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<h3>
Alexandre Mestiashvili pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/pyscanfcs">Debian Med / pyscanfcs</a>
</h3>
<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/pyscanfcs/commit/d5446425c559acf442a4faf4f11f0fbfde2c0d38">d5446425</a></strong>
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<span>by Alexandre Mestiashvili</span>
<i>at 2019-09-09T06:47:20Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.3.5+ds</pre>
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<h4>6 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#1c497fbb3a46b78edf04cc2a2fa33f67e3ffbe2a">
CHANGELOG
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<li class="file-stats">
<a href="#561b88e19de321ca62c7590bbb350765fb110905">
README.rst
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<li class="file-stats">
<a href="#1ce7a7561b518f4b2fc5dcc91ef54e036685afea">
docs/sec_getting_started.rst
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<li class="file-stats">
<a href="#6f2b07d45fa71ef391f9faf10ecec4ed7e7c6cc9">
pyscanfcs/_version.py
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<li class="file-stats">
<a href="#29fb78cde557e4aa20126097190cce5f450c4e91">
pyscanfcs/gui_wx/main.py
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<li class="file-stats">
<a href="#8e2edce0d507e1297474f25c00cae94258db38d8">
setup.py
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</ul>
<h4>Changes:</h4>
<li id="1c497fbb3a46b78edf04cc2a2fa33f67e3ffbe2a">
<a href="https://salsa.debian.org/med-team/pyscanfcs/commit/d5446425c559acf442a4faf4f11f0fbfde2c0d38#1c497fbb3a46b78edf04cc2a2fa33f67e3ffbe2a"><strong>CHANGELOG</strong></a>
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1
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<pre style="margin: 0;">-<span id="LC1" class="line" lang="plaintext">0.3.2</span>
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2
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<pre style="margin: 0;">-<span id="LC2" class="line" lang="plaintext"> - fix: refactor code for opening .dat files; moved from a Cython</span>
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<td class="diff-line-num old old_line" data-linenumber="3" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
3
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="plaintext"> module to a pure Python module due to errors on big-endian</span>
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4
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="plaintext"> systems (#17)</span>
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5
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<pre style="margin: 0;">-<span id="LC5" class="line" lang="plaintext">0.3.1</span>
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6
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<pre style="margin: 0;">-<span id="LC6" class="line" lang="plaintext"> - fix: console script entry point broken (#16)</span>
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<td class="diff-line-num old old_line" data-linenumber="7" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
7
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC7" class="line" lang="plaintext"> - automate distribution to PyPI</span>
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<td class="diff-line-num old old_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
8
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> - update documentation</span>
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<td class="diff-line-num old old_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
9
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="plaintext">0.3.0</span>
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10
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="plaintext"> - Move from Python 2 to Python 3 (#12)</span>
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<td class="diff-line-num old old_line" data-linenumber="11" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
11
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC11" class="line" lang="plaintext"> - Move to wxPython 4.0.1 (#12)</span>
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<td class="diff-line-num old old_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
12
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<pre style="margin: 0;">-<span id="LC12" class="line" lang="plaintext"> - Move from deprecated pyfits to astropy (#10)</span>
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<td class="diff-line-num old old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
13
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<pre style="margin: 0;">-<span id="LC13" class="line" lang="plaintext"> - Support numpy 1.13</span>
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<td class="diff-line-num old old_line" data-linenumber="14" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
14
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<pre style="margin: 0;">-<span id="LC14" class="line" lang="plaintext"> - Fix two spelling mistakes (#11)</span>
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<td class="diff-line-num old old_line" data-linenumber="15" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
15
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="plaintext"> - Cython code cleanup using flake8</span>
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<td class="diff-line-num old old_line" data-linenumber="16" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
16
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="plaintext"> - Bugfix: trailing photon events were not used (<1% of input data)</span>
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<td class="diff-line-num old old_line" data-linenumber="17" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
17
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<pre style="margin: 0;">-<span id="LC17" class="line" lang="plaintext"> - Remove manual update checker</span>
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<td class="diff-line-num old old_line" data-linenumber="18" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
18
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<pre style="margin: 0;">-<span id="LC18" class="line" lang="plaintext">0.2.3</span>
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<td class="diff-line-num old old_line" data-linenumber="19" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
19
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<pre style="margin: 0;">-<span id="LC19" class="line" lang="plaintext"> - New tool to create artificial .dat files for testing</span>
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<td class="diff-line-num old old_line" data-linenumber="20" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="plaintext"> - A couple of minor bug fixes</span>
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<td class="diff-line-num old old_line" data-linenumber="21" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
21
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<pre style="margin: 0;">-<span id="LC21" class="line" lang="plaintext"> - Exceptions are now handled by wxPython</span>
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<td class="diff-line-num old old_line" data-linenumber="22" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
22
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<pre style="margin: 0;">-<span id="LC22" class="line" lang="plaintext"> - Under the hood:</span>
