iteratorISB_EDpOT_@Base 2.4.1</span>
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4754
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4699
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<pre style="margin: 0;"> <span id="LC4699" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiSt3mapIiSt6vectorImSaImEESt4lessIiESaIS0_IS1_S5_EEEESt10_Select1stISB_ES7_SaISB_EE24_M_get_insert_unique_posERS1_@Base 2.4.1</span>
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4755
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4700
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<pre style="margin: 0;"> <span id="LC4700" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiSt3mapIiSt6vectorImSaImEESt4lessIiESaIS0_IS1_S5_EEEESt10_Select1stISB_ES7_SaISB_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorISB_ERS1_@Base 2.4.1</span>
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4756
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4701
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<pre style="margin: 0;"> <span id="LC4701" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiSt3mapIiSt6vectorImSaImEESt4lessIiESaIS0_IS1_S5_EEEESt10_Select1stISB_ES7_SaISB_EE7_M_copyINSF_11_Alloc_nodeEEEPSt13_Rb_tree_nodeISB_EPKSJ_PSt18_Rb_tree_node_baseRT_@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="4762" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4707" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4762,19 +4707,18 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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4762
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4707
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<pre style="margin: 0;"> <span id="LC4707" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiSt6vectorIPN3bpp34RNonHomogeneousMixedTreeLikelihoodESaIS5_EEESt10_Select1stIS8_ESt4lessIiESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS1_@Base 2.4.1</span>
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4763
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4708
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<pre style="margin: 0;"> <span id="LC4708" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiSt6vectorIPN3bpp34RNonHomogeneousMixedTreeLikelihoodESaIS5_EEESt10_Select1stIS8_ESt4lessIiESaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E@Base 2.4.1</span>
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4764
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4709
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<pre style="margin: 0;"> <span id="LC4709" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiSt6vectorIS2_IS2_IdSaIdEESaIS4_EESaIS6_EEESt10_Select1stIS9_ESt4lessIiESaIS9_EE14_M_insert_nodeEPSt18_Rb_tree_node_baseSH_PSt13_Rb_tree_nodeIS9_E@Base 2.4.1</span>
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4710
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<pre style="margin: 0;">+<span id="LC4710" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiSt6vectorIS2_IS2_IdSaIdEESaIS4_EESaIS6_EEESt10_Select1stIS9_ESt4lessIiESaIS9_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOiEESK_IJEEEEESt17_Rb_tree_iteratorIS9_ESt23_Rb_tree_const_iteratorIS9_EDpOT_@Base 2.4.1</span>
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4711
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<pre style="margin: 0;">+<span id="LC4711" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiSt6vectorIS2_IS2_IdSaIdEESaIS4_EESaIS6_EEESt10_Select1stIS9_ESt4lessIiESaIS9_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS1_EESK_IJEEEEESt17_Rb_tree_iteratorIS9_ESt23_Rb_tree_const_iteratorIS9_EDpOT_@Base 2.4.1</span>
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4765
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4712
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<pre style="margin: 0;"> <span id="LC4712" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiSt6vectorIS2_IS2_IdSaIdEESaIS4_EESaIS6_EEESt10_Select1stIS9_ESt4lessIiESaIS9_EE24_M_get_insert_unique_posERS1_@Base 2.4.1</span>
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4766
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4713
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<pre style="margin: 0;"> <span id="LC4713" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiSt6vectorIS2_IS2_IdSaIdEESaIS4_EESaIS6_EEESt10_Select1stIS9_ESt4lessIiESaIS9_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS9_ERS1_@Base 2.4.1</span>
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4767
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4714
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<pre style="margin: 0;"> <span id="LC4714" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiSt6vectorIS2_IS2_IdSaIdEESaIS4_EESaIS6_EEESt10_Select1stIS9_ESt4lessIiESaIS9_EE7_M_copyINSF_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS9_EPKSJ_PSt18_Rb_tree_node_baseRT_@Base 2.4.1</span>
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4768
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4715
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<pre style="margin: 0;"> <span id="LC4715" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiSt6vectorIS2_IS2_IdSaIdEESaIS4_EESaIS6_EEESt10_Select1stIS9_ESt4lessIiESaIS9_EE7_M_copyINSF_20_Reuse_or_alloc_nodeEEEPSt13_Rb_tree_nodeIS9_EPKSJ_PSt18_Rb_tree_node_baseRT_@Base 2.4.1</span>
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4769
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4716
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4724
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<pre style="margin: 0;"> <span id="LC4724" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiSt6vectorISt6bitsetILm21EESaIS4_EEESt10_Select1stIS7_ESt4lessIiESaIS7_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS7_ERS1_@Base 2.4.1</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4792,7 +4736,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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4796
