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<h3>
Shayan Doust pushed to branch master
at <a href="https://salsa.debian.org/med-team/simka">Debian Med / simka</a>
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<h4>
Commits:
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<ul>
<li>
<strong><a href="https://salsa.debian.org/med-team/simka/commit/f51c315e8687e6e4badcbf60e0af34604273978d">f51c315e</a></strong>
<div>
<span>by Shayan Doust</span>
<i>at 2019-09-13T10:28:50Z</i>
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<pre class="commit-message" style="white-space: pre-wrap; margin: 0;">Autopkgtest for simka and simkamin
Simkamin hits a trouble of the test failing at the end to which awaiting for upstream to intervene
</pre>
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<h4>2 changed files:</h4>
<ul>
<li class="file-stats">
<a href="#9aeb3f33ba7407966ded6269d14de4bad9117663">
debian/patches/fix_test_path.patch
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<li class="file-stats">
<a href="#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
debian/tests/run-unit-test
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<h4>Changes:</h4>
<li id="9aeb3f33ba7407966ded6269d14de4bad9117663">
<a href="https://salsa.debian.org/med-team/simka/commit/f51c315e8687e6e4badcbf60e0af34604273978d#9aeb3f33ba7407966ded6269d14de4bad9117663"><strong>debian/patches/fix_test_path.patch</strong></a>
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<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -5,14 +5,47 @@ Last-Update: 2019-09-13</td>
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<pre style="margin: 0;"> <span id="LC5" class="line" lang="diff"></span>
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<pre style="margin: 0;"> <span id="LC6" class="line" lang="diff">Index: simka/tests/simkaMin/test_simkaMin.py</span>
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<pre style="margin: 0;"> <span id="LC7" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- simka.orig/tests/simkaMin/test_simkaMin.py 2019-09-13 08:06:40.164613706 +0100</span></span>
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<pre style="margin: 0;">-<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ simka/tests/simkaMin/test_simkaMin.py 2019-09-13 08:06:40.160613722 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC8" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- simka.orig/tests/simkaMin/test_simkaMin.py 2019-09-13 10:16:10.865442411 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC9" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ simka/tests/simkaMin/test_simkaMin.py 2019-09-13 10:16:10.861442427 +0100</span></span>
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<pre style="margin: 0;">+<span id="LC10" class="line" lang="diff"><span class="p">@@ -16,28 +16,28 @@</span></span>
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<pre style="margin: 0;">+<span id="LC11" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC12" class="line" lang="diff"> def create_command(scriptFilename, outputPrefix, k, filter, nb_reads, nb_kmers, nb_cores, input_filename):</span>
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<pre style="margin: 0;">+<span id="LC13" class="line" lang="diff"> outputDir = "k" + str(k) + "_" + filter.replace("-", "") + "_" + str(nb_reads) + "-" + str(nb_kmers) + "_n" + str(nb_cores)</span>
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<pre style="margin: 0;">+<span id="LC14" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- command = "python " + scriptFilename</span></span>
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<pre style="margin: 0;">+<span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ command =scriptFilename</span></span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="diff"> command += " -in " + input_filename</span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="diff"> command += " -out " + outputPrefix + "/" + outputDir</span>
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<pre style="margin: 0;">+<span id="LC18" class="line" lang="diff"> command += " -nb-cores " + str(nb_cores)</span>
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<pre style="margin: 0;">+<span id="LC19" class="line" lang="diff"> command += " -max-memory 100 "</span>
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<pre style="margin: 0;">+<span id="LC20" class="line" lang="diff"> command += " -kmer-size " + str(k)</span>
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<pre style="margin: 0;">+<span id="LC21" class="line" lang="diff"> command += " -nb-kmers " + str(nb_kmers)</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- command += " -bin ../../build/bin/simkaMinCore "</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ command += " -bin simkaMinCore "</span></span>
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<pre style="margin: 0;">+<span id="LC24" class="line" lang="diff"> command += " -max-reads " + str(nb_reads)</span>
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<pre style="margin: 0;">+<span id="LC25" class="line" lang="diff"> command += " " + filter + " "</span>
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<pre style="margin: 0;">+<span id="LC26" class="line" lang="diff"> return command, outputDir</span>
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<pre style="margin: 0;">+<span id="LC27" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC28" class="line" lang="diff"> def create_command_update(scriptFilename, outputPrefix, k, filter, nb_reads, nb_kmers, nb_cores, input_filename):</span>
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<pre style="margin: 0;">+<span id="LC29" class="line" lang="diff"> outputDir = "k" + str(k) + "_" + filter.replace("-", "") + "_" + str(nb_reads) + "-" + str(nb_kmers) + "_n" + str(nb_cores)</span>
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<pre style="margin: 0;">+<span id="LC30" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- command = "python " + scriptFilename</span></span>
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<pre style="margin: 0;">+<span id="LC31" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ command = scriptFilename</span></span>