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<td class="diff-line-num old old_line" data-linenumber="23" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
23
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="plaintext"> - Updated repository structure</span>
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<td class="diff-line-num old old_line" data-linenumber="24" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="plaintext"> - Relative imports</span>
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<td class="diff-line-num old old_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
25
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<pre style="margin: 0;">-<span id="LC25" class="line" lang="plaintext"> - Build machine is now Windows 7</span>
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<td class="diff-line-num old old_line" data-linenumber="26" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
26
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<pre style="margin: 0;">-<span id="LC26" class="line" lang="plaintext">0.2.2</span>
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<td class="diff-line-num old old_line" data-linenumber="27" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
27
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<pre style="margin: 0;">-<span id="LC27" class="line" lang="plaintext"> - Added button 'full time interval'</span>
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<td class="diff-line-num old old_line" data-linenumber="28" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
28
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="plaintext"> - This is the first version that uses the external module `multipletau`</span>
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<td class="diff-line-num old old_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
29
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="plaintext"> - This is the first version that is available at PyPI</span>
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<td class="diff-line-num old old_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
30
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext"> - Added setup files with Cython support</span>
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<td class="diff-line-num old old_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
31
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<pre style="margin: 0;">-<span id="LC31" class="line" lang="plaintext"> - MakeTestDat_FCS.py can be used to create test data</span>
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<td class="diff-line-num old old_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
32
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<pre style="margin: 0;">-<span id="LC32" class="line" lang="plaintext"> - Tested with Mac OSx</span>
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<td class="diff-line-num old old_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
33
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<pre style="margin: 0;">-<span id="LC33" class="line" lang="plaintext">0.2.1</span>
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<td class="diff-line-num old old_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
34
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<pre style="margin: 0;">-<span id="LC34" class="line" lang="plaintext"> - Updated help menu (documentation, wiki, update)</span>
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<td class="diff-line-num old old_line" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
35
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<pre style="margin: 0;">-<span id="LC35" class="line" lang="plaintext"> - Performed some artwork around PyScanFCS</span>
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<td class="diff-line-num old old_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
36
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<pre style="margin: 0;">-<span id="LC36" class="line" lang="plaintext"> - Output of bleaching correction data (#1)</span>
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<td class="diff-line-num old old_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
37
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<pre style="margin: 0;">-<span id="LC37" class="line" lang="plaintext"> - Code cleanup</span>
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<td class="diff-line-num old old_line" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
38
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<pre style="margin: 0;">-<span id="LC38" class="line" lang="plaintext">0.2.0</span>
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<td class="diff-line-num old old_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
39
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="plaintext"> - Code cleanup</span>
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<td class="diff-line-num old old_line" data-linenumber="40" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
40
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<pre style="margin: 0;">-<span id="LC40" class="line" lang="plaintext"> - Considerable speed-up in binning of .dat files</span>
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<td class="diff-line-num old old_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
41
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC41" class="line" lang="plaintext"> - Secured compatibility with PyCorrFit (.csv files)</span>
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<td class="diff-line-num old old_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
42
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<pre style="margin: 0;">-<span id="LC42" class="line" lang="plaintext"> - Fixed small file-naming bug</span>
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<td class="diff-line-num old old_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
43
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC43" class="line" lang="plaintext">0.1.9</span>
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<td class="diff-line-num old old_line" data-linenumber="44" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
44
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<pre style="margin: 0;">-<span id="LC44" class="line" lang="plaintext"> - Code cleanup</span>
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<td class="diff-line-num old old_line" data-linenumber="45" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
45
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC45" class="line" lang="plaintext"> - Moved to Python 2.7</span>
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<td class="diff-line-num old old_line" data-linenumber="46" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
46
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC46" class="line" lang="plaintext">0.1.8</span>
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<td class="diff-line-num old old_line" data-linenumber="47" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
47
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<td class="diff-line-num new_line old" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC47" class="line" lang="plaintext"> - Initital GitHub commit</span></pre>
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<td class="diff-line-num new old_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="1" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
