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<h3>
Michael R. Crusoe pushed to branch master
at <a href="https://salsa.debian.org/med-team/libvcflib">Debian Med / libvcflib</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/libvcflib/commit/18f9a56680d84676eadf8905cf2bd95b76fc9841">18f9a566</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-09-04T00:51:02Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 1.0.0+dfsg</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libvcflib/commit/67089301ec396814188a188c605108006502dbb5">67089301</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-09-04T00:51:22Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/1.0.0+dfsg'
Update to upstream version '1.0.0+dfsg'
with Debian dir 04b8561a5a8b5373f5ac59d18b79f06ef247bd45</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libvcflib/commit/ec7b9c68381ec524e72ed527ffe7bd45a7d3128f">ec7b9c68</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-09-04T02:48:06Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libvcflib/commit/acb1ec1d6c5f927a5204b5085c70aecd7a4b5e2b">acb1ec1d</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-09-04T03:05:29Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">add autopkgtests courtesy upstream
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libvcflib/commit/38b9dd6c2f723bd4880c22a40ece7c6b0023a2b7">38b9dd6c</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-09-04T03:10:20Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">override the version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libvcflib/commit/13ed97d061c99421d7ce86e80ea7b26f9de6e82e">13ed97d0</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-09-04T03:15:18Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">reference upstream libraries in our hand-written pkg config
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/libvcflib/commit/2c4db2773d3272b4c128604aa1c1ba0b8dd74564">2c4db277</a></strong>
<div>
<span>by Michael R. Crusoe</span>
<i>at 2019-09-04T03:49:42Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">improve hardening
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#836efb6e25a091dcb4ff8e1dbb2f0be6a5cbf14c">
Makefile
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#2145284f631e023887e138b27ea804ba59a4541b">
debian/include/IntervalTree.h
</a>
</li>
<li class="file-stats">
<a href="#57d9ff69ed8009018744730cac30075db295a453">
debian/libvcflib-tools.install
</a>
</li>
<li class="file-stats">
<a href="#0ba8c24deb72a65ea9a4a10047438d627bdd1496">
<span class="new-file">
+
debian/patches/dont_link_pthread
</span>
</a>
</li>
<li class="file-stats">
<a href="#fe47d4b238ced8cd1145f79eb4aa95d5783dc101">
debian/patches/filevercmp.h.patch
</a>
</li>
<li class="file-stats">
<a href="#7171e6ef5cef9a033b5bb67e0a1a27959a7c987f">
debian/patches/fix_installation.patch
</a>
</li>
<li class="file-stats">
<a href="#3db93006c999daaa652555ee5b093f17a4858e39">
<span class="new-file">
+
debian/patches/hardening-flags
</span>
</a>
</li>
<li class="file-stats">
<a href="#8390ecfcfabfca8e83a5a8d931f22f0bf446f807">
debian/patches/intervaltree.patch
</a>
</li>
<li class="file-stats">
<a href="#085e8a46ac6788f0358770a5583b2511822b5d16">
debian/patches/keep_R_files.patch
</a>
</li>
<li class="file-stats">
<a href="#527fffe3980c2be33244c74ec2cfc7a6a95e92cf">
<span class="new-file">
+
debian/patches/override_version
</span>
</a>
</li>
<li class="file-stats">
<a href="#9282af4050bfc4ccfdc58b03281755547772cffa">
debian/patches/pkg-config.patch
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#5dd3e65e8bf2a49f7e8db4bc4087719b91091f7c">
debian/patches/shared_lib.patch
</a>
</li>
<li class="file-stats">
<a href="#f73c14546ec70508e3c3d3efcb88f0ebad9f1f73">
debian/patches/use_debian_packaged_fastahack.patch
</a>
</li>
<li class="file-stats">
<a href="#e847dec435c3030822de2161ab48d6c5b17c318d">
debian/patches/use_debian_packaged_libssw.patch
</a>
</li>
<li class="file-stats">
<a href="#947e072c91575647e20c8e6e1b441e13fbe6fe5b">
debian/patches/use_debian_packaged_smithwaterman.patch
</a>
</li>
<li class="file-stats">
<a href="#2026da8936a56f81ff5288c425be00e819243775">
debian/patches/use_debian_packaged_tabixpp.patch
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#83223a554d33ba7e1888274ff8ac43adb8147ba0">
<span class="new-file">
+
debian/tests/control
</span>
</a>
</li>
<li class="file-stats">
<a href="#a3605ce2e71fe99d64663ab3128baf72f749037e">
scripts/vcf2bed.py
</a>
</li>
<li class="file-stats">
<a href="#a6b7f423610de5f7b91ca6f058e43ed89c5fe2c5">
scripts/vcf2sqlite.py
</a>
</li>
<li class="file-stats">
<a href="#2f6457546dd9b17dda7980dfec7f910ad32c6fa5">
scripts/vcfclearid
</a>
</li>
<li class="file-stats">
<a href="#427a79153566b7170203310fb39d886b8affc023">
scripts/vcfclearinfo
</a>
</li>
<li class="file-stats">
<a href="#698eb6a3f16b693cec023ddbdc3df2295eded77a">
scripts/vcffirstheader
</a>
</li>
<li class="file-stats">
<a href="#13db7414b0966cb9ed1bb9968327fd5e1af9863c">
scripts/vcfnulldotslashdot
</a>
</li>
<li class="file-stats">
<a href="#064f6f30b2ef573145e550cf01828d6462d0f335">
src/BedReader.h
</a>
</li>
<li class="file-stats">
<a href="#1e0994915779ecf5b7b7fc9ddefc94353c73476f">
src/Variant.cpp
</a>
</li>
<li class="file-stats">
<a href="#652b96bba65afc5f190351f4ffa54108321ad32e">
src/Variant.h
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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