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<h3>
Sascha Steinbiss pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/ariba">Debian Med / ariba</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/ariba/commit/5aef83534cfbb62b44e7dc2a73ca586dfe926d43">5aef8353</a></strong>
<div>
<span>by Sascha Steinbiss</span>
<i>at 2019-09-09T19:05:20Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 2.14.3+ds</pre>
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<h4>30 changed files:</h4>
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<li class="file-stats">
<a href="#ab09011fa121d0a2bb9fa4ca76094f2482b902b7">
CHANGELOG.md
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<li class="file-stats">
<a href="#6651ddff6eb82c840ced7c1dddee15c6e1913dd4">
Dockerfile
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<li class="file-stats">
<a href="#26b854c1e587b7ea31b78a669fba9b66adbaefa8">
ariba/ref_preparer.py
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<li class="file-stats">
<a href="#7a693623f7e7dfe7ab306f7bdacf4973919816c0">
ariba/reference_data.py
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<li class="file-stats">
<a href="#c5ffa08f04d46472e2c42797aeac5116772620fc">
ariba/tasks/prepareref.py
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<li class="file-stats">
<a href="#92a074faf59976e20054d643d2fb5913d8328ed7">
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ariba/tests/data/ref_preparer_test_run.in.4.fa
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ariba/tests/data/ref_preparer_test_run.in.4.tsv
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<a href="#160f49917a4257ba4816c36bc571b352b9922d9a">
ariba/tests/data/ref_preparer_test_run.out/01.filter.check_metadata.log
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<a href="#9e615951f8d156f3fe4be6ea1ee7746d203bb0eb">
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ariba/tests/data/ref_preparer_test_run.out/01.filter.check_noncoding.log
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<a href="#4636a929347041d7ffc5ce818406660a3251db15">
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ariba/tests/data/ref_preparer_test_run_all_noncoding.out/01.filter.check_noncoding.log
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ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.info.txt
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ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.rename_info
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ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/00.version_info.txt
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ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_genes.log
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<a href="#667d0eaeecba34b620abbce12f8a8fa6251a3b46">
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ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.log
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ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_metadata.tsv
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ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/01.filter.check_noncoding.log
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ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.all.fa
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ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.pickle
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ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.clusters.tsv
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ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.fa
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ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.gene.varonly.fa
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<a href="#792485b5c84cdba1e9fd77bedd0e3a676d3b2a46">
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ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.fa
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ariba/tests/data/ref_preparer_test_run_noncoding_checks.out/02.cdhit.noncoding.varonly.fa
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<a href="#2c5de60e11977cdb0f3e51de04d22c0ffc009afa">
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ariba/tests/data/refdata_query_prepareref/01.filter.check_noncoding.log
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<li class="file-stats">
<a href="#ef4c944fc5e233c1ab567d161cf239f55940db54">
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ariba/tests/data/reference_data_remove_bad_noncoding.in.fa
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<a href="#865cbc0f133d8f7a3d713ac2a82782215d9e47d4">
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ariba/tests/data/reference_data_remove_bad_noncoding.in.tsv
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ariba/tests/data/reference_data_test_remove_bad_noncoding.log
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<li class="file-stats">
<a href="#cd7e783c15f77069e6a34b2a2492845ee27fac8d">
ariba/tests/ref_preparer_test.py
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<li class="file-stats">
<a href="#cf918ad4e71d8cc4471015d3c06194bdfe3f657d">
ariba/tests/reference_data_test.py
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<h5>The diff was not included because it is too large.</h5>
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