1
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">0.3.5</span>
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<td class="diff-line-num new old_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="2" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
2
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="plaintext"> - maintenance release</span>
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3
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="plaintext">0.3.4</span>
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4
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="plaintext"> - maintenance release</span>
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5
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="plaintext">0.3.3</span>
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6
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<pre style="margin: 0;">+<span id="LC6" class="line" lang="plaintext"> - setup: Windows installers are available again</span>
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7
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<pre style="margin: 0;">+<span id="LC7" class="line" lang="plaintext"> (https://github.com/astropy/astropy/issues/7052)</span>
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<td class="diff-line-num new new_line" data-linenumber="8" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
8
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="plaintext">0.3.2</span>
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<td class="diff-line-num new new_line" data-linenumber="9" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
9
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="plaintext"> - fix: refactor code for opening .dat files; moved from a Cython</span>
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10
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="plaintext"> module to a pure Python module due to errors on big-endian</span>
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11
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="plaintext"> systems (#17)</span>
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<td class="diff-line-num new new_line" data-linenumber="12" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
12
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="plaintext">0.3.1</span>
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<td class="diff-line-num new new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
13
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="plaintext"> - fix: console script entry point broken (#16)</span>
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14
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="plaintext"> - automate distribution to PyPI</span>
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15
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"> - update documentation</span>
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16
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="plaintext">0.3.0</span>
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17
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="plaintext"> - Move from Python 2 to Python 3 (#12)</span>
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18
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="plaintext"> - Move to wxPython 4.0.1 (#12)</span>
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19
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="plaintext"> - Move from deprecated pyfits to astropy (#10)</span>
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20
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="plaintext"> - Support numpy 1.13</span>
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21
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="plaintext"> - Fix two spelling mistakes (#11)</span>
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22
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext"> - Cython code cleanup using flake8</span>
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23
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="plaintext"> - Bugfix: trailing photon events were not used (<1% of input data)</span>
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24
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="plaintext"> - Remove manual update checker</span>
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25
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="plaintext">0.2.3</span>
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26
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="plaintext"> - New tool to create artificial .dat files for testing</span>
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27
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="plaintext"> - A couple of minor bug fixes</span>
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28
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="plaintext"> - Exceptions are now handled by wxPython</span>
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<td class="diff-line-num new new_line" data-linenumber="29" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
29
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="plaintext"> - Under the hood:</span>
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<td class="diff-line-num new new_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
30
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="plaintext"> - Updated repository structure</span>
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<td class="diff-line-num new new_line" data-linenumber="31" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
31
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="plaintext"> - Relative imports</span>
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<td class="diff-line-num new new_line" data-linenumber="32" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
32
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="plaintext"> - Build machine is now Windows 7</span>
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<td class="diff-line-num new new_line" data-linenumber="33" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
33
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext">0.2.2</span>
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<td class="diff-line-num new old_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="34" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
34
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="plaintext"> - Added button 'full time interval'</span>
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<td class="diff-line-num new old_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="35" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
35
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="plaintext"> - This is the first version that uses the external module `multipletau`</span>
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<td class="diff-line-num new old_line" data-linenumber="48" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
36
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="plaintext"> - This is the first version that is available at PyPI</span>
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<td class="diff-line-num new new_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
37
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="plaintext"> - Added setup files with Cython support</span>
