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<h3>
Shayan Doust pushed to branch master
at <a href="https://salsa.debian.org/med-team/fast">Debian Med / fast</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/fast/commit/2c3406d877d048085d792e92ba6524129b63ee9a">2c3406d8</a></strong>
<div>
<span>by Shayan Doust</span>
<i>at 2019-08-30T19:34:27Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Attempt to doc as assets for testing and examples
Advise for a better location than /usr/share/doc/FAST
</pre>
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<h4>4 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#c28f7a0cc843334e96c6c0bb9b12857ca853a524">
debian/patches/fast_opencl_header_dir_move.patch
</a>
</li>
<li class="file-stats">
<a href="#2b6eb02786a3886a1f479c4a56f937032d255bb6">
<span class="new-file">
+
debian/patches/modify_assets_location.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#e4a9b5062289a8068346ba4ead097cfb8e7131c2">
debian/patches/modify_libs_and_output.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
</ul>
<h4>Changes:</h4>
<li id="c28f7a0cc843334e96c6c0bb9b12857ca853a524">
<a href="https://salsa.debian.org/med-team/fast/commit/2c3406d877d048085d792e92ba6524129b63ee9a#c28f7a0cc843334e96c6c0bb9b12857ca853a524"><strong>debian/patches/fast_opencl_header_dir_move.patch</strong></a>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="6" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,7 +6,7 @@ Last-Update: 2019-08-19</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"></span>
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<td class="diff-line-num old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff">Index: fast/source/CL/OpenCL.hpp</span>
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<td class="diff-line-num old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- fast.orig/source/CL/OpenCL.hpp 2019-08-<span class="idiff left right">19 23:55:24.000000000</span> +0100</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- fast.orig/source/CL/OpenCL.hpp 2019-08-<span class="idiff left right">30 20:00:23.966847547</span> +0100</span></span>
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ /dev/null 1970-01-01 00:00:00.000000000 +0000</span></span>
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<td class="diff-line-num old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"><span class="p">@@ -1,13 +0,0 @@</span></span>
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<td class="diff-line-num old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#ifndef OPENCL_HPP_</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -25,7 +25,7 @@ Index: fast/source/CL/OpenCL.hpp</td>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="diff"><span class="gh" style="color: #999;">Index: fast/source/FAST/OpenCL.hpp</span></span>
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<td class="diff-line-num old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<td class="diff-line-num new_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- /dev/null 1970-01-01 00:00:00.000000000 +0000</span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ fast/source/FAST/OpenCL.hpp 2019-08-<span class="idiff left right">19 23:55:24.000000000</span> +0100</span></span>
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<td class="diff-line-num new old_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ fast/source/FAST/OpenCL.hpp 2019-08-<span class="idiff left right">30 20:00:23.962847562</span> +0100</span></span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="diff"><span class="p">@@ -0,0 +1,13 @@</span></span>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#ifndef OPENCL_HPP_</span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#define OPENCL_HPP_</span></span>
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<li id="2b6eb02786a3886a1f479c4a56f937032d255bb6">
<a href="https://salsa.debian.org/med-team/fast/commit/2c3406d877d048085d792e92ba6524129b63ee9a#2b6eb02786a3886a1f479c4a56f937032d255bb6"><strong>debian/patches/modify_assets_location.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="gh" style="color: #999;">Index: fast/source/FAST/Config.cpp</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- fast.orig/source/FAST/Config.cpp 2019-08-30 18:00:33.000000000 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ fast/source/FAST/Config.cpp 2019-08-30 20:08:05.737080879 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"><span class="p">@@ -78,7 +78,7 @@</span></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="diff"> mTestDataPath = getPath() + "../data/";</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="diff"> mKernelSourcePath = getPath() + "../source/FAST/";</span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"> mKernelBinaryPath = getPath() + "kernel_binaries/";</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- mDocumentationPath = getPath() + "../doc/";</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ mDocumentationPath = getPath() + "../share/doc/FAST/assets";</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> mPipelinePath = getPath() + "../pipelines/";</span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> #ifdef WIN32</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> mLibraryPath = getPath() + "/bin/";</span></pre>
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<li id="e4a9b5062289a8068346ba4ead097cfb8e7131c2">