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<pre style="margin: 0;">+<span id="LC32" class="line" lang="diff"> command += " -in " + input_filename</span>
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<pre style="margin: 0;">+<span id="LC33" class="line" lang="diff"> command += " -in-to-update " + outputPrefix + "/" + outputDir</span>
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<pre style="margin: 0;">+<span id="LC34" class="line" lang="diff"> command += " -nb-cores " + str(nb_cores)</span>
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<pre style="margin: 0;">+<span id="LC35" class="line" lang="diff"> command += " -max-memory 100 "</span>
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<pre style="margin: 0;">+<span id="LC36" class="line" lang="diff"> #command += " -kmer-size " + str(k)</span>
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<pre style="margin: 0;">+<span id="LC37" class="line" lang="diff"> #command += " -nb-kmers " + str(nb_kmers)</span>
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<pre style="margin: 0;">+<span id="LC38" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- command += " -bin ../../build/bin/simkaMinCore "</span></span>
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<pre style="margin: 0;">+<span id="LC39" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ command += " -bin simkaMinCore "</span></span>
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<pre style="margin: 0;">+<span id="LC40" class="line" lang="diff"> command += " -max-reads " + str(nb_reads)</span>
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<pre style="margin: 0;">+<span id="LC41" class="line" lang="diff"> command += " " + filter + " "</span>
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<pre style="margin: 0;">+<span id="LC42" class="line" lang="diff"> return command, outputDir</span>
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<pre style="margin: 0;"> <span id="LC43" class="line" lang="diff"><span class="p">@@ -48,7 +48,7 @@</span></span>
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<pre style="margin: 0;"> <span id="LC44" class="line" lang="diff"> for nb_reads in NB_READS:</span>
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<pre style="margin: 0;"> <span id="LC45" class="line" lang="diff"> for nb_kmers in NB_KMERS:</span>
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<pre style="margin: 0;"> <span id="LC46" class="line" lang="diff"> for nb_cores in NB_CORES:</span>
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<pre style="margin: 0;"> <span id="LC47" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- command, outputDir = create_command("../../simkaMin/simkaMin.py", "truth_simkaMin", k, filter, nb_reads, nb_kmers, nb_cores, " ../../example/simka_input.txt ")</span></span>
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<pre style="margin: 0;">-<span id="LC15" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ command, outputDir = create_command("simkaMin", "truth_simkaMin", k, filter, nb_reads, nb_kmers, nb_cores, " ../<span class="idiff left right">../example/</span>simka_input.txt ")</span></span>
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<pre style="margin: 0;">+<span id="LC48" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ command, outputDir = create_command("simkaMin", "truth_simkaMin", k, filter, nb_reads, nb_kmers, nb_cores, " ../simka_input.txt ")</span></span>
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16
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49
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<pre style="margin: 0;"> <span id="LC49" class="line" lang="diff"> print (command)</span>
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17
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50
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<pre style="margin: 0;"> <span id="LC50" class="line" lang="diff"> ret = os.system(command)</span>
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18
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51
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<pre style="margin: 0;"> <span id="LC51" class="line" lang="diff"> if ret != 0: exit(1)</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="54" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -21,11 +54,24 @@ Index: simka/tests/simkaMin/test_simkaMin.py</td>
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21
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<pre style="margin: 0;"> <span id="LC54" class="line" lang="diff"> for nb_kmers in NB_KMERS:</span>
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22
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<pre style="margin: 0;"> <span id="LC55" class="line" lang="diff"> for nb_cores in NB_CORES:</span>
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23
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<pre style="margin: 0;"> <span id="LC56" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- command, outputDir = create_command("../../simkaMin/simkaMin.py", dir, k, filter, nb_reads, nb_kmers, nb_cores, " ../../example/simka_input.txt ")</span></span>
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24
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<pre style="margin: 0;">-<span id="LC24" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ command, outputDir = create_command("simkaMin", dir, k, filter, nb_reads, nb_kmers, nb_cores, " ../<span class="idiff left right">../example/</span>simka_input.txt ")</span></span>
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57
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<pre style="margin: 0;">+<span id="LC57" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ command, outputDir = create_command("simkaMin", dir, k, filter, nb_reads, nb_kmers, nb_cores, " ../simka_input.txt ")</span></span>
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25
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<pre style="margin: 0;"> <span id="LC58" class="line" lang="diff"> print (command)</span>
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26