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38
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="plaintext"> - MakeTestDat_FCS.py can be used to create test data</span>
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<td class="diff-line-num new new_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="plaintext"> - Tested with Mac OSx</span>
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40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="plaintext">0.2.1</span>
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41
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="plaintext"> - Updated help menu (documentation, wiki, update)</span>
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42
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="plaintext"> - Performed some artwork around PyScanFCS</span>
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43
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<pre style="margin: 0;">+<span id="LC43" class="line" lang="plaintext"> - Output of bleaching correction data (#1)</span>
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44
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<pre style="margin: 0;">+<span id="LC44" class="line" lang="plaintext"> - Code cleanup</span>
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45
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<pre style="margin: 0;">+<span id="LC45" class="line" lang="plaintext">0.2.0</span>
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46
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<pre style="margin: 0;">+<span id="LC46" class="line" lang="plaintext"> - Code cleanup</span>
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47
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<pre style="margin: 0;">+<span id="LC47" class="line" lang="plaintext"> - Considerable speed-up in binning of .dat files</span>
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48
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="plaintext"> - Secured compatibility with PyCorrFit (.csv files)</span>
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49
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<pre style="margin: 0;">+<span id="LC49" class="line" lang="plaintext"> - Fixed small file-naming bug</span>
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50
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<pre style="margin: 0;">+<span id="LC50" class="line" lang="plaintext">0.1.9</span>
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51
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<pre style="margin: 0;">+<span id="LC51" class="line" lang="plaintext"> - Code cleanup</span>
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52
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<pre style="margin: 0;">+<span id="LC52" class="line" lang="plaintext"> - Moved to Python 2.7</span>
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53
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<pre style="margin: 0;">+<span id="LC53" class="line" lang="plaintext">0.1.8</span>
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54
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<pre style="margin: 0;">+<span id="LC54" class="line" lang="plaintext"> - Initital GitHub commit</span></pre>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -12,12 +12,15 @@ fluctuating fluorescence signal from such measurements and applies a multiple-ta</td>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="plaintext">algorithm. The obtained correlation curves can be evaluated using</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="plaintext">`PyCorrFit <https://github.com/FCS-analysis/PyCorrFit>`__.</span>
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="plaintext"></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC16" class="line" lang="plaintext">Getting started</span>
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<pre style="margin: 0;"> <span id="LC17" class="line" lang="plaintext">===============</span>
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="plaintext"></span>
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="plaintext">Installation</span>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="plaintext">------------</span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="plaintext">Installers for PyScanFCS are available at the `release page <https://github.com/FCS-analysis/PyScanFCS/releases>`__.</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="plaintext">Alternatively, install with ``pip install pyscanfcs``.</span>
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<pre style="margin: 0;"> <span id="LC25" class="line" lang="plaintext">Documentation</span>
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<pre style="margin: 0;"> <span id="LC26" class="line" lang="plaintext">-------------</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -27,7 +30,7 @@ functions is available as a `PDF file <https://github.com/FCS-analysis/PyScanFCS</td>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="plaintext">.. |PyScanFCS| image:: https://raw.github.com/FCS-analysis/PyScanFCS/master/doc/Images/PyScanFCS_logo_dark.png</span>
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<pre style="margin: 0;">-<span id="LC30" class="line" lang="plaintext">.. |PyPI Version| image:: http://img.shields.io/pypi/v/PyScanFCS.svg</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="plaintext">.. |PyPI Version| image:: http<span class="idiff left right">s</span>://img.shields.io/pypi/v/PyScanFCS.svg</span>
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<pre style="margin: 0;"> <span id="LC34" class="line" lang="plaintext"> :target: https://pypi.python.org/pypi/pyscanfcs</span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="plaintext">.. |Build Status Win| image:: https://img.shields.io/appveyor/ci/paulmueller/PyScanFCS/master.svg?label=win</span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="plaintext"> :target: https://ci.appveyor.com/project/paulmueller/pyscanfcs</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,7 +5,6 @@ Getting started</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="plaintext">Installation</span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="plaintext">------------</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="plaintext">- Windows installers for PyScanFCS are available at the `release page <https://github.com/FCS-analysis/PyScanFCS/releases>`_.</span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="plaintext"> Note: The installer is currently broken because astropy cannot be frozen, see https://github.com/astropy/astropy/issues/7052.</span>
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9
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="plaintext">- On Debian-based systems, install via ``apt-get install pyscanfcs``.</span>
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10
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<pre style="margin: 0;"> <span id="LC9" class="line" lang="plaintext">- If you have Python 3.6 installed, you may install PyScanFCS via ``pip install pyscanfcs``.</span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="plaintext"> After the installation, type ``pyscanfcs`` in a command shell to start PyScanFCS.</span>
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<a href="https://salsa.debian.org/med-team/pyscanfcs/commit/d5446425c559acf442a4faf4f11f0fbfde2c0d38#6f2b07d45fa71ef391f9faf10ecec4ed7e7c6cc9"><strong>pyscanfcs/_version.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -138,4 +138,4 @@ if True: # pragma: no cover</td>
