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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/ragout">Debian Med / ragout</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/ragout/commit/bf7e8e409d47afbbc700da2374671dab33a665f6">bf7e8e40</a></strong>
<div>
<span>by Andreas Tille</span>
<i>at 2019-09-05T08:06:49Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.2</pre>
</li>
</ul>
<h4>30 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#dea01dd89a3b602828e630677fde5d77c06441c8">
.travis.yml
</a>
</li>
<li class="file-stats">
<a href="#8ec9a00bfd09b3190ac6b22251dbb1aa95a0579d">
README.md
</a>
</li>
<li class="file-stats">
<a href="#571a97527779cbb061b99f890157085f6acf03f6">
bin/ragout
</a>
</li>
<li class="file-stats">
<a href="#adf144f57098687d6b958a6143cce31566e93b81">
docs/INSTALL.md
</a>
</li>
<li class="file-stats">
<a href="#ca985c40ed4a8b4213d6d3029f73f8173c54555e">
ragout/__version__.py
</a>
</li>
<li class="file-stats">
<a href="#b6b8b5414daa7b8069a253dccaa201d0508fab86">
ragout/assembly_graph/assembly_refine.py
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</li>
<li class="file-stats">
<a href="#22a1ef7d3a2e5fc83e3dd8a3713222ca5f8aa197">
ragout/breakpoint_graph/breakpoint_graph.py
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<li class="file-stats">
<a href="#517cc8e358565ad7984801d76e285fb78ca64406">
ragout/breakpoint_graph/chimera_detector.py
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<li class="file-stats">
<a href="#b2e6ad04c77950174dff7749daa964b5dd4ea48d">
ragout/breakpoint_graph/inferer.py
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</li>
<li class="file-stats">
<a href="#566a22accf1dca3a2d5713f52610fb883209c33d">
ragout/breakpoint_graph/repeat_resolver.py
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<li class="file-stats">
<a href="#4c5cc0da039a94acca37cb5abb53c889dc44e626">
ragout/maf2synteny/cpp_impl/breakpoint_graph.cpp
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<li class="file-stats">
<a href="#8474d6ed7ec3a28e4f639eb6f2e62b336925df19">
ragout/maf2synteny/cpp_impl/maf_tools.cpp
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<li class="file-stats">
<a href="#f6e44abfaf04d95da667a0196ef05895ee11d429">
ragout/maf2synteny/cpp_impl/maf_tools.h
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<li class="file-stats">
<a href="#4201e350c57afadb49cc65fa91957e279716fc33">
ragout/maf2synteny/cpp_impl/main.cpp
</a>
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<li class="file-stats">
<a href="#2621712b4957b0fca7682e9124678aac647fca7a">
lib/newick/AUTHORS
→
ragout/newick/AUTHORS
</a>
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<li class="file-stats">
<a href="#f2cce9164a1d1a67174b6ccdb2144ca112c07b52">
lib/newick/COPYING
→
ragout/newick/COPYING
</a>
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<li class="file-stats">
<a href="#0962236166074c12abc702b2547817c732ca8125">
lib/newick/__init__.py
→
ragout/newick/__init__.py
</a>
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<li class="file-stats">
<a href="#16007c1586e67a2d7827c605c39e9b25ebc17633">
lib/newick/lexer.py
→
ragout/newick/lexer.py
</a>
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<li class="file-stats">
<a href="#75366e2ad1b0b07c96985a2715665b90b030ad80">
lib/newick/lexertest.py
→
ragout/newick/lexertest.py
</a>
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<li class="file-stats">
<a href="#d8b0debe105fe22902c460da68776a76fb6aa9ca">
lib/newick/parser.py
→
ragout/newick/parser.py
</a>
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<li class="file-stats">
<a href="#e5e7290f35103f7af92405c945ff8cf1d0998a35">
lib/newick/parsertest.py
→
ragout/newick/parsertest.py
</a>
</li>
<li class="file-stats">
<a href="#76954acb33d6c3f754ec3c0f3ed41a7b46a1f6d4">
lib/newick/tokens.py
→
ragout/newick/tokens.py
</a>
</li>
<li class="file-stats">
<a href="#bba476d0deb25893e8786c267042e8306bba1511">
lib/newick/tree.py
→
ragout/newick/tree.py
</a>
</li>
<li class="file-stats">
<a href="#b415bd3b8446ea7b3157d05ceb7b5ceb3b652427">
lib/newick/treetest.py
→
ragout/newick/treetest.py
</a>
</li>
<li class="file-stats">
<a href="#56c8e8437d7cbcc4f1b56ff842d0bcca572432ee">
ragout/parsers/phylogeny_parser.py
</a>
</li>
<li class="file-stats">
<a href="#e941748f07d64a63036bf307ec3642834bf1e8dd">
ragout/phylogeny/inferer.py
</a>
</li>
<li class="file-stats">
<a href="#33d38ef908aae316394296401f59a29733569c83">
ragout/scaffolder/merge_iters.py
</a>
</li>
<li class="file-stats">
<a href="#19359a61ae2446b51b549167b014da2fcf265768">
<span class="new-file">
+
requirements.txt
</span>
</a>
</li>
<li class="file-stats">
<a href="#7d0add66f0e12171c24f6a69d61ecb51901c0570">
<span class="deleted-file">
−
scripts/blocks-dotplot.py
</span>
</a>
</li>
<li class="file-stats">
<a href="#3ed4347939f8b380b66e369d13f79dfc8447ad0a">
<span class="deleted-file">
−
scripts/chromosome-report.py
</span>
</a>
</li>
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<h5>The diff was not included because it is too large.</h5>
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