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<pre style="margin: 0;"> <span id="LC59" class="line" lang="diff"> ret = os.system(command + suffix)</span>
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<pre style="margin: 0;"> <span id="LC60" class="line" lang="diff"> if ret != 0: exit(1)</span>
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<pre style="margin: 0;">-<span id="LC28" class="line" lang="diff"><span class="p">@@ -179,14 +179,14 @@</span></span>
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<pre style="margin: 0;">+<span id="LC61" class="line" lang="diff"><span class="p">@@ -168,25 +168,25 @@</span></span>
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<pre style="margin: 0;">+<span id="LC62" class="line" lang="diff"> os.mkdir(out_dir)</span>
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<pre style="margin: 0;">+<span id="LC63" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC64" class="line" lang="diff"> merged_sketch_filename = os.path.join(out_dir, "merged_sketch.bin")</span>
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<pre style="margin: 0;">+<span id="LC65" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- filename = "../../example/simka_input.txt"</span></span>
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<pre style="margin: 0;">+<span id="LC66" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ filename = "../simka_input.txt"</span></span>
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<pre style="margin: 0;">+<span id="LC67" class="line" lang="diff"> for line in open(filename):</span>
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<pre style="margin: 0;">+<span id="LC68" class="line" lang="diff"> line = line.strip()</span>
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<pre style="margin: 0;">+<span id="LC69" class="line" lang="diff"> if len(line) == 0: continue</span>
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<pre style="margin: 0;">+<span id="LC70" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC71" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- filename_temp = os.path.join("../../example/test_simkaMin_input_temp.txt")</span></span>
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<pre style="margin: 0;">+<span id="LC72" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ filename_temp = os.path.join("../test_simkaMin_input_temp.txt")</span></span>
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73
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<pre style="margin: 0;">+<span id="LC73" class="line" lang="diff"> f = open(filename_temp, "w")</span>
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74
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<pre style="margin: 0;">+<span id="LC74" class="line" lang="diff"> f.write(line)</span>
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29
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75
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<pre style="margin: 0;"> <span id="LC75" class="line" lang="diff"> f.close()</span>
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30
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76
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<pre style="margin: 0;"> <span id="LC76" class="line" lang="diff"> </span>
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31
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77
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<pre style="margin: 0;"> <span id="LC77" class="line" lang="diff"> sketch_filename = os.path.join(out_dir, "sketch.bin")</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="57" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -57,7 +103,20 @@ Index: simka/tests/simkaMin/test_simkaMin.py</td>
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57
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103
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<pre style="margin: 0;"> <span id="LC103" class="line" lang="diff"> print(command)</span>
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58
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104
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<pre style="margin: 0;"> <span id="LC104" class="line" lang="diff"> ret = os.system(command + suffix)</span>
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59
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105
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<pre style="margin: 0;"> <span id="LC105" class="line" lang="diff"> if ret != 0: exit(1)</span>
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60
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<pre style="margin: 0;">-<span id="LC60" class="line" lang="diff"><span class="p">@@ -237,12 +237,12 @@</span></span>
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<pre style="margin: 0;">+<span id="LC106" class="line" lang="diff"><span class="p">@@ -226,23 +226,23 @@</span></span>
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<pre style="margin: 0;">+<span id="LC107" class="line" lang="diff"> os.mkdir(out_dir)</span>
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<pre style="margin: 0;">+<span id="LC108" class="line" lang="diff"> </span>
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<pre style="margin: 0;">+<span id="LC109" class="line" lang="diff"> init = False</span>
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<pre style="margin: 0;">+<span id="LC110" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- filename = "../../example/simka_input.txt"</span></span>
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<pre style="margin: 0;">+<span id="LC111" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ filename = "../simka_input.txt"</span></span>
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<pre style="margin: 0;">+<span id="LC112" class="line" lang="diff"> for line in open(filename):</span>
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<pre style="margin: 0;">+<span id="LC113" class="line" lang="diff"> line = line.strip()</span>
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<pre style="margin: 0;">+<span id="LC114" class="line" lang="diff"> if len(line) == 0: continue</span>