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="python"> <span class="n" style="color: #333;">save_version</span><span class="p">(</span><span class="n" style="color: #333;">longversion</span><span class="p">,</span> <span class="n" style="color: #333;">versionfile</span><span class="p">)</span></span>
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139
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139
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># PEP 440-conform development version:</span></span>
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141
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<pre style="margin: 0;">-<span id="LC141" class="line" lang="python"> <span class="n" style="color: #333;">version</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">".<span class="idiff left right">dev</span>"</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">longversion</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">split</span><span class="p">(</span><span class="s" style="color: #d14;">"-"</span><span class="p">)[:</span><span class="mi" style="color: #099;">2</span><span class="p">])</span></span></pre>
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<pre style="margin: 0;">+<span id="LC141" class="line" lang="python"> <span class="n" style="color: #333;">version</span> <span class="o" style="font-weight: 600;">=</span> <span class="s" style="color: #d14;">".<span class="idiff left right">post</span>"</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span><span class="n" style="color: #333;">longversion</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">split</span><span class="p">(</span><span class="s" style="color: #d14;">"-"</span><span class="p">)[:</span><span class="mi" style="color: #099;">2</span><span class="p">])</span></span></pre>
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<a href="https://salsa.debian.org/med-team/pyscanfcs/commit/d5446425c559acf442a4faf4f11f0fbfde2c0d38#29fb78cde557e4aa20126097190cce5f450c4e91"><strong>pyscanfcs/gui_wx/main.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -962,7 +962,7 @@ class MyFrame(wx.Frame):</td>
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962
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<pre style="margin: 0;"> <span id="LC962" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Bind</span><span class="p">(</span><span class="n" style="color: #333;">wx</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">EVT_MENU</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">OnMenuDocumentation</span><span class="p">,</span> <span class="n" style="color: #333;">menuDocu</span><span class="p">)</span></span>
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963
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963
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<pre style="margin: 0;"> <span id="LC963" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Bind</span><span class="p">(</span><span class="n" style="color: #333;">wx</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">EVT_MENU</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">OnMenuWiki</span><span class="p">,</span> <span class="n" style="color: #333;">menuWiki</span><span class="p">)</span></span>
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964
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964
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<pre style="margin: 0;"> <span id="LC964" class="line" lang="python"></span>
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965
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<pre style="margin: 0;">-<span id="LC965" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">OnBinning_Prebin</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">e<span class="idiff left right">vent</span></span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC965" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">OnBinning_Prebin</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">):</span></span>
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966
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<pre style="margin: 0;"> <span id="LC966" class="line" lang="python"> <span class="s" style="color: #d14;">""" Do prebinngin using *Bin_Photon_Events()* """</span></span>
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<pre style="margin: 0;"> <span id="LC967" class="line" lang="python"> <span class="n" style="color: #333;">n_events</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">BoxPrebin</span><span class="p">[</span><span class="mi" style="color: #099;">2</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">GetValue</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC968" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">BoxPrebin</span><span class="p">[</span><span class="mi" style="color: #099;">6</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">GetValue</span><span class="p">()</span> <span class="o" style="font-weight: 600;">==</span> <span class="bp" style="color: #999;">False</span><span class="p">:</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -987,7 +987,7 @@ class MyFrame(wx.Frame):</td>
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<pre style="margin: 0;"> <span id="LC987" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Update</span><span class="p">()</span></span>
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988
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<pre style="margin: 0;"> <span id="LC988" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">PlotImage</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC989" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC990" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">OnBinning_Total</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">e<span class="idiff left right">vent</span></span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC990" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">OnBinning_Total</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">None</span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC991" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">BoxPrebin</span><span class="p">[</span><span class="mi" style="color: #099;">6</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">GetValue</span><span class="p">()</span> <span class="o" style="font-weight: 600;">==</span> <span class="bp" style="color: #999;">False</span><span class="p">:</span></span>
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<pre style="margin: 0;"> <span id="LC992" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># from µs to system clock ticks</span></span>
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<pre style="margin: 0;"> <span id="LC993" class="line" lang="python"> <span class="n" style="color: #333;">t_bin</span> <span class="o" style="font-weight: 600;">=</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">BoxPrebin</span><span class="p">[</span><span class="mi" style="color: #099;">4</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">GetValue</span><span class="p">()</span> <span class="o" style="font-weight: 600;">*</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">system_clock</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1010,7 +1010,7 @@ class MyFrame(wx.Frame):</td>
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<pre style="margin: 0;"> <span id="LC1010" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Then Plot the data somehow</span></span>
