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<h3>
Steffen Möller pushed to branch master
at <a href="https://salsa.debian.org/med-team/cnvkit">Debian Med / cnvkit</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/cnvkit/commit/eec2719953a8a5436f121a8c65f8918494515255">eec27199</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-08-28T17:29:16Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.9.6</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cnvkit/commit/38731f108668bb86ec6e77da31dca5ce2940952c">38731f10</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-08-28T17:30:29Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/0.9.6'
Update to upstream version '0.9.6'
with Debian dir 547c4eda704fc5723512fb41b77391cdb00359dc</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cnvkit/commit/dce590e59afd39075fbfe0fb13a66f7bc5f41e53">dce590e5</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-08-28T17:30:29Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cnvkit/commit/5285b22c744648de4dceaed866bc79a1d27a544a">5285b22c</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-08-28T17:30:29Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper-compat 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cnvkit/commit/33f278f9b0cff2000fa970523328a163376e57d9">33f278f9</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-08-28T17:30:33Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.4.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/cnvkit/commit/48dcd34be816b15d63b3fdc2edae9d18bc902ee4">48dcd34b</a></strong>
<div>
<span>by Steffen Moeller</span>
<i>at 2019-08-29T12:23:14Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Waiting for new dependency python3-pomegranate
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#561b88e19de321ca62c7590bbb350765fb110905">
README.rst
</a>
</li>
<li class="file-stats">
<a href="#42d036b285f793fa4706218270f28c4e0af74569">
cnvlib/_version.py
</a>
</li>
<li class="file-stats">
<a href="#023ef3cf31e96bcfb114b17e9eeee40b3559216c">
cnvlib/antitarget.py
</a>
</li>
<li class="file-stats">
<a href="#15480036fba0b7dad855fda6856199d0684fa1c9">
cnvlib/batch.py
</a>
</li>
<li class="file-stats">
<a href="#37071ebf7e39e57e21ff893de63e92a9b7f6fcba">
cnvlib/commands.py
</a>
</li>
<li class="file-stats">
<a href="#b1c2e997cbcbc150dfbb18cabfe5fbefc6fe41ce">
cnvlib/coverage.py
</a>
</li>
<li class="file-stats">
<a href="#e0b9b6c135ef19da5b4d4718f3f11edff2251b58">
cnvlib/export.py
</a>
</li>
<li class="file-stats">
<a href="#d5de4c64ce69f26a9edcef51de9217f0782e4cd5">
cnvlib/import_rna.py
</a>
</li>
<li class="file-stats">
<a href="#53cf62a516f30d088c59651d6a2d958620dd5fbc">
cnvlib/rna.py
</a>
</li>
<li class="file-stats">
<a href="#042ad1cb073aba7f730f360c07cf2df6491e983a">
cnvlib/samutil.py
</a>
</li>
<li class="file-stats">
<a href="#f1f7d899f70bf68ebb7f625ec2ac7532559cd37d">
cnvlib/scatter.py
</a>
</li>
<li class="file-stats">
<a href="#2b33ccf937d24b40fb7480b3013a15978923df38">
cnvlib/segmentation/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#fc9b3012d7fdb7332ab0329838b88d8ca3521557">
cnvlib/segmentation/cbs.py
</a>
</li>
<li class="file-stats">
<a href="#9951acd8a21196ec3512bffc8d1fb0f94f705d3c">
cnvlib/segmentation/flasso.py
</a>
</li>
<li class="file-stats">
<a href="#9b34e9846c222fbc2867cbaffe1fffd109acc62b">
cnvlib/segmentation/hmm.py
</a>
</li>
<li class="file-stats">
<a href="#0951eeefdf2ea319d076d925c8c0f472cce1366e">
<span class="new-file">
+
cnvlib/segmentation/hmm_learn.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#2dca27b497dd001c9f70173febefc2ff0c9734b7">
cnvlib/vary.py
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#d88b676a1b1b628ac0ee19b3c38428ad6b9e90e6">
debian/patches/controldir
</a>
</li>
<li class="file-stats">
<a href="#a939a4d2dba552129645e87509d008a60796805c">
debian/patches/no-py-ext
</a>
</li>
<li class="file-stats">
<a href="#e4c19aed51618bf0c7ebd03189c67e422f84d4eb">
debian/patches/spelling
</a>
</li>
<li class="file-stats">
<a href="#4455ea4c28397fb0744fe9965b258e3be7c5bf78">
devtools/conda-recipe/meta.yaml
</a>
</li>
<li class="file-stats">
<a href="#1bbcd8980c541f52998ccf56da078edd2ca6a2d0">
doc/index.rst
</a>
</li>
<li class="file-stats">
<a href="#432eccbf403c433ef4c5827f07985f42e5e84726">
doc/nonhybrid.rst
</a>
</li>
<li class="file-stats">
<a href="#9de64de0c6a31e3d551cbbbab0b84ae8d4b2a60d">
doc/pipeline.rst
</a>
</li>
<li class="file-stats">
<a href="#8ffde13df31f212345642ccfa4755f3bd99e7e61">
docker/Dockerfile
</a>
</li>
<li class="file-stats">
<a href="#9fa936d3ed63d2a4fe12751cc15f211fdcc8a505">
scripts/cnv_expression_correlate.py
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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