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<pre style="margin: 0;">+<span id="LC115" class="line" lang="diff"> </span>
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116
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<pre style="margin: 0;">+<span id="LC116" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">- filename_temp = os.path.join("../../example/test_simkaMin_input_temp.txt")</span></span>
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117
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<pre style="margin: 0;">+<span id="LC117" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+ filename_temp = os.path.join("../test_simkaMin_input_temp.txt")</span></span>
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<pre style="margin: 0;">+<span id="LC118" class="line" lang="diff"> f = open(filename_temp, "w")</span>
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<pre style="margin: 0;">+<span id="LC119" class="line" lang="diff"> f.write(line)</span>
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<pre style="margin: 0;"> <span id="LC120" class="line" lang="diff"> f.close()</span>
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<pre style="margin: 0;"> <span id="LC121" class="line" lang="diff"> </span>
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63
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122
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<pre style="margin: 0;"> <span id="LC122" class="line" lang="diff"> if init:</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="133" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -74,14 +133,14 @@ Index: simka/tests/simkaMin/test_simkaMin.py</td>
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74
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133
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<pre style="margin: 0;"> <span id="LC133" class="line" lang="diff"> if ret != 0: exit(1)</span>
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75
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134
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<pre style="margin: 0;"> <span id="LC134" class="line" lang="diff"><span class="gh" style="color: #999;">Index: simka/tests/simple_test.py</span></span>
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135
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<pre style="margin: 0;"> <span id="LC135" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC77" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- simka.orig/tests/simple_test.py 2019-09-13 <span class="idiff left right">08:06:40.164613706</span> +0100</span></span>
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<pre style="margin: 0;">-<span id="LC78" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ simka/tests/simple_test.py 2019-09-13 <span class="idiff left right">08:06:40.160613722</span> +0100</span></span>
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136
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<pre style="margin: 0;">+<span id="LC136" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- simka.orig/tests/simple_test.py 2019-09-13 <span class="idiff left right">10:16:10.865442411</span> +0100</span></span>
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137
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<pre style="margin: 0;">+<span id="LC137" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ simka/tests/simple_test.py 2019-09-13 <span class="idiff left right">10:16:58.213252568</span> +0100</span></span>
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79
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138
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<pre style="margin: 0;"> <span id="LC138" class="line" lang="diff"><span class="p">@@ -91,7 +91,7 @@</span></span>
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80
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139
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<pre style="margin: 0;"> <span id="LC139" class="line" lang="diff"> #test k=31 t=0</span>
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81
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140
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<pre style="margin: 0;"> <span id="LC140" class="line" lang="diff"> clear()</span>
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82
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141
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<pre style="margin: 0;"> <span id="LC141" class="line" lang="diff"> print("TESTING k=31 t=0")</span>
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83
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142
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<pre style="margin: 0;"> <span id="LC142" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-command = "../build/bin/simka -in ../example/simka_input.txt -out ./__results__/results_k31_t0 -out-tmp ./temp_output -simple-dist -complex-dist -kmer-size 31 -abundance-min 0 -verbose 0"</span></span>
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84
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<pre style="margin: 0;">-<span id="LC84" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+command = "<span class="idiff left right">/usr/bin/</span>simka -in simka_input.txt -out ./__results__/results_k31_t0 -out-tmp ./temp_output -simple-dist -complex-dist -kmer-size 31 -abundance-min 0 -verbose 0"</span></span>
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143
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<pre style="margin: 0;">+<span id="LC143" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+command = "simka -in simka_input.txt -out ./__results__/results_k31_t0 -out-tmp ./temp_output -simple-dist -complex-dist -kmer-size 31 -abundance-min 0 -verbose 0"</span></span>
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85
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144
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<pre style="margin: 0;"> <span id="LC144" class="line" lang="diff"> print(command)</span>
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86