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<pre style="margin: 0;"> <span id="LC1011" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">PlotImage</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC1012" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC1013" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">OnFindLineScanTime</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">e<span class="idiff left right">vent</span></span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC1013" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">OnFindLineScanTime</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;"><span class="idiff left">=</span></span><span class="bp" style="color: #999;"><span class="idiff right">None</span></span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC1014" class="line" lang="python"> <span class="s" style="color: #d14;">"""</span></span>
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1015
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<pre style="margin: 0;"> <span id="LC1015" class="line" lang="python"><span class="s" style="color: #d14;"> Find the time that the confocal microscope uses to capture a line</span></span>
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<pre style="margin: 0;"> <span id="LC1016" class="line" lang="python"><span class="s" style="color: #d14;"> of data. This is done via FFT.</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1091,7 +1091,7 @@ class MyFrame(wx.Frame):</td>
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<pre style="margin: 0;"> <span id="LC1091" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">BoxPrebin</span><span class="p">[</span><span class="mi" style="color: #099;">6</span><span class="p">]</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Enable</span><span class="p">()</span></span>
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1092
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1092
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<pre style="margin: 0;"> <span id="LC1092" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># self.Update()</span></span>
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1093
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1093
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<pre style="margin: 0;"> <span id="LC1093" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC1094" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">OnMenuAbout</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">e<span class="idiff left right">vent</span></span><span class="p">):</span></span>
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1094
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<pre style="margin: 0;">+<span id="LC1094" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">OnMenuAbout</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;"><span class="idiff left">=</span></span><span class="bp" style="color: #999;"><span class="idiff right">None</span></span><span class="p">):</span></span>
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1095
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1095
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<pre style="margin: 0;"> <span id="LC1095" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Show About Information</span></span>
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1096
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1096
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<pre style="margin: 0;"> <span id="LC1096" class="line" lang="python"> <span class="n" style="color: #333;">description</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">description</span><span class="p">()</span></span>
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1097
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1097
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<pre style="margin: 0;"> <span id="LC1097" class="line" lang="python"> <span class="n" style="color: #333;">licence</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">licence</span><span class="p">()</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1125" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1125,16 +1125,16 @@ class MyFrame(wx.Frame):</td>
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1125
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<pre style="margin: 0;"> <span id="LC1125" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># defaults to linux style:</span></span>
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1126
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<pre style="margin: 0;"> <span id="LC1126" class="line" lang="python"> <span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">system</span><span class="p">(</span><span class="s" style="color: #d14;">"xdg-open "</span> <span class="o" style="font-weight: 600;">+</span> <span class="n" style="color: #333;">filename</span> <span class="o" style="font-weight: 600;">+</span> <span class="s" style="color: #d14;">" &"</span><span class="p">)</span></span>
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1127
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<pre style="margin: 0;"> <span id="LC1127" class="line" lang="python"></span>
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1128
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<pre style="margin: 0;">-<span id="LC1128" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">OnMenuExit</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">e</span><span class="p">):</span></span>
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1128
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<pre style="margin: 0;">+<span id="LC1128" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">OnMenuExit</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;"><span class="idiff left">=</span></span><span class="bp" style="color: #999;"><span class="idiff right">None</span></span><span class="p">):</span></span>
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1129
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1129
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<pre style="margin: 0;"> <span id="LC1129" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Exit the Program</span></span>
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1130
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1130
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<pre style="margin: 0;"> <span id="LC1130" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Close</span><span class="p">(</span><span class="bp" style="color: #999;">True</span><span class="p">)</span> <span class="c1" style="color: #998; font-style: italic;"># Close the frame.</span></span>
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1131
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<pre style="margin: 0;"> <span id="LC1131" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC1132" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">OnMenuSoftware</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">e<span class="idiff left right">vent</span></span><span class="p">):</span></span>
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1132
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<pre style="margin: 0;">+<span id="LC1132" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">OnMenuSoftware</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;"><span class="idiff left">=</span></span><span class="bp" style="color: #999;"><span class="idiff right">None</span></span><span class="p">):</span></span>