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4741
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<pre style="margin: 0;"> <span id="LC4741" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiSt6vectorIjSaIjEEESt10_Select1stIS5_ESt4lessIiESaIS5_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS5_ERS1_@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="4800" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4743" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4800,6 +4743,7 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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4800
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<pre style="margin: 0;"> <span id="LC4744" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiSt6vectorImSaImEEESt10_Select1stIS5_ESt4lessIiESaIS5_EE14_M_insert_nodeEPSt18_Rb_tree_node_baseSD_PSt13_Rb_tree_nodeIS5_E@Base 2.4.1</span>
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<pre style="margin: 0;"> <span id="LC4745" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiSt6vectorImSaImEEESt10_Select1stIS5_ESt4lessIiESaIS5_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJOiEESG_IJEEEEESt17_Rb_tree_iteratorIS5_ESt23_Rb_tree_const_iteratorIS5_EDpOT_@Base 2.4.1</span>
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4804
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<pre style="margin: 0;"> <span id="LC4748" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiSt6vectorImSaImEEESt10_Select1stIS5_ESt4lessIiESaIS5_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS5_ERS1_@Base 2.4.1</span>
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4805
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4749
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<pre style="margin: 0;"> <span id="LC4749" class="line" lang="plaintext"> _ZNSt8_Rb_treeIiSt4pairIKiSt6vectorImSaImEEESt10_Select1stIS5_ESt4lessIiESaIS5_EE7_M_copyINSB_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS5_EPKSF_PSt18_Rb_tree_node_baseRT_@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="4871" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4815" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4871,7 +4815,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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4871
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4815
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<pre style="margin: 0;"> <span id="LC4815" class="line" lang="plaintext"> _ZNSt8_Rb_treeImmSt9_IdentityImESt4lessImESaImEEaSERKS5_@Base 2.4.1</span>
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4872
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4816
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<pre style="margin: 0;"> <span id="LC4816" class="line" lang="plaintext"> _ZNSt8_Rb_treeIsSt4pairIKsNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIsESaIS8_EE7_M_copyINSE_11_Alloc_nodeEEEPSt13_Rb_tree_nodeIS8_EPKSI_PSt18_Rb_tree_node_baseRT_@Base 2.4.1</span>
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4873
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4817
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<pre style="margin: 0;"> <span id="LC4817" class="line" lang="plaintext"> _ZNSt8_Rb_treeIsSt4pairIKsNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEESt10_Select1stIS8_ESt4lessIsESaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E@Base 2.4.1</span>
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4874
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<pre style="margin: 0;">-<span id="LC4874" class="line" lang="plaintext"> _ZSt10__pop_heapIN9__gnu_cxx17__normal_iteratorIP12StringAndIntSt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_less_iterEEvT_SA_SA_RT0_@Base 2.4.1</span>
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4875
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4818
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<pre style="margin: 0;"> <span id="LC4818" class="line" lang="plaintext"> _ZSt10scientificRSt8ios_base@Base 2.4.1</span>
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4876
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4819
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<pre style="margin: 0;"> <span id="LC4819" class="line" lang="plaintext"> _ZSt11__make_heapIN9__gnu_cxx17__normal_iteratorIP12StringAndIntSt6vectorIS2_SaIS2_EEEENS0_5__ops15_Iter_less_iterEEvT_SA_RT0_@Base 2.4.1</span>
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4877
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4820
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<pre style="margin: 0;"> <span id="LC4820" class="line" lang="plaintext"> _ZSt11__make_heapIN9__gnu_cxx17__normal_iteratorIPN3bpp12SitePatterns12SortableSiteESt6vectorIS4_SaIS4_EEEENS0_5__ops15_Iter_less_iterEEvT_SC_RT0_@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="4897" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="4840" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -4897,12 +4840,10 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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4897
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4840
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<pre style="margin: 0;"> <span id="LC4840" class="line" lang="plaintext"> _ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIP12StringAndIntSt6vectorIS2_SaIS2_EEEENS0_5__ops14_Val_less_iterEEvT_T0_@Base 2.4.1</span>
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4898
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4841
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<pre style="margin: 0;"> <span id="LC4841" class="line" lang="plaintext"> _ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIPN3bpp12SitePatterns12SortableSiteESt6vectorIS4_SaIS4_EEEENS0_5__ops14_Val_less_iterEEvT_T0_@Base 2.4.1</span>
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4899