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145
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<pre style="margin: 0;"> <span id="LC145" class="line" lang="diff"> os.system(command + suffix)</span>
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87
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146
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<pre style="margin: 0;"> <span id="LC146" class="line" lang="diff"> test_dists("results_k31_t0")</span>
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<td class="diff-line-num unfold js-unfold new_line" data-linenumber="149" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -90,7 +149,7 @@ Index: simka/tests/simple_test.py</td>
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90
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149
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<pre style="margin: 0;"> <span id="LC149" class="line" lang="diff"> clear()</span>
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91
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150
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<pre style="margin: 0;"> <span id="LC150" class="line" lang="diff"> print("TESTING k=21 t=0")</span>
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92
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151
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<pre style="margin: 0;"> <span id="LC151" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-command = "../build/bin/simka -in ../example/simka_input.txt -out ./__results__/results_k21_t0 -out-tmp ./temp_output -simple-dist -complex-dist -kmer-size 21 -abundance-min 0 -verbose 0"</span></span>
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93
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<pre style="margin: 0;">-<span id="LC93" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+command = "<span class="idiff left right">/usr/bin/</span>simka -in simka_input.txt -out ./__results__/results_k21_t0 -out-tmp ./temp_output -simple-dist -complex-dist -kmer-size 21 -abundance-min 0 -verbose 0"</span></span>
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152
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<pre style="margin: 0;">+<span id="LC152" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+command = "simka -in simka_input.txt -out ./__results__/results_k21_t0 -out-tmp ./temp_output -simple-dist -complex-dist -kmer-size 21 -abundance-min 0 -verbose 0"</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="94" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
94
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<td class="diff-line-num new_line" data-linenumber="153" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
153
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<pre style="margin: 0;"> <span id="LC153" class="line" lang="diff"> print(command)</span>
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<td class="diff-line-num old_line" data-linenumber="95" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
95
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<td class="diff-line-num new_line" data-linenumber="154" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
154
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<pre style="margin: 0;"> <span id="LC154" class="line" lang="diff"> os.system(command + suffix)</span>
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<td class="diff-line-num old_line" data-linenumber="96" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
96
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<td class="diff-line-num new_line" data-linenumber="155" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
155
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<pre style="margin: 0;"> <span id="LC155" class="line" lang="diff"> test_dists("results_k21_t0")</span>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="99" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -99,7 +158,7 @@ Index: simka/tests/simple_test.py</td>
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99
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<td class="diff-line-num new_line" data-linenumber="158" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
158
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<pre style="margin: 0;"> <span id="LC158" class="line" lang="diff"> clear()</span>
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<td class="diff-line-num old_line" data-linenumber="100" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
100
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<td class="diff-line-num new_line" data-linenumber="159" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
159
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<pre style="margin: 0;"> <span id="LC159" class="line" lang="diff"> print("TESTING k=31 t=2")</span>
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<td class="diff-line-num old_line" data-linenumber="101" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
101
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<td class="diff-line-num new_line" data-linenumber="160" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
160
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<pre style="margin: 0;"> <span id="LC160" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-command = "../build/bin/simka -in ../example/simka_input.txt -out ./__results__/results_k31_t2 -out-tmp ./temp_output -simple-dist -complex-dist -kmer-size 31 -abundance-min 2 -verbose 0"</span></span>
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<td class="diff-line-num old old_line" data-linenumber="102" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
102
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<td class="diff-line-num new_line old" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC102" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+command = "<span class="idiff left right">/usr/bin/</span>simka -in simka_input.txt -out ./__results__/results_k31_t2 -out-tmp ./temp_output -simple-dist -complex-dist -kmer-size 31 -abundance-min 2 -verbose 0"</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="161" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
