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<h3>
Andreas Tille pushed to branch master
at <a href="https://salsa.debian.org/med-team/ragout">Debian Med / ragout</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/ragout/commit/891eaa4e53474073b4440899f47faa465385f79c">891eaa4e</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-09-05T08:06:47Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ragout/commit/bf7e8e409d47afbbc700da2374671dab33a665f6">bf7e8e40</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-09-05T08:06:49Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.2</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ragout/commit/ea7b66ef1d1c0e3717d0b202f9f03a5607c325b1">ea7b66ef</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-09-05T08:08:13Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Update upstream source from tag 'upstream/2.2'
Update to upstream version '2.2'
with Debian dir da252f8f2410e700f10baa970738fbaafae39d06</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ragout/commit/62442c99c7c35b5f4e21b4c3a323dff0e4562b17">62442c99</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-09-05T08:08:13Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">debhelper-compat 12
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ragout/commit/2790d9e38ff0e19be91c69b5353ef13e1580489e">2790d9e3</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-09-05T08:08:20Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Standards-Version: 4.4.0
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ragout/commit/24c76362f29fb8cb1ad31394d4bbc955fc5897b6">24c76362</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-09-05T08:19:16Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Patches applied upstream
</pre>
</li>
<li>
<strong><a href="https://salsa.debian.org/med-team/ragout/commit/7fd807c91bdd0b3ec5d28ef52aeb17528821da60">7fd807c9</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-09-05T09:23:47Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Use 2to3 to port to Python3
</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#571a97527779cbb061b99f890157085f6acf03f6">
bin/ragout
</a>
</li>
<li class="file-stats">
<a href="#9c96da0e9f91d7d8937b69b524702c106258f0d1">
debian/changelog
</a>
</li>
<li class="file-stats">
<a href="#78fd675df1cf8c2d4c62ae1a9a912d15c8c50ba4">
<span class="deleted-file">
−
debian/compat
</span>
</a>
</li>
<li class="file-stats">
<a href="#58ef006ab62b83b4bec5d81fe5b32c3b4c2d1cc2">
debian/control
</a>
</li>
<li class="file-stats">
<a href="#555c85016bd79aa8bbb523506af81b69d9c69534">
<span class="new-file">
+
debian/patches/2to3.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#cb9ce3db83bd991ab16e3244af73fdbb05cadc6b">
<span class="deleted-file">
−
debian/patches/d49a5c46f73c1a4a2bfcbf5bbe41b9d2dab5f5f0.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#c31b425c1dd1fb15d86e40bfd7f75b939ec86628">
<span class="deleted-file">
−
debian/patches/e3a06ef1256cf132903bbf19c9d4e11ea846e6df.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#8194198ebc7d60a0d46fd726e66ad61bc88dd5b6">
<span class="deleted-file">
−
debian/patches/f4d4e2223a337abdbc5873fd6560e1494e55342d.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#adfbeabbb44ac6c611fbd7b40716d10fe8743309">
<span class="deleted-file">
−
debian/patches/install_newick.patch
</span>
</a>
</li>
<li class="file-stats">
<a href="#bc34014ab4b9a49dd7a27bdd8d352912607c3a96">
debian/patches/series
</a>
</li>
<li class="file-stats">
<a href="#8756c63497c8dc39f7773438edf53b220c773f67">
debian/rules
</a>
</li>
<li class="file-stats">
<a href="#adf144f57098687d6b958a6143cce31566e93b81">
docs/INSTALL.md
</a>
</li>
<li class="file-stats">
<a href="#ca985c40ed4a8b4213d6d3029f73f8173c54555e">
ragout/__version__.py
</a>
</li>
<li class="file-stats">
<a href="#b6b8b5414daa7b8069a253dccaa201d0508fab86">
ragout/assembly_graph/assembly_refine.py
</a>
</li>
<li class="file-stats">
<a href="#22a1ef7d3a2e5fc83e3dd8a3713222ca5f8aa197">
ragout/breakpoint_graph/breakpoint_graph.py
</a>
</li>
<li class="file-stats">
<a href="#517cc8e358565ad7984801d76e285fb78ca64406">
ragout/breakpoint_graph/chimera_detector.py
</a>
</li>
<li class="file-stats">
<a href="#b2e6ad04c77950174dff7749daa964b5dd4ea48d">
ragout/breakpoint_graph/inferer.py
</a>
</li>
<li class="file-stats">
<a href="#566a22accf1dca3a2d5713f52610fb883209c33d">
ragout/breakpoint_graph/repeat_resolver.py
</a>
</li>
<li class="file-stats">
<a href="#4c5cc0da039a94acca37cb5abb53c889dc44e626">
ragout/maf2synteny/cpp_impl/breakpoint_graph.cpp
</a>
</li>
<li class="file-stats">
<a href="#8474d6ed7ec3a28e4f639eb6f2e62b336925df19">
ragout/maf2synteny/cpp_impl/maf_tools.cpp
</a>
</li>
<li class="file-stats">
<a href="#f6e44abfaf04d95da667a0196ef05895ee11d429">
ragout/maf2synteny/cpp_impl/maf_tools.h
</a>
</li>
<li class="file-stats">
<a href="#4201e350c57afadb49cc65fa91957e279716fc33">
ragout/maf2synteny/cpp_impl/main.cpp
</a>
</li>
<li class="file-stats">
<a href="#2621712b4957b0fca7682e9124678aac647fca7a">
lib/newick/AUTHORS
→
ragout/newick/AUTHORS
</a>
</li>
<li class="file-stats">
<a href="#f2cce9164a1d1a67174b6ccdb2144ca112c07b52">
lib/newick/COPYING
→
ragout/newick/COPYING
</a>
</li>
<li class="file-stats">
<a href="#0962236166074c12abc702b2547817c732ca8125">
lib/newick/__init__.py
→
ragout/newick/__init__.py
</a>
</li>
<li class="file-stats">
<a href="#16007c1586e67a2d7827c605c39e9b25ebc17633">
lib/newick/lexer.py
→
ragout/newick/lexer.py
</a>
</li>
<li class="file-stats">
<a href="#75366e2ad1b0b07c96985a2715665b90b030ad80">
lib/newick/lexertest.py
→
ragout/newick/lexertest.py
</a>
</li>
<li class="file-stats">
<a href="#d8b0debe105fe22902c460da68776a76fb6aa9ca">
lib/newick/parser.py
→
ragout/newick/parser.py
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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