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<h3>
Aaron M. Ucko pushed to branch master
at <a href="https://salsa.debian.org/med-team/ncbi-blastplus">Debian Med / ncbi-blastplus</a>
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<h4>
Commits:
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<strong><a href="https://salsa.debian.org/med-team/ncbi-blastplus/commit/bf626a6452c61561398d5f5125b36aca24c628a1">bf626a64</a></strong>
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<span>by Aaron M. Ucko</span>
<i>at 2019-09-02T00:52:30Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">ncbi-blast+ 2.8.1-2: Convert Python script via 2to3 (#937121).
Convert windowmasker_2.2.22_adapter to Python 3 via 2to3;
update (build-)dependencies accordingly. (Closes: #937121.)
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<h4>3 changed files:</h4>
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<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
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<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
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<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
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<h4>Changes:</h4>
<li id="9c96da0e9f91d7d8937b69b524702c106258f0d1">
<a href="https://salsa.debian.org/med-team/ncbi-blastplus/commit/bf626a6452c61561398d5f5125b36aca24c628a1#9c96da0e9f91d7d8937b69b524702c106258f0d1"><strong>debian/changelog</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">ncbi-blast+ (2.8.1-2) unstable; urgency=medium</span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext"> * Convert windowmasker_2.2.22_adapter to Python 3 via 2to3;</span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> update (build-)dependencies accordingly. (Closes: #937121.)</span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> -- Aaron M. Ucko <ucko@debian.org> Sun, 01 Sep 2019 20:50:43 -0400</span>
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">ncbi-blast+ (2.8.1-1) unstable; urgency=medium</span>
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> * New upstream release.</span>
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<li id="58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
<a href="https://salsa.debian.org/med-team/ncbi-blastplus/commit/bf626a6452c61561398d5f5125b36aca24c628a1#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2"><strong>debian/control</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,7 +6,8 @@ Uploaders: Olivier Sallou <osallou@debian.org>,</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">Section: science</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">Priority: optional</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">Build-Depends: debhelper (>= 11~)</span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">Build-Depends-Arch: autotools-dev,</span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext">Build-Depends-Arch: 2to3,</span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> autotools-dev,</span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="plaintext"> libboost-test-dev,</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext"> libbz2-dev,</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext"> libc-dev-bin,</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -26,7 +27,7 @@ Package: ncbi-blast+</td>
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<pre style="margin: 0;"> <span id="LC27" class="line" lang="plaintext">Architecture: any</span>
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<pre style="margin: 0;"> <span id="LC28" class="line" lang="plaintext">Multi-Arch: foreign</span>
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<pre style="margin: 0;"> <span id="LC29" class="line" lang="plaintext">Depends: ncbi-data,</span>
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29
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> python,</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> python<span class="idiff left right">3</span>,</span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="plaintext"> ${misc:Depends},</span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext"> ${perl:Depends},</span>
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<pre style="margin: 0;"> <span id="LC33" class="line" lang="plaintext"> ${shlibs:Depends}</span>
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<a href="https://salsa.debian.org/med-team/ncbi-blastplus/commit/bf626a6452c61561398d5f5125b36aca24c628a1#8756c63497c8dc39f7773438edf53b220c773f67"><strong>debian/rules</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -81,8 +81,11 @@ override_dh_install-arch:</td>
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81
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="make"> <span class="nb" style="color: #0086b3;">mv</span> <span class="nv" style="color: #008080;">$(instroot)</span>/bin/seedtop <span class="nv" style="color: #008080;">$(instroot)</span>/bin/seedtop+</span>
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82
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<pre style="margin: 0;"> <span id="LC82" class="line" lang="make"> <span class="nb" style="color: #0086b3;">mv</span> <span class="nv" style="color: #008080;">$(instroot)</span>/bin/legacy_blast.pl <span class="nv" style="color: #008080;">$(instroot)</span>/bin/legacy_blast</span>
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83
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<pre style="margin: 0;"> <span id="LC83" class="line" lang="make"> <span class="nb" style="color: #0086b3;">mv</span> <span class="nv" style="color: #008080;">$(instroot)</span>/bin/update_blastdb.pl <span class="nv" style="color: #008080;">$(instroot)</span>/bin/update_blastdb</span>
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84
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="make"> <span class="nb" style="color: #0086b3;">mv</span> <span class="nv" style="color: #008080;">$(instroot)</span>/bin/windowmasker_2.2.22_adapter.py <span class="se" style="color: #d14;">\</span></span>
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85
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<pre style="margin: 0;">-<span id="LC85" class="line" lang="make"> <span class="nv" style="color: #008080;">$(instroot)</span>/bin/windowmasker_2.2.22_adapter</span>
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<td class="diff-line-num new old_line" data-linenumber="86" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<pre style="margin: 0;">+<span id="LC84" class="line" lang="make"> <span class="nb" style="color: #0086b3;">sed</span> <span class="nt" style="color: #000080;">-e</span> <span class="s1" style="color: #d14;">'1s/$$/3/'</span> <span class="nv" style="color: #008080;">$(instroot)</span>/bin/windowmasker_2.2.22_adapter.py <span class="se" style="color: #d14;">\</span></span>
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<pre style="margin: 0;">+<span id="LC85" class="line" lang="make"> <span class="o" style="font-weight: 600;">></span> <span class="nv" style="color: #008080;">$(instroot)</span>/bin/windowmasker_2.2.22_adapter</span>
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86
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<pre style="margin: 0;">+<span id="LC86" class="line" lang="make"> 2to3 <span class="nt" style="color: #000080;">-w</span> <span class="nv" style="color: #008080;">$(instroot)</span>/bin/windowmasker_2.2.22_adapter</span>
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87
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<pre style="margin: 0;">+<span id="LC87" class="line" lang="make"> <span class="nb" style="color: #0086b3;">chmod</span> +x <span class="nv" style="color: #008080;">$(instroot)</span>/bin/windowmasker_2.2.22_adapter</span>
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88
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<pre style="margin: 0;">+<span id="LC88" class="line" lang="make"> <span class="nb" style="color: #0086b3;">rm</span> <span class="nv" style="color: #008080;">$(instroot)</span>/bin/windowmasker_2.2.22_adapter.py</span>
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86
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<pre style="margin: 0;"> <span id="LC89" class="line" lang="make"><span class="c" style="color: #998; font-style: italic;"># Clean up tests, demos, and internal build tools</span></span>
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87
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<pre style="margin: 0;"> <span id="LC90" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">rm</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">-f</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">$(instroot)/bin/*test*</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">$(instroot)/bin/seqdb_demo</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span></span>
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88
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<pre style="margin: 0;"> <span id="LC91" class="line" lang="make"> <span class="err" style="color: #a61717; background-color: #e3d2d2;">$(instroot)/bin/datatool</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">$(instroot)/bin/run_with_lock</span> <span class="err" style="color: #a61717; background-color: #e3d2d2;">\</span></span>
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