161
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<pre style="margin: 0;">+<span id="LC161" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+command = "simka -in simka_input.txt -out ./__results__/results_k31_t2 -out-tmp ./temp_output -simple-dist -complex-dist -kmer-size 31 -abundance-min 2 -verbose 0"</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="103" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
103
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<td class="diff-line-num new_line" data-linenumber="162" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
162
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<pre style="margin: 0;"> <span id="LC162" class="line" lang="diff"> print(command)</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="104" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
104
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<td class="diff-line-num new_line" data-linenumber="163" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
163
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<pre style="margin: 0;"> <span id="LC163" class="line" lang="diff"> os.system(command + suffix)</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="105" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
105
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<td class="diff-line-num new_line" data-linenumber="164" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
164
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<pre style="margin: 0;"> <span id="LC164" class="line" lang="diff"> test_dists("results_k31_t2")</span>
</pre>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -108,7 +167,7 @@ Index: simka/tests/simple_test.py</td>
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<td class="diff-line-num old_line" data-linenumber="108" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
108
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<td class="diff-line-num new_line" data-linenumber="167" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
167
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<pre style="margin: 0;"> <span id="LC167" class="line" lang="diff"> clear()</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="109" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
109
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<td class="diff-line-num new_line" data-linenumber="168" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
168
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<pre style="margin: 0;"> <span id="LC168" class="line" lang="diff"> print("TESTING k=21 t=2")</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="110" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
110
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<td class="diff-line-num new_line" data-linenumber="169" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
169
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC169" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-command = "../build/bin/simka -in ../example/simka_input.txt -out ./__results__/results_k21_t2 -out-tmp ./temp_output -simple-dist -complex-dist -kmer-size 21 -abundance-min 2 -verbose 0"</span></span>
</pre>
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<td class="diff-line-num old old_line" data-linenumber="111" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
111
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<td class="diff-line-num new_line old" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #fac5cd; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#f9d7dc">
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<pre style="margin: 0;">-<span id="LC111" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+command = "<span class="idiff left right">/usr/bin/</span>simka -in simka_input.txt -out ./__results__/results_k21_t2 -out-tmp ./temp_output -simple-dist -complex-dist -kmer-size 21 -abundance-min 2 -verbose 0"</span></span>
</pre>
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<td class="diff-line-num new old_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
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<td class="diff-line-num new new_line" data-linenumber="170" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
170
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<pre style="margin: 0;">+<span id="LC170" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+command = "simka -in simka_input.txt -out ./__results__/results_k21_t2 -out-tmp ./temp_output -simple-dist -complex-dist -kmer-size 21 -abundance-min 2 -verbose 0"</span></span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="112" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
112
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<td class="diff-line-num new_line" data-linenumber="171" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
171
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<pre style="margin: 0;"> <span id="LC171" class="line" lang="diff"> print(command)</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="113" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
113
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<td class="diff-line-num new_line" data-linenumber="172" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
172
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<pre style="margin: 0;"> <span id="LC172" class="line" lang="diff"> os.system(command + suffix)</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="114" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
114
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<td class="diff-line-num new_line" data-linenumber="173" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
173
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<td class="line_content" style="padding-left: 0.5em; padding-right: 0.5em;">
<pre style="margin: 0;"> <span id="LC173" class="line" lang="diff"> test_dists("results_k21_t2")</span>
</pre>
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<tr class="line_holder match" id="" style="line-height: 1.6;">