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4842
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<pre style="margin: 0;"> <span id="LC4842" class="line" lang="plaintext"> _ZSt25__unguarded_linear_insertIN9__gnu_cxx17__normal_iteratorIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEENS0_5__ops14_Val_less_iterEEvT_T0_@Base 2.4.1</span>
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4900
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<pre style="margin: 0;">-<span id="LC4900" class="line" lang="plaintext"> _ZSt4fillSt13_Bit_iteratorS_RKb@Base 2.4.1</span>
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4843
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<pre style="margin: 0;"> <span id="LC4843" class="line" lang="plaintext"> _ZSt4swapI12StringAndIntENSt9enable_ifIXsrSt6__and_IJSt6__not_ISt15__is_tuple_likeIT_EESt21is_move_constructibleIS5_ESt18is_move_assignableIS5_EEE5valueEvE4typeERS5_SF_@Base 2.4.1</span>
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4902
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4844
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<pre style="margin: 0;"> <span id="LC4844" class="line" lang="plaintext"> _ZSt5fixedRSt8ios_base@Base 2.4.1</span>
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4903
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<pre style="margin: 0;"> <span id="LC4845" class="line" lang="plaintext"> _ZSt9__find_ifIN9__gnu_cxx17__normal_iteratorIPNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt6vectorIS7_SaIS7_EEEENS0_5__ops16_Iter_equals_valIKS7_EEET_SH_SH_T0_St26random_access_iterator_tag@Base 2.4.1</span>
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4904
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<td class="diff-line-num new_line" data-linenumber="4846" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4846
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<pre style="margin: 0;"> <span id="LC4846" class="line" lang="plaintext"> _ZSt9__find_ifIN9__gnu_cxx17__normal_iteratorIPPN3bpp19TreeDrawingListenerESt6vectorIS4_SaIS4_EEEENS0_5__ops16_Iter_equals_valIKS4_EEET_SE_SE_T0_St26random_access_iterator_tag@Base 2.4.1</span>
</pre>
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4905
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<pre style="margin: 0;">-<span id="LC4905" class="line" lang="plaintext"> _ZSt9__find_ifIN9__gnu_cxx17__normal_iteratorIPPN3bpp4NodeESt6vectorIS4_SaIS4_EEEENS0_5__ops16_Iter_equals_valIKS4_EEET_SE_SE_T0_St26random_access_iterator_tag@Base 2.4.1</span>
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4906
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4847
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<pre style="margin: 0;"> <span id="LC4847" class="line" lang="plaintext"> _ZSt9__find_ifIN9__gnu_cxx17__normal_iteratorIPiSt6vectorIiSaIiEEEENS0_5__ops16_Iter_equals_valIKiEEET_SB_SB_T0_St26random_access_iterator_tag@Base 2.4.1</span>
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4907
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<td class="diff-line-num new_line" data-linenumber="4848" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4848
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<pre style="margin: 0;"> <span id="LC4848" class="line" lang="plaintext"> _ZSteqIcEN9__gnu_cxx11__enable_ifIXsrSt9__is_charIT_E7__valueEbE6__typeERKNSt7__cxx1112basic_stringIS3_St11char_traitsIS3_ESaIS3_EEESE_@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="4908" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4908
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<td class="diff-line-num new_line" data-linenumber="4849" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
4849
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<pre style="margin: 0;"> <span id="LC4849" class="line" lang="plaintext"> _ZStplIcSt11char_traitsIcESaIcEENSt7__cxx1112basic_stringIT_T0_T1_EEOS8_PKS5_@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="6539" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="6480" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6539,6 +6480,7 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="6539" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6539
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<td class="diff-line-num new_line" data-linenumber="6480" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6480
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC6480" class="line" lang="plaintext"> _ZTch0_v0_n248_NK3bpp4MG945cloneEv@Base 2.4.1</span>
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6540
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6481
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<pre style="margin: 0;"> <span id="LC6481" class="line" lang="plaintext"> _ZTch0_v0_n248_NK3bpp4YN985cloneEv@Base 2.4.1</span>
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6541
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6482
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC6482" class="line" lang="plaintext"> _ZTch0_v0_n280_NK3bpp13MetaOptimizer5cloneEv@Base 2.4.1</span>
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6483
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<pre style="margin: 0;">+<span id="LC6483" class="line" lang="plaintext"> _ZTch0_v0_n280_NK3bpp17BrentOneDimension5cloneEv@Base 2.4.1</span>
</pre>
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6542
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6484
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC6484" class="line" lang="plaintext"> _ZTch0_v0_n280_NK3bpp21PseudoNewtonOptimizer5cloneEv@Base 2.4.1</span>
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6543
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6485
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<pre style="margin: 0;"> <span id="LC6485" class="line" lang="plaintext"> _ZTch0_v0_n40_N3bpp26RHomogeneousTreeLikelihood17getLikelihoodDataEv@Base 2.4.1</span>
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6544
