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<h3>
Andreas Tille pushed to branch upstream
at <a href="https://salsa.debian.org/med-team/metabit">Debian Med / metabit</a>
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<h4>
Commits:
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<ul>
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<strong><a href="https://salsa.debian.org/med-team/metabit/commit/776927135837119913e5cccf9256a1c2700b7dfb">77692713</a></strong>
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<span>by Andreas Tille</span>
<i>at 2019-09-11T08:43:49Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">New upstream version 0.0+git20170725.24cb3ee+dfsg</pre>
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<h4>2 changed files:</h4>
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<a href="#a5cc2925ca8258af241be7e5b0381edf30266302">
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+
.gitignore
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<a href="#7a2912fbe6ceea94da65eb5e202db62fb52ac768">
metaBIT.py
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<h4>Changes:</h4>
<li id="a5cc2925ca8258af241be7e5b0381edf30266302">
<a href="https://salsa.debian.org/med-team/metabit/commit/776927135837119913e5cccf9256a1c2700b7dfb#a5cc2925ca8258af241be7e5b0381edf30266302"><strong>.gitignore</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="plaintext">*.pyc</span></pre>
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<a href="https://salsa.debian.org/med-team/metabit/commit/776927135837119913e5cccf9256a1c2700b7dfb#7a2912fbe6ceea94da65eb5e202db62fb52ac768"><strong>metaBIT.py</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -36,7 +36,8 @@ _tools = {"filterMetaphlan": ["nodes", "tools", "filterMetaphlan.py"],</td>
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<td class="diff-line-num old_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
36
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<td class="diff-line-num new_line" data-linenumber="36" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
36
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="python"> <span class="s" style="color: #d14;">"doPcoa"</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">"nodes"</span><span class="p">,</span> <span class="s" style="color: #d14;">"tools"</span><span class="p">,</span> <span class="s" style="color: #d14;">"statax_Rmodule"</span><span class="p">,</span> <span class="s" style="color: #d14;">"doPcoa.R"</span><span class="p">],</span></span>
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<td class="diff-line-num old_line" data-linenumber="37" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="python"> <span class="s" style="color: #d14;">"doClust"</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">"nodes"</span><span class="p">,</span> <span class="s" style="color: #d14;">"tools"</span><span class="p">,</span> <span class="s" style="color: #d14;">"statax_Rmodule"</span><span class="p">,</span> <span class="s" style="color: #d14;">"doClust.R"</span><span class="p">],</span></span>
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<td class="diff-line-num old_line" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
38
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<td class="diff-line-num new_line" data-linenumber="38" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
38
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<pre style="margin: 0;"> <span id="LC38" class="line" lang="python"> <span class="s" style="color: #d14;">"doDiv"</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">"nodes"</span><span class="p">,</span> <span class="s" style="color: #d14;">"tools"</span><span class="p">,</span> <span class="s" style="color: #d14;">"statax_Rmodule"</span><span class="p">,</span> <span class="s" style="color: #d14;">"doDiv.R"</span><span class="p">],</span></span>
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<td class="diff-line-num old old_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
39
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<td class="diff-line-num new_line old" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC39" class="line" lang="python"> <span class="s" style="color: #d14;">"doHeatmap"</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">"nodes"</span><span class="p">,</span> <span class="s" style="color: #d14;">"tools"</span><span class="p">,</span> <span class="s" style="color: #d14;">"statax_Rmodule"</span><span class="p">,</span> <span class="s" style="color: #d14;">"doHeatmap.R"</span><span class="p">]}</span></span>
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<td class="diff-line-num new new_line" data-linenumber="39" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
39
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="python"> <span class="s" style="color: #d14;">"doHeatmap"</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">"nodes"</span><span class="p">,</span> <span class="s" style="color: #d14;">"tools"</span><span class="p">,</span> <span class="s" style="color: #d14;">"statax_Rmodule"</span><span class="p">,</span> <span class="s" style="color: #d14;">"doHeatmap.R"</span><span class="p">],</span></span>
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<td class="diff-line-num new new_line" data-linenumber="40" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
40
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="python"> <span class="s" style="color: #d14;">"doBarplot"</span><span class="p">:</span> <span class="p">[</span><span class="s" style="color: #d14;">"nodes"</span><span class="p">,</span> <span class="s" style="color: #d14;">"tools"</span><span class="p">,</span> <span class="s" style="color: #d14;">"statax_Rmodule"</span><span class="p">,</span> <span class="s" style="color: #d14;">"doBarplot.R"</span><span class="p">]}</span></span>
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<td class="diff-line-num new_line" data-linenumber="41" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC41" class="line" lang="python"></span>
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41
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<td class="diff-line-num new_line" data-linenumber="42" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC42" class="line" lang="python"></span>
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<td class="diff-line-num new_line" data-linenumber="43" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="python"><span class="k" style="font-weight: 600;">def</span> <span class="nf" style="color: #900; font-weight: 600;">run</span><span class="p">(</span><span class="n" style="color: #333;">config</span><span class="p">,</span> <span class="n" style="color: #333;">args</span><span class="p">):</span></span>
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