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<h3>
Shayan Doust pushed to branch master
at <a href="https://salsa.debian.org/med-team/simka">Debian Med / simka</a>
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<h4>
Commits:
</h4>
<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/simka/commit/ce6580fac1ebaa8e1acead27defda9efecd1e735">ce6580fa</a></strong>
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<span>by Shayan Doust</span>
<i>at 2019-09-12T23:59:04Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Add headers to the patches
</pre>
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<h4>2 changed files:</h4>
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<li class="file-stats">
<a href="#555c85016bd79aa8bbb523506af81b69d9c69534">
debian/patches/2to3.patch
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<li class="file-stats">
<a href="#9aeb3f33ba7407966ded6269d14de4bad9117663">
debian/patches/fix_test_path.patch
</a>
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<h4>Changes:</h4>
<li id="555c85016bd79aa8bbb523506af81b69d9c69534">
<a href="https://salsa.debian.org/med-team/simka/commit/ce6580fac1ebaa8e1acead27defda9efecd1e735#555c85016bd79aa8bbb523506af81b69d9c69534"><strong>debian/patches/2to3.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: port over python files using python2 to python3</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Author: Shayan Doust <hello@shayandoust.me></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Last-Update: 2019-09-13</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">---</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff">Index: simka/simkaMin/simkaMin.py</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- simka.orig/simkaMin/simkaMin.py 2019-09-1<span class="idiff left right">2 06:14:44.083241551</span> +0100</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ simka/simkaMin/simkaMin.py 2019-09-1<span class="idiff left right">2 06:14:44.0752415</span>78 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- simka.orig/simkaMin/simkaMin.py 2019-09-1<span class="idiff left right">3 00:56:25.479363956</span> +0100</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ simka/simkaMin/simkaMin.py 2019-09-1<span class="idiff left right">3 00:56:25.4753639</span>78 +0100</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="25" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="30" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -25,8 +30,8 @@ Index: simka/simkaMin/simkaMin.py</td>
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<pre style="margin: 0;"> <span id="LC30" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+print(("Result dir: " + args.out))</span></span>
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<pre style="margin: 0;"> <span id="LC31" class="line" lang="diff"><span class="gh" style="color: #999;">Index: simka/simkaMin/simkaMin_update.py</span></span>
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<pre style="margin: 0;"> <span id="LC32" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- simka.orig/simkaMin/simkaMin_update.py 2019-09-1<span class="idiff left right">2 06:14:44.083241551</span> +0100</span></span>
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<pre style="margin: 0;">-<span id="LC29" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ simka/simkaMin/simkaMin_update.py 2019-09-1<span class="idiff left right">2 06:14:44.079241565</span> +0100</span></span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- simka.orig/simkaMin/simkaMin_update.py 2019-09-1<span class="idiff left right">3 00:56:25.479363956</span> +0100</span></span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ simka/simkaMin/simkaMin_update.py 2019-09-1<span class="idiff left right">3 00:56:25.475363978</span> +0100</span></span>
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<pre style="margin: 0;"> <span id="LC35" class="line" lang="diff"><span class="p">@@ -1,4 +1,4 @@</span></span>
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<pre style="margin: 0;"> <span id="LC36" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-#!/usr/bin/env python</span></span>
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<pre style="margin: 0;"> <span id="LC37" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+#!/usr/bin/python3</span></span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -50,8 +55,8 @@ Index: simka/simkaMin/simkaMin_update.py</td>
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+print(("Result dir: " + existingDir))</span></span>
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="diff"><span class="gh" style="color: #999;">Index: simka/tests/simple_test.py</span></span>
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<pre style="margin: 0;"> <span id="LC57" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC53" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- simka.orig/tests/simple_test.py 2019-09-1<span class="idiff left right">2 06:14:44.039241699</span> +0100</span></span>
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<pre style="margin: 0;">-<span id="LC54" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ simka/tests/simple_test.py 2019-09-1<span class="idiff left right">2 06:15:23.251110325</span> +0100</span></span>