<td class="diff-line-num unfold js-unfold old_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -117,17 +176,17 @@ Index: simka/tests/simple_test.py</td>
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<td class="diff-line-num old_line" data-linenumber="117" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
117
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<td class="diff-line-num new_line" data-linenumber="176" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
176
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<pre style="margin: 0;"> <span id="LC176" class="line" lang="diff"> clear()</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="118" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
118
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<td class="diff-line-num new_line" data-linenumber="177" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
177
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<pre style="margin: 0;"> <span id="LC177" class="line" lang="diff"> print("TESTING parallelization")</span>
</pre>
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<td class="diff-line-num old_line" data-linenumber="119" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
119
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<td class="diff-line-num new_line" data-linenumber="178" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
178
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<pre style="margin: 0;"> <span id="LC178" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-command = "../build/bin/simka -in ../example/simka_input.txt -out ./__results__/results_resources1 -out-tmp ./temp_output -simple-dist -complex-dist -kmer-size 21 -abundance-min 0 -nb-cores 20 -max-memory 4000 -verbose 0"</span></span>
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<pre style="margin: 0;">-<span id="LC120" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+command = "<span class="idiff left right">/usr/bin/</span>simka -in simka_input.txt -out ./__results__/results_resources1 -out-tmp ./temp_output -simple-dist -complex-dist -kmer-size 21 -abundance-min 0 -nb-cores 20 -max-memory 4000 -verbose 0"</span></span>
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<td class="diff-line-num new new_line" data-linenumber="179" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #c7f0d2; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#ddfbe6">
179
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<pre style="margin: 0;">+<span id="LC179" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+command = "simka -in simka_input.txt -out ./__results__/results_resources1 -out-tmp ./temp_output -simple-dist -complex-dist -kmer-size 21 -abundance-min 0 -nb-cores 20 -max-memory 4000 -verbose 0"</span></span>
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121
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180
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<pre style="margin: 0;"> <span id="LC180" class="line" lang="diff"> os.system(command + suffix)</span>
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<td class="diff-line-num old_line" data-linenumber="122" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">
122
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181
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<pre style="margin: 0;"> <span id="LC181" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">-command = "../build/bin/simka -in ../example/simka_input.txt -out ./__results__/results_resources2 -out-tmp ./temp_output -simple-dist -complex-dist -kmer-size 21 -abundance-min 0 -nb-cores 2 -max-memory 2000 -verbose 0"</span></span>
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123
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<pre style="margin: 0;">-<span id="LC123" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+command = "<span class="idiff left right">/usr/bin/</span>simka -in simka_input.txt -out ./__results__/results_resources2 -out-tmp ./temp_output -simple-dist -complex-dist -kmer-size 21 -abundance-min 0 -nb-cores 2 -max-memory 2000 -verbose 0"</span></span>
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182
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<pre style="margin: 0;">+<span id="LC182" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+command = "simka -in simka_input.txt -out ./__results__/results_resources2 -out-tmp ./temp_output -simple-dist -complex-dist -kmer-size 21 -abundance-min 0 -nb-cores 2 -max-memory 2000 -verbose 0"</span></span>
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124
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183
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<pre style="margin: 0;"> <span id="LC183" class="line" lang="diff"> os.system(command + suffix)</span>
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125
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184
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<pre style="margin: 0;"> <span id="LC184" class="line" lang="diff"> test_parallelization()</span>
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126
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185
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<pre style="margin: 0;"> <span id="LC185" class="line" lang="diff"> </span>
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127
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186
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<pre style="margin: 0;"> <span id="LC186" class="line" lang="diff"><span class="gh" style="color: #999;">Index: simka/example/simple_test.sh</span></span>
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187
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<pre style="margin: 0;"> <span id="LC187" class="line" lang="diff"><span class="gh" style="color: #999;">===================================================================</span></span>
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<pre style="margin: 0;">-<span id="LC129" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- simka.orig/example/simple_test.sh 2019-09-13 <span class="idiff left right">08:06:40.164613706</span> +0100</span></span>