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1133
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1133
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<pre style="margin: 0;"> <span id="LC1133" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Show About Information</span></span>
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1134
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1134
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<pre style="margin: 0;"> <span id="LC1134" class="line" lang="python"> <span class="n" style="color: #333;">text</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">SoftwareUsed</span><span class="p">()</span></span>
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1135
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<pre style="margin: 0;"> <span id="LC1135" class="line" lang="python"> <span class="n" style="color: #333;">wx</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">MessageBox</span><span class="p">(</span><span class="n" style="color: #333;">text</span><span class="p">,</span> <span class="s" style="color: #d14;">'Software'</span><span class="p">,</span> <span class="n" style="color: #333;">wx</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">OK</span> <span class="o" style="font-weight: 600;">|</span> <span class="n" style="color: #333;">wx</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">ICON_INFORMATION</span><span class="p">)</span></span>
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1136
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1136
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<pre style="margin: 0;"> <span id="LC1136" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC1137" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">OnMenuSupport</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">e<span class="idiff left right">vent</span></span><span class="p">):</span></span>
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1137
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<pre style="margin: 0;">+<span id="LC1137" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">OnMenuSupport</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;"><span class="idiff left">=</span></span><span class="bp" style="color: #999;"><span class="idiff right">None</span></span><span class="p">):</span></span>
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1138
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1138
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<pre style="margin: 0;"> <span id="LC1138" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Show About Information</span></span>
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1139
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1139
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<pre style="margin: 0;"> <span id="LC1139" class="line" lang="python"> <span class="n" style="color: #333;">text</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">doc</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">support</span></span>
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1140
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1140
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<pre style="margin: 0;"> <span id="LC1140" class="line" lang="python"> <span class="n" style="color: #333;">wx</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">MessageBox</span><span class="p">(</span><span class="n" style="color: #333;">text</span><span class="p">,</span> <span class="s" style="color: #d14;">'Support'</span><span class="p">,</span> <span class="n" style="color: #333;">wx</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">OK</span> <span class="o" style="font-weight: 600;">|</span> <span class="n" style="color: #333;">wx</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">ICON_INFORMATION</span><span class="p">)</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1482" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="1482" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1482,7 +1482,7 @@ class MyFrame(wx.Frame):</td>
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1482
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<pre style="margin: 0;"> <span id="LC1482" class="line" lang="python"></span>
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<pre style="margin: 0;"> <span id="LC1483" class="line" lang="python"> <span class="n" style="color: #333;">wx</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">EndBusyCursor</span><span class="p">()</span></span>
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1484
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<pre style="margin: 0;"> <span id="LC1484" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC1485" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">OnOpenBinned</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">e</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC1485" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">OnOpenBinned</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;"><span class="idiff left">=</span></span><span class="bp" style="color: #999;"><span class="idiff right">None</span></span><span class="p">):</span></span>
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1486
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<pre style="margin: 0;"> <span id="LC1486" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Open a data file</span></span>
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1487
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1487
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<pre style="margin: 0;"> <span id="LC1487" class="line" lang="python"> <span class="s" style="color: #d14;">"""Import experimental data from a file."""</span></span>
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1488
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1488
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<pre style="margin: 0;"> <span id="LC1488" class="line" lang="python"> <span class="n" style="color: #333;">dlg</span> <span class="o" style="font-weight: 600;">=</span> <span class="n" style="color: #333;">wx</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">FileDialog</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="s" style="color: #d14;">"Choose a binned data file"</span><span class="p">,</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dirname</span><span class="p">,</span> <span class="s" style="color: #d14;">""</span><span class="p">,</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="1523" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1523,7 +1523,7 @@ class MyFrame(wx.Frame):</td>
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<pre style="margin: 0;"> <span id="LC1523" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">PlotImage</span><span class="p">()</span></span>
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1524
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<pre style="margin: 0;"> <span id="LC1524" class="line" lang="python"></span>
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1525
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1525
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<pre style="margin: 0;"> <span id="LC1525" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Current</span></span>
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1526