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<pre style="margin: 0;">+<span id="LC58" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- simka.orig/tests/simple_test.py 2019-09-1<span class="idiff left right">3 00:56:25.479363956</span> +0100</span></span>
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<pre style="margin: 0;">+<span id="LC59" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ simka/tests/simple_test.py 2019-09-1<span class="idiff left right">3 00:56:25.475363978</span> +0100</span></span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="diff"><span class="p">@@ -18,7 +18,7 @@</span></span>
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<pre style="margin: 0;"> <span id="LC61" class="line" lang="diff"> for filename_gz in result_filenames:</span>
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<pre style="margin: 0;"> <span id="LC62" class="line" lang="diff"> #filename_gz = result_dir + "/" + filename</span>
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<li id="9aeb3f33ba7407966ded6269d14de4bad9117663">
<a href="https://salsa.debian.org/med-team/simka/commit/ce6580fac1ebaa8e1acead27defda9efecd1e735#9aeb3f33ba7407966ded6269d14de4bad9117663"><strong>debian/patches/fix_test_path.patch</strong></a>
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<pre style="margin: 0;">+<span id="LC1" class="line" lang="diff"><span class="p">Description: modify the test python files to use binaries in /usr/bin</span></span>
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<pre style="margin: 0;">+<span id="LC2" class="line" lang="diff"><span class="p">Author: Shayan Doust <hello@shayandoust.me></span></span>
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<pre style="margin: 0;">+<span id="LC3" class="line" lang="diff"><span class="p">Last-Update: 2019-09-13</span></span>
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<pre style="margin: 0;">+<span id="LC4" class="line" lang="diff"><span class="p">---</span></span>
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<pre style="margin: 0;">+<span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff">Index: simka/tests/simkaMin/test_simkaMin.py</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC3" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- simka.orig/tests/simkaMin/test_simkaMin.py 2019-09-1<span class="idiff left right">1 23:39:55.656682381</span> +0100</span></span>
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<pre style="margin: 0;">-<span id="LC4" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ simka/tests/simkaMin/test_simkaMin.py 2019-09-1<span class="idiff left right">2 06:10:03.252182437</span> +0100</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- simka.orig/tests/simkaMin/test_simkaMin.py 2019-09-1<span class="idiff left right">3 00:54:35.331977272</span> +0100</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ simka/tests/simkaMin/test_simkaMin.py 2019-09-1<span class="idiff left right">3 00:54:35.327977295</span> +0100</span></span>
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<pre style="margin: 0;"> <span id="LC10" class="line" lang="diff"><span class="p">@@ -48,7 +48,7 @@</span></span>
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<pre style="margin: 0;"> <span id="LC11" class="line" lang="diff"> for nb_reads in NB_READS:</span>
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<pre style="margin: 0;"> <span id="LC12" class="line" lang="diff"> for nb_kmers in NB_KMERS:</span>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -69,8 +74,8 @@ Index: simka/tests/simkaMin/test_simkaMin.py</td>
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<pre style="margin: 0;"> <span id="LC74" class="line" lang="diff"> if ret != 0: exit(1)</span>
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="diff"><span class="gh" style="color: #999;">Index: simka/tests/simple_test.py</span></span>
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC72" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- simka.orig/tests/simple_test.py 2019-09-1<span class="idiff left right">1 23:39:55.66868234</span>2 +0100</span></span>
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<pre style="margin: 0;">-<span id="LC73" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ simka/tests/simple_test.py 2019-09-1<span class="idiff left right">2 06:14:31.939282238</span> +0100</span></span>
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<pre style="margin: 0;">+<span id="LC77" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- simka.orig/tests/simple_test.py 2019-09-1<span class="idiff left right">3 00:54:35.33197727</span>2 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC78" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ simka/tests/simple_test.py 2019-09-1<span class="idiff left right">3 00:54:35.327977295</span> +0100</span></span>
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<pre style="margin: 0;"> <span id="LC79" class="line" lang="diff"><span class="p">@@ -91,7 +91,7 @@</span></span>
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<pre style="margin: 0;"> <span id="LC80" class="line" lang="diff"> #test k=31 t=0</span>
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<pre style="margin: 0;"> <span id="LC81" class="line" lang="diff"> clear()</span>
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