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<h3>
Dylan Aïssi pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/beagle">Debian Med / beagle</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/beagle/commit/9ea91de8884359f05f558faf0e8795e35f8cd66b">9ea91de8</a></strong>
<div>
<span>by Dylan Aïssi</span>
<i>at 2019-09-09T20:06:42Z</i>
</div>
<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 5.1-190824+dfsg</pre>
</li>
</ul>
<h4>26 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#5deb5056c0326ef2fa7706bf604aee0190919ece">
beagleutil/ChromInterval.java
</a>
</li>
<li class="file-stats">
<a href="#b35797e1b11f8d20e90b3d56030212885a937712">
beagleutil/IntInterval.java
</a>
</li>
<li class="file-stats">
<a href="#f3681b06dae45d0dfe680fe6a7cd8ca5cd04094b">
<span class="new-file">
+
beagleutil/PbwtUpdater.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#16719bc23bce502b2ebc67f8f38b13b159126355">
haplotype/HapPair.java
→
blbutil/DoubleArray.java
</a>
</li>
<li class="file-stats">
<a href="#08657c75a9a9746475e49445932865fc0544632d">
blbutil/FloatArray.java
</a>
</li>
<li class="file-stats">
<a href="#1928aebe75a42243fe3f56cf57a32c12bb414d3e">
blbutil/InputIt.java
</a>
</li>
<li class="file-stats">
<a href="#569d1e1ae30f252e98526e6aa870ed406131b290">
blbutil/Utilities.java
</a>
</li>
<li class="file-stats">
<a href="#923ab2081306a60ce903c2304d7d5d6f3224175c">
bref/Bref3Reader.java
</a>
</li>
<li class="file-stats">
<a href="#8858d04c3e071f8148d52b04a39944b5f4560a7a">
bref/SeqCoder3.java
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<li class="file-stats">
<a href="#373b03ef1c58a3e23feb091695a2467fa61c4063">
<span class="deleted-file">
−
haplotype/BitHapPair.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#2ad3c2f9ba6ca719872022b5f4e5f2741da7808d">
<span class="deleted-file">
−
haplotype/WrappedHapPair.java
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</a>
</li>
<li class="file-stats">
<a href="#d431de7a0c4ce83c756519ac2461da10c7d77d1d">
<span class="new-file">
+
imp/CodedSteps.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#67a867e14e93b445b6c7f4b319e9a70c9961e9a7">
imp/HaplotypeCoder.java
</a>
</li>
<li class="file-stats">
<a href="#923f1b8e82851d3ec572b6c0fe2053ba7176c20c">
imp/ImpData.java
</a>
</li>
<li class="file-stats">
<a href="#3ca7c61e1782c0aafcd8bc57803302b434469b7e">
imp/ImpIbs.java
</a>
</li>
<li class="file-stats">
<a href="#1dac241016f8d99d1172c89fd0ce0b82695d5929">
imp/ImpLSBaum.java
</a>
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<li class="file-stats">
<a href="#315086b42467cd64d67b45236c874d197c068244">
imp/ImpStates.java
</a>
</li>
<li class="file-stats">
<a href="#d158c3582076a802a226c9ef95c7781d71642267">
imp/ImputedVcfWriter.java
</a>
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<li class="file-stats">
<a href="#5d0b9ec9c97b4cb59643ae2a931842687f9062ed">
imp/RefHapHash.java
</a>
</li>
<li class="file-stats">
<a href="#f476aeb05c4d494ef711eb392393ad6a239dfba0">
ints/IntArray.java
</a>
</li>
<li class="file-stats">
<a href="#875541d21afabe96c6223e33df45b58881eef4c6">
ints/IntMap.java
→
ints/IntIntMap.java
</a>
</li>
<li class="file-stats">
<a href="#9e88c891ad4e9b7138b9b0f08e9c5c5fc14225ef">
ints/IntList.java
</a>
</li>
<li class="file-stats">
<a href="#55e0d9b114cb26c78aaa764947aeae1545df02f0">
<span class="deleted-file">
−
ints/IntSet.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#32be07827a2c1ac9abc3a432f21be022a28eb3e6">
<span class="new-file">
+
main/CompHapSegment.java
</span>
</a>
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<li class="file-stats">
<a href="#53285d668c0bd4c415dfe1c56d8877d5eb65c23e">
<span class="deleted-file">
−
main/CurrentData.java
</span>
</a>
</li>
<li class="file-stats">
<a href="#2ad0efaccf66628e1858a4c133e8914e33eb2221">
main/Main.java
</a>
</li>
</ul>
<h5>The diff was not included because it is too large.</h5>
</div>
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