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6486
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<pre style="margin: 0;"> <span id="LC6486" class="line" lang="plaintext"> _ZTch0_v0_n40_N3bpp27DRHomogeneousTreeLikelihood17getLikelihoodDataEv@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="6566" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="6508" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6566,6 +6508,7 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="6566" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6566
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6508
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<pre style="margin: 0;"> <span id="LC6508" class="line" lang="plaintext"> _ZTch0_v0_n40_NK3bpp15StlOutputStream5cloneEv@Base 2.4.1</span>
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6567
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6509
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC6509" class="line" lang="plaintext"> _ZTch0_v0_n40_NK3bpp16BranchLikelihood5cloneEv@Base 2.4.1</span>
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6568
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6510
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<pre style="margin: 0;"> <span id="LC6510" class="line" lang="plaintext"> _ZTch0_v0_n40_NK3bpp16GCFrequenciesSet5cloneEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="6569" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="6511" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
6511
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<pre style="margin: 0;">+<span id="LC6511" class="line" lang="plaintext"> _ZTch0_v0_n40_NK3bpp17BrentOneDimension5cloneEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="6569" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6569
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<td class="diff-line-num new_line" data-linenumber="6512" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6512
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<pre style="margin: 0;"> <span id="LC6512" class="line" lang="plaintext"> _ZTch0_v0_n40_NK3bpp17CanonicalStateMap5cloneEv@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="6570" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6570
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<td class="diff-line-num new_line" data-linenumber="6513" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6513
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<pre style="margin: 0;"> <span id="LC6513" class="line" lang="plaintext"> _ZTch0_v0_n40_NK3bpp17MvaFrequenciesSet5cloneEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="6571" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6571
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<td class="diff-line-num new_line" data-linenumber="6514" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
6514
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC6514" class="line" lang="plaintext"> _ZTch0_v0_n40_NK3bpp17OptimizationTools13ScaleFunction5cloneEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="7190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7190,6 +7133,7 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="7190" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7190
</td>
<td class="diff-line-num new_line" data-linenumber="7133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7133
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC7133" class="line" lang="plaintext"> _ZTcv0_n32_v0_n248_NK3bpp4MG945cloneEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="7191" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7191
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<td class="diff-line-num new_line" data-linenumber="7134" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7134
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC7134" class="line" lang="plaintext"> _ZTcv0_n32_v0_n248_NK3bpp4YN985cloneEv@Base 2.4.1</span>
</pre>
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7192
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<td class="diff-line-num new_line" data-linenumber="7135" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7135
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<pre style="margin: 0;"> <span id="LC7135" class="line" lang="plaintext"> _ZTcv0_n32_v0_n280_NK3bpp13MetaOptimizer5cloneEv@Base 2.4.1</span>
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<td class="diff-line-num new old_line" data-linenumber="7193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="7136" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7136
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<pre style="margin: 0;">+<span id="LC7136" class="line" lang="plaintext"> _ZTcv0_n32_v0_n280_NK3bpp17BrentOneDimension5cloneEv@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="7193" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7193
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<td class="diff-line-num new_line" data-linenumber="7137" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7137
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<pre style="margin: 0;"> <span id="LC7137" class="line" lang="plaintext"> _ZTcv0_n32_v0_n280_NK3bpp21PseudoNewtonOptimizer5cloneEv@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="7194" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7194
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<td class="diff-line-num new_line" data-linenumber="7138" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7138
</td>
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<pre style="margin: 0;"> <span id="LC7138" class="line" lang="plaintext"> _ZTcv0_n32_v0_n40_NK3bpp10BppBoolean5cloneEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="7195" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7195
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<td class="diff-line-num new_line" data-linenumber="7139" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7139
