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<h3>
Steffen Möller pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/cnvkit">Debian Med / cnvkit</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/cnvkit/commit/eec2719953a8a5436f121a8c65f8918494515255">eec27199</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-08-28T17:29:16Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.9.6</pre>
</li>
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<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#561b88e19de321ca62c7590bbb350765fb110905">
README.rst
</a>
</li>
<li class="file-stats">
<a href="#42d036b285f793fa4706218270f28c4e0af74569">
cnvlib/_version.py
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</li>
<li class="file-stats">
<a href="#023ef3cf31e96bcfb114b17e9eeee40b3559216c">
cnvlib/antitarget.py
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</li>
<li class="file-stats">
<a href="#15480036fba0b7dad855fda6856199d0684fa1c9">
cnvlib/batch.py
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</li>
<li class="file-stats">
<a href="#37071ebf7e39e57e21ff893de63e92a9b7f6fcba">
cnvlib/commands.py
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</li>
<li class="file-stats">
<a href="#b1c2e997cbcbc150dfbb18cabfe5fbefc6fe41ce">
cnvlib/coverage.py
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<li class="file-stats">
<a href="#e0b9b6c135ef19da5b4d4718f3f11edff2251b58">
cnvlib/export.py
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<li class="file-stats">
<a href="#d5de4c64ce69f26a9edcef51de9217f0782e4cd5">
cnvlib/import_rna.py
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<li class="file-stats">
<a href="#53cf62a516f30d088c59651d6a2d958620dd5fbc">
cnvlib/rna.py
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<li class="file-stats">
<a href="#042ad1cb073aba7f730f360c07cf2df6491e983a">
cnvlib/samutil.py
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<li class="file-stats">
<a href="#f1f7d899f70bf68ebb7f625ec2ac7532559cd37d">
cnvlib/scatter.py
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<li class="file-stats">
<a href="#2b33ccf937d24b40fb7480b3013a15978923df38">
cnvlib/segmentation/__init__.py
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<li class="file-stats">
<a href="#fc9b3012d7fdb7332ab0329838b88d8ca3521557">
cnvlib/segmentation/cbs.py
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<li class="file-stats">
<a href="#9951acd8a21196ec3512bffc8d1fb0f94f705d3c">
cnvlib/segmentation/flasso.py
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<li class="file-stats">
<a href="#9b34e9846c222fbc2867cbaffe1fffd109acc62b">
cnvlib/segmentation/hmm.py
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<li class="file-stats">
<a href="#0951eeefdf2ea319d076d925c8c0f472cce1366e">
<span class="new-file">
+
cnvlib/segmentation/hmm_learn.py
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</li>
<li class="file-stats">
<a href="#2dca27b497dd001c9f70173febefc2ff0c9734b7">
cnvlib/vary.py
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<li class="file-stats">
<a href="#4455ea4c28397fb0744fe9965b258e3be7c5bf78">
devtools/conda-recipe/meta.yaml
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<li class="file-stats">
<a href="#1bbcd8980c541f52998ccf56da078edd2ca6a2d0">
doc/index.rst
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<li class="file-stats">
<a href="#432eccbf403c433ef4c5827f07985f42e5e84726">
doc/nonhybrid.rst
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</li>
<li class="file-stats">
<a href="#9de64de0c6a31e3d551cbbbab0b84ae8d4b2a60d">
doc/pipeline.rst
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<li class="file-stats">
<a href="#8ffde13df31f212345642ccfa4755f3bd99e7e61">
docker/Dockerfile
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</li>
<li class="file-stats">
<a href="#9fa936d3ed63d2a4fe12751cc15f211fdcc8a505">
scripts/cnv_expression_correlate.py
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</li>
<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
</a>
</li>
<li class="file-stats">
<a href="#c8e0ab1b5fb1e9df495f7ab12a38316201fb89ec">
skgenome/gary.py
</a>
</li>
<li class="file-stats">
<a href="#af4aa75c1234fedbcee4a101a5adfd3e5b9a9570">
skgenome/intersect.py
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</li>
<li class="file-stats">
<a href="#5bb655e42cff74f6231cf30978df1b1d1123f09b">
skgenome/tabio/bedio.py
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</li>
<li class="file-stats">
<a href="#712e71c07acb8dc4d63292c4492b104fcaa173c4">
skgenome/tabio/genepred.py
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</li>
<li class="file-stats">
<a href="#1e1000175ac97a54e3f4e28127f8c144fd77db5c">
skgenome/tabio/gff.py
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</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
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