<a href="https://salsa.debian.org/med-team/fast/commit/2c3406d877d048085d792e92ba6524129b63ee9a#e4a9b5062289a8068346ba4ead097cfb8e7131c2"><strong>debian/patches/modify_libs_and_output.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,8 +5,8 @@ Author: Shayan Doust <hello@shayandoust.me></td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff">Index: fast/CMakeLists.txt</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- fast.orig/CMakeLists.txt 2019-08-<span class="idiff left right">21 04:18:49.220804478</span> +0100</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ fast/CMakeLists.txt 2019-08-<span class="idiff left right">21 04:19:26.69711106</span>3 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- fast.orig/CMakeLists.txt 2019-08-<span class="idiff left right">30 20:05:17.209725641</span> +0100</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ fast/CMakeLists.txt 2019-08-<span class="idiff left right">30 20:05:54.75358200</span>3 +0100</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"><span class="p">@@ -34,7 +34,7 @@</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"> option(FAST_MODULE_WholeSlideImaging "Build whole slide imaging module" OFF)</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"> option(FAST_MODULE_Clarius "Build clarius ultrasound module" OFF)</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -56,12 +56,15 @@ Index: fast/CMakeLists.txt</td>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="diff"> ## Build test executable</span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="diff"> if(FAST_BUILD_TESTS)</span>
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="diff"> add_executable(testFAST ${FAST_TEST_SOURCE_FILES} source/FAST/Algorithms/CoherentPointDrift/Rigid.cpp source/FAST/Algorithms/CoherentPointDrift/Rigid.hpp source/FAST/Algorithms/CoherentPointDrift/Affine.cpp source/FAST/Algorithms/CoherentPointDrift/Affine.hpp)</span>
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<pre style="margin: 0;">-<span id="LC59" class="line" lang="diff"><span class="p">@@ -243,5 +264,8 @@</span></span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="diff"><span class="p">@@ -242,6 +263,11 @@</span></span>
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<pre style="margin: 0;">+<span id="LC60" class="line" lang="diff"> # dlls automatically to the bin folder. </span>
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60
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61
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="diff"> include(cmake/FASTCustomCommands.cmake)</span>
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61
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="diff"> endif(NOT FAST_BUILD_QT5 AND WIN32)</span>
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62
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<pre style="margin: 0;">-<span id="LC62" class="line" lang="diff"> </span>
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63
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+execute_process(COMMAND mkdir -p share/doc/FAST/assets)</span></span>
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64
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+execute_process(COMMAND cp -r ../doc/fonts share/doc/FAST/assets)</span></span>
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65
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+execute_process(COMMAND cp -r ../doc/images share/doc/FAST/assets)</span></span>
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63
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<pre style="margin: 0;"> <span id="LC66" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+install(TARGETS FAST-STATIC DESTINATION .)</span></span>
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67
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<pre style="margin: 0;"> <span id="LC67" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+install(TARGETS FAST DESTINATION .)</span></span>
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<pre style="margin: 0;">-<span id="LC65" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;"><span class="idiff left right">+</span></span></span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="diff"><span class="idiff left right"> </span></span>
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66
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<pre style="margin: 0;"> <span id="LC69" class="line" lang="diff"> include(cmake/ModulePython.cmake)</span>
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67
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="diff"> include(cmake/InstallFAST.cmake)</span></pre>
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1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">modify_assets_location.patch</span>
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1
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2
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<pre style="margin: 0;"> <span id="LC2" class="line" lang="plaintext">opencl_header.patch</span>
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2
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3
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<pre style="margin: 0;"> <span id="LC3" class="line" lang="plaintext">fix_source_openigtlink.patch</span>
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3
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4
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<pre style="margin: 0;"> <span id="LC4" class="line" lang="plaintext">prevent_cmake_downloading.patch</span>
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