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<h3>
Shayan Doust pushed to branch master
at <a href="https://salsa.debian.org/med-team/simka">Debian Med / simka</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/simka/commit/b5d5ae643f229fc2fd6eff0f5642343efd2d2f67">b5d5ae64</a></strong>
<div>
<span>by Shayan Doust</span>
<i>at 2019-09-11T22:22:45Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Fix linking error
Template functions must be entirely written in header but gatb-core has worked around this by cmake-generated templates. "Hard-code" some gatb-core variables.
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<h4>1 changed file:</h4>
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<li class="file-stats">
<a href="#234db63a8c60fb93d2ec114d06eb580fed2080cb">
debian/patches/use_debian_packaged_libraries.patch
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<h4>Changes:</h4>
<li id="234db63a8c60fb93d2ec114d06eb580fed2080cb">
<a href="https://salsa.debian.org/med-team/simka/commit/b5d5ae643f229fc2fd6eff0f5642343efd2d2f67#234db63a8c60fb93d2ec114d06eb580fed2080cb"><strong>debian/patches/use_debian_packaged_libraries.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -6,8 +6,8 @@ Last-Update: 2019-09-09</td>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff">Index: simka/CMakeLists.txt</span>
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<pre style="margin: 0;"> <span id="LC8" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- simka.orig/CMakeLists.txt 2019-09-<span class="idiff left right">09 05:24:49.083238549</span> +0100</span></span>
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<pre style="margin: 0;">-<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ simka/CMakeLists.txt 2019-09-<span class="idiff left right">09 05:25:25.95091876</span>6 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- simka.orig/CMakeLists.txt 2019-09-<span class="idiff left right">11 23:17:36.800233418</span> +0100</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ simka/CMakeLists.txt 2019-09-<span class="idiff left right">11 23:17:59.43619111</span>6 +0100</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"><span class="p">@@ -42,7 +42,10 @@</span></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"> SET (GATB_CORE_EXCLUDE_EXAMPLES 1)</span>
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="diff"> </span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -20,7 +20,19 @@ Index: simka/CMakeLists.txt</td>
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="diff"> ################################################################################</span>
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<pre style="margin: 0;"> <span id="LC22" class="line" lang="diff"> # TOOL</span>
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<pre style="margin: 0;">-<span id="LC23" class="line" lang="diff"><span class="p">@@ -78,18 +81,18 @@</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="p">@@ -62,8 +65,10 @@</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> # - from simka source</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> include_directories (include ${gatb-core-includes} ${PROJECT_SOURCE_DIR}/src/core ${PROJECT_SOURCE_DIR}/src/minikc ${PROJECT_SOURCE_DIR}/src)</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+list (APPEND KSIZE_DEFAULT_LIST 32 64 96 128 160 192 224 256)</span></span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+</span></span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"> # we generate one file per template specialization</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-FOREACH (KSIZE ${gatb-core-klist})</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+FOREACH (KSIZE ${KSIZE_DEFAULT_LIST})</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"> configure_file (</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"> ${PROJECT_SOURCE_DIR}/src/core/SimkaAlgorithmTemplate.cpp.in</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"> ${PROJECT_BINARY_DIR}/src/core/template/SimkaAlgorithmTemplate_${KSIZE}.cpp</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"><span class="p">@@ -78,18 +83,18 @@</span></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="diff"> set(PROJECT_BINARY_DIR ${CMAKE_CURRENT_BINARY_DIR}/bin)</span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="diff"> </span>
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="diff"> add_executable (simka src/SimkaPotara.cpp ${ProjectFiles})</span>
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