</td>
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<pre style="margin: 0;"> <span id="LC7139" class="line" lang="plaintext"> _ZTcv0_n32_v0_n40_NK3bpp11LG10_EX_EHO13EmbeddedModel5cloneEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="7213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="7157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -7213,6 +7157,7 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="7213" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7213
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<td class="diff-line-num new_line" data-linenumber="7157" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7157
</td>
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<pre style="margin: 0;"> <span id="LC7157" class="line" lang="plaintext"> _ZTcv0_n32_v0_n40_NK3bpp15StlOutputStream5cloneEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="7214" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7214
</td>
<td class="diff-line-num new_line" data-linenumber="7158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7158
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<pre style="margin: 0;"> <span id="LC7158" class="line" lang="plaintext"> _ZTcv0_n32_v0_n40_NK3bpp16BranchLikelihood5cloneEv@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="7215" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7215
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<td class="diff-line-num new_line" data-linenumber="7159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7159
</td>
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<pre style="margin: 0;"> <span id="LC7159" class="line" lang="plaintext"> _ZTcv0_n32_v0_n40_NK3bpp16GCFrequenciesSet5cloneEv@Base 2.4.1</span>
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<td class="diff-line-num new old_line" data-linenumber="7216" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
</td>
<td class="diff-line-num new new_line" data-linenumber="7160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
7160
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<pre style="margin: 0;">+<span id="LC7160" class="line" lang="plaintext"> _ZTcv0_n32_v0_n40_NK3bpp17BrentOneDimension5cloneEv@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="7216" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7216
</td>
<td class="diff-line-num new_line" data-linenumber="7161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7161
</td>
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<pre style="margin: 0;"> <span id="LC7161" class="line" lang="plaintext"> _ZTcv0_n32_v0_n40_NK3bpp17CanonicalStateMap5cloneEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="7217" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7217
</td>
<td class="diff-line-num new_line" data-linenumber="7162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7162
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<pre style="margin: 0;"> <span id="LC7162" class="line" lang="plaintext"> _ZTcv0_n32_v0_n40_NK3bpp17MvaFrequenciesSet5cloneEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="7218" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7218
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<td class="diff-line-num new_line" data-linenumber="7163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
7163
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<pre style="margin: 0;"> <span id="LC7163" class="line" lang="plaintext"> _ZTcv0_n32_v0_n40_NK3bpp17OptimizationTools13ScaleFunction5cloneEv@Base 2.4.1</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="8198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="8143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8198,10 +8143,10 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="8198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8198
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<td class="diff-line-num new_line" data-linenumber="8143" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8143
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<pre style="margin: 0;"> <span id="LC8143" class="line" lang="plaintext"> _ZTv0_n24_N3bpp23FullCodonFrequenciesSetD1Ev@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="8199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8199
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<td class="diff-line-num new_line" data-linenumber="8144" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8144
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8144" class="line" lang="plaintext"> _ZTv0_n24_N3bpp23MarkovModulatedStateMapD0Ev@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="8200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8200
</td>
<td class="diff-line-num new_line" data-linenumber="8145" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8145
</td>
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<pre style="margin: 0;"> <span id="LC8145" class="line" lang="plaintext"> _ZTv0_n24_N3bpp23MarkovModulatedStateMapD1Ev@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="8201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
8201
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<td class="diff-line-num new_line old" data-linenumber="8146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC8201" class="line" lang="plaintext"> _ZTv0_n24_N3bpp23ParametersStopConditionD1Ev@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="8202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8202
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<td class="diff-line-num new_line" data-linenumber="8146" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8146
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8146" class="line" lang="plaintext"> _ZTv0_n24_N3bpp23VectorSequenceContainerD1Ev@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="8203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8203