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<pre style="margin: 0;">-<span id="LC1526" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">OnOpenStream</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">e</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC1526" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">OnOpenStream</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;"><span class="idiff left">=</span></span><span class="bp" style="color: #999;"><span class="idiff right">None</span></span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC1527" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Open a data file</span></span>
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<pre style="margin: 0;"> <span id="LC1528" class="line" lang="python"> <span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;"> <span id="LC1529" class="line" lang="python"><span class="s" style="color: #d14;"> We open a .dat file as produced by the "Flex02-12D" correlator in photon</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1579,7 +1579,7 @@ class MyFrame(wx.Frame):</td>
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<pre style="margin: 0;"> <span id="LC1579" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">plotarea</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">UseRectangleSelector</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC1580" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">Update</span><span class="p">()</span></span>
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<pre style="margin: 0;"> <span id="LC1581" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC1582" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">OnSaveFits</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">e</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC1582" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">OnSaveFits</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;"><span class="idiff left">=</span></span><span class="bp" style="color: #999;"><span class="idiff right">None</span></span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC1583" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Save the Data</span></span>
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<pre style="margin: 0;"> <span id="LC1584" class="line" lang="python"> <span class="s" style="color: #d14;">""" Save binned data as a 2d array (image) """</span></span>
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<pre style="margin: 0;"> <span id="LC1585" class="line" lang="python"> <span class="k" style="font-weight: 600;">if</span> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">filename</span><span class="p">[</span><span class="o" style="font-weight: 600;">-</span><span class="mi" style="color: #099;">4</span><span class="p">:]</span> <span class="o" style="font-weight: 600;">==</span> <span class="s" style="color: #d14;">".dat"</span><span class="p">:</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -1639,7 +1639,7 @@ class MyFrame(wx.Frame):</td>
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<pre style="margin: 0;"> <span id="LC1639" class="line" lang="python"> <span class="n" style="color: #333;">hdulist</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">writeto</span><span class="p">(</span><span class="n" style="color: #333;">os</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">path</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">join</span><span class="p">(</span></span>
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<pre style="margin: 0;"> <span id="LC1640" class="line" lang="python"> <span class="bp" style="color: #999;">self</span><span class="o" style="font-weight: 600;">.</span><span class="n" style="color: #333;">dirname</span><span class="p">,</span> <span class="n" style="color: #333;">newfilename</span><span class="p">),</span> <span class="n" style="color: #333;">clobber</span><span class="o" style="font-weight: 600;">=</span><span class="bp" style="color: #999;">True</span><span class="p">)</span></span>
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<pre style="margin: 0;"> <span id="LC1641" class="line" lang="python"></span>
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<pre style="margin: 0;">-<span id="LC1642" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">OnSaveDat</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">e</span><span class="p">):</span></span>
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<pre style="margin: 0;">+<span id="LC1642" class="line" lang="python"> <span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">OnSaveDat</span><span class="p">(</span><span class="bp" style="color: #999;">self</span><span class="p">,</span> <span class="n" style="color: #333;">e</span><span class="o" style="font-weight: 600;"><span class="idiff left">=</span></span><span class="bp" style="color: #999;"><span class="idiff right">None</span></span><span class="p">):</span></span>
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<pre style="margin: 0;"> <span id="LC1643" class="line" lang="python"> <span class="c1" style="color: #998; font-style: italic;"># Save the Data</span></span>
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<pre style="margin: 0;"> <span id="LC1644" class="line" lang="python"> <span class="s" style="color: #d14;">"""</span></span>
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<pre style="margin: 0;"> <span id="LC1645" class="line" lang="python"><span class="s" style="color: #d14;"> Save experimental data as 32bit format.</span></span>
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<a href="https://salsa.debian.org/med-team/pyscanfcs/commit/d5446425c559acf442a4faf4f11f0fbfde2c0d38#8e2edce0d507e1297474f25c00cae94258db38d8"><strong>setup.py</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -70,7 +70,7 @@ setup(</td>
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<pre style="margin: 0;"> <span id="LC70" class="line" lang="python"> <span class="s" style="color: #d14;">"numpy>=1.5.1"</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC71" class="line" lang="python"> <span class="s" style="color: #d14;">"scikit-image>=0.13.1"</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC72" class="line" lang="python"> <span class="s" style="color: #d14;">"scipy>=0.8.0"</span><span class="p">,</span></span>
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="python"> <span class="s" style="color: #d14;">"wxpython>=4.0.<span class="idiff left right">1</span>"</span><span class="p">,</span></span>
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="python"> <span class="s" style="color: #d14;">"wxpython>=4.0.<span class="idiff left right">3</span>"</span><span class="p">,</span></span>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="python"> <span class="p">],</span></span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="python"> <span class="n" style="color: #333;">setup_requires</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">'cython'</span><span class="p">,</span> <span class="s" style="color: #d14;">'numpy'</span><span class="p">,</span> <span class="s" style="color: #d14;">'pytest-runner'</span><span class="p">],</span></span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="python"> <span class="n" style="color: #333;">tests_require</span><span class="o" style="font-weight: 600;">=</span><span class="p">[</span><span class="s" style="color: #d14;">"pytest"</span><span class="p">],</span></span>
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