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<pre style="margin: 0;">-<span id="LC130" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ simka/example/simple_test.sh 2019-09-13 <span class="idiff left right">08:07:06.216509113</span> +0100</span></span>
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188
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<pre style="margin: 0;">+<span id="LC188" class="line" lang="diff"><span class="gd" style="color: #000; background-color: #fdd;">--- simka.orig/example/simple_test.sh 2019-09-13 <span class="idiff left right">10:16:10.865442411</span> +0100</span></span>
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<pre style="margin: 0;">+<span id="LC189" class="line" lang="diff"><span class="gi" style="color: #000; background-color: #dfd;">+++ simka/example/simple_test.sh 2019-09-13 <span class="idiff left right">10:16:10.861442427</span> +0100</span></span>
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131
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190
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<pre style="margin: 0;"> <span id="LC190" class="line" lang="diff"><span class="p">@@ -3,19 +3,19 @@</span></span>
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<pre style="margin: 0;"> <span id="LC191" class="line" lang="diff"> </span>
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133
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<pre style="margin: 0;"> <span id="LC192" class="line" lang="diff"> # look for simka binary. In devel mode, it's in ../build/bin directory.</span>
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<br>
</li>
<li id="8c77cc51b09ef1f7b294222180bcdb53ebb70e2f">
<a href="https://salsa.debian.org/med-team/simka/commit/f51c315e8687e6e4badcbf60e0af34604273978d#8c77cc51b09ef1f7b294222180bcdb53ebb70e2f"><strong>debian/tests/run-unit-test</strong></a>
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<td class="diff-line-num unfold js-unfold old_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="diff-line-num unfold js-unfold new_line" data-linenumber="13" style="width: 35px; color: rgba(0,0,0,0.3); border-right-width: 1px; border-right-color: #f0f0f0; border-right-style: solid; padding: 0 5px;" align="right" bgcolor="#fafafa">...</td>
<td class="line_content match " style="padding-left: 0.5em; padding-right: 0.5em; color: rgba(0,0,0,0.3);" bgcolor="#fafafa">@@ -13,9 +13,11 @@ cp -a /usr/share/doc/${pkg}/example/* "${AUTOPKGTEST_TMP}"</td>
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13
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13
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<pre style="margin: 0;"> <span id="LC13" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cp</span> <span class="nt" style="color: #000080;">-a</span> /usr/share/doc/<span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">pkg</span><span class="k" style="font-weight: 600;">}</span>min/example/<span class="k" style="font-weight: 600;">*</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span></span>
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14
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<pre style="margin: 0;"> <span id="LC14" class="line" lang="shell"></span>
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15
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<pre style="margin: 0;"> <span id="LC15" class="line" lang="shell"><span class="nb" style="color: #0086b3;">cd</span> <span class="s2" style="color: #d14;">"</span><span class="k" style="font-weight: 600;">${</span><span class="nv" style="color: #008080;">AUTOPKGTEST_TMP</span><span class="k" style="font-weight: 600;">}</span><span class="s2" style="color: #d14;">"</span></span>
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<pre style="margin: 0;">-<span id="LC16" class="line" lang="shell"><span class="nb" style="color: #0086b3;">gunzip</span> <span class="k" style="font-weight: 600;">*</span>.gz</span>
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<pre style="margin: 0;">+<span id="LC16" class="line" lang="shell">find <span class="nb" style="color: #0086b3;">.</span> <span class="nt" style="color: #000080;">-name</span> <span class="s2" style="color: #d14;">"*.gz"</span> <span class="nt" style="color: #000080;">-exec</span> <span class="nb" style="color: #0086b3;">gunzip</span> <span class="se" style="color: #d14;">\{\}</span> <span class="se" style="color: #d14;">\;</span></span>
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<pre style="margin: 0;">+<span id="LC17" class="line" lang="shell"><span class="nb" style="color: #0086b3;">ls</span> <span class="o" style="font-weight: 600;">&&</span> <span class="nb" style="color: #0086b3;">ls </span>simkaMin</span>
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17
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<pre style="margin: 0;"> <span id="LC18" class="line" lang="shell"></span>
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18
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<pre style="margin: 0;"> <span id="LC19" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"Testing simka"</span></span>
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19
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<pre style="margin: 0;"> <span id="LC20" class="line" lang="shell">bash simple_test.sh</span>
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20
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<pre style="margin: 0;">-<span id="LC20" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"Testing simkaMin"</span></span>
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21
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<pre style="margin: 0;"> <span id="LC21" class="line" lang="shell">python3 simple_test.py</span>
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<pre style="margin: 0;">+<span id="LC22" class="line" lang="shell"><span class="nb" style="color: #0086b3;">echo</span> <span class="s2" style="color: #d14;">"Testing simkaMin"</span></span>
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<pre style="margin: 0;">+<span id="LC23" class="line" lang="shell">python3 simkaMin/test_simkaMin.py</span></pre>
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