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<td class="diff-line-num new_line" data-linenumber="8147" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8147
</td>
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<pre style="margin: 0;"> <span id="LC8147" class="line" lang="plaintext"> _ZTv0_n24_N3bpp24BppOFrequenciesSetFormatD0Ev@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="8204" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8204
</td>
<td class="diff-line-num new_line" data-linenumber="8148" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8148
</td>
<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8148" class="line" lang="plaintext"> _ZTv0_n24_N3bpp24BppOFrequenciesSetFormatD1Ev@Base 2.4.1</span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="8205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="8149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8149
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<pre style="margin: 0;">+<span id="LC8149" class="line" lang="plaintext"> _ZTv0_n24_N3bpp24BppOParametrizableFormatD0Ev@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="8205" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8205
</td>
<td class="diff-line-num new_line" data-linenumber="8150" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8150
</td>
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<pre style="margin: 0;"> <span id="LC8150" class="line" lang="plaintext"> _ZTv0_n24_N3bpp24ConstantRateDistributionD0Ev@Base 2.4.1</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="8206" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8206
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<td class="diff-line-num new_line" data-linenumber="8151" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8151
</td>
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<pre style="margin: 0;"> <span id="LC8151" class="line" lang="plaintext"> _ZTv0_n24_N3bpp24ConstantRateDistributionD1Ev@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="8207" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8207
</td>
<td class="diff-line-num new_line" data-linenumber="8152" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8152
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<pre style="margin: 0;"> <span id="LC8152" class="line" lang="plaintext"> _ZTv0_n24_N3bpp24DRASDRTreeLikelihoodDataD0Ev@Base 2.4.1</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="8253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="8198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -8253,7 +8198,6 @@ libbpp-phyl.so.12 libbpp-phyl12 #MINVER#</td>
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<td class="diff-line-num old_line" data-linenumber="8253" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8253
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<td class="diff-line-num new_line" data-linenumber="8198" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8198
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<pre style="margin: 0;"> <span id="LC8198" class="line" lang="plaintext"> _ZTv0_n24_N3bpp26RHomogeneousTreeLikelihoodD0Ev@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="8254" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8254
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<td class="diff-line-num new_line" data-linenumber="8199" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8199
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<pre style="margin: 0;"> <span id="LC8199" class="line" lang="plaintext"> _ZTv0_n24_N3bpp26RHomogeneousTreeLikelihoodD1Ev@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="8255" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8255
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<td class="diff-line-num new_line" data-linenumber="8200" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8200
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<pre style="margin: 0;"> <span id="LC8200" class="line" lang="plaintext"> _ZTv0_n24_N3bpp26SimpleDiscreteDistributionD0Ev@Base 2.4.1</span>
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<td class="diff-line-num old old_line" data-linenumber="8256" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
8256
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<td class="diff-line-num new_line old" data-linenumber="8201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC8256" class="line" lang="plaintext"> _ZTv0_n24_N3bpp26SimpleDiscreteDistributionD1Ev@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="8257" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8257
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<td class="diff-line-num new_line" data-linenumber="8201" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8201
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<pre style="margin: 0;"> <span id="LC8201" class="line" lang="plaintext"> _ZTv0_n24_N3bpp27BppOSubstitutionModelFormatD0Ev@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="8258" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8258
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<td class="diff-line-num new_line" data-linenumber="8202" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8202
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<pre style="margin: 0;"> <span id="LC8202" class="line" lang="plaintext"> _ZTv0_n24_N3bpp27BppOSubstitutionModelFormatD1Ev@Base 2.4.1</span>
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<td class="diff-line-num old_line" data-linenumber="8259" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8259
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<td class="diff-line-num new_line" data-linenumber="8203" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
8203
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<pre style="margin: 0;"> <span id="LC8203" class="line" lang="plaintext"> _ZTv0_n24_N3bpp27CodonAdHocSubstitutionModelD0Ev@Base 2